View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_low_11 (Length: 472)
Name: NF6776_low_11
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 6 - 451
Target Start/End: Complemental strand, 26422464 - 26422022
Alignment:
| Q |
6 |
gatggacatcatcaaaattcccgcaaaacctgaagtaaagctcctcactcagaaaaaatttgtgcccatcatcaaaattccagcaactgactcctcccac |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26422464 |
gatggccatcatcaaaattcccgcaaaacctgaagtaaagctcctcactcagaagaaatttgtgcccatcatcaaaattcccgcaactgactcctcccac |
26422365 |
T |
|
| Q |
106 |
ttgacaccactattctcatatcgcccttttcaattttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422364 |
ttgacaccactattctcatatcgcccttttcaattttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagt |
26422265 |
T |
|
| Q |
206 |
tcttttttatccctaaaatattaatctttccctgaatgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagc |
305 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422264 |
tcttttttatccctaaaatattaatctgtccctgaatgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagc |
26422165 |
T |
|
| Q |
306 |
atcttctcatatagtctcttctatgaattgtctttcttaatgaataactaacttaggtgttttctccccctgttccacgatatttccagtaatcaattct |
405 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26422164 |
atcttctcatatagtctcttctatgaattgtctttctcaatgaataactaactta---gttttctccccctgttccacaatatttccagtaatcaattct |
26422068 |
T |
|
| Q |
406 |
tttaatgtcattccacacctgtgctctccacatccatcccctgagc |
451 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
26422067 |
tttaatgttattccacacctgtgctctccacatccatcccctgagc |
26422022 |
T |
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