View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_low_16 (Length: 408)

Name: NF6776_low_16
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6776_low_16
NF6776_low_16
[»] chr3 (7 HSPs)
chr3 (10-408)||(28926858-28927256)
chr3 (75-235)||(28903934-28904094)
chr3 (13-211)||(28893991-28894197)
chr3 (83-217)||(28938554-28938687)
chr3 (75-215)||(28917730-28917870)
chr3 (348-408)||(28893832-28893892)
chr3 (348-391)||(28917602-28917645)


Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 28927256 - 28926858
Alignment:
Q  10 ttgatcactatcgttagcatgttttactgttggatacttggatcattttgtaaatgacatttttgtgtgactttcttttttatggttgattaaagggatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28927256 ttgatcactatcgttagcatgttttactgttggatacttggatcattttgtaaatgacatttttgtgtgactttcttttttatggttgattaaagggatt 28927157  T
Q  110 gccttaagacctatcatgctaaatgcctgggtcattatgcttcatttatggagattgacaataattggtgttgtggtaagctgcttcatcttttattttt 209  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28927156 gccttaaaacctatcatgctaaatgcctgggtcatgatgcttcctttatggagaatgacaataattggtgttgtggtaagctgcttcatcttttattttt 28927057  T
Q  210 gcctttatcgtaggaaattcaattacttttgttagtgtgatacacatttatgcatttgatcccaccatgacaattagccatcttgtatctttcttgaaaa 309  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28927056 gcctttaccgtaggaaattcaattacttttgttagtgtgatacacatttatgcatttgatcccaccatgacaattagccatcttgtatctttcttgaaaa 28926957  T
Q  310 tatgctcttgcccaagtttaaatttcaaacactctatatgcatatcctgaatcctgattatataaaaaatgcttgagaagttgatgttatgtttctctt 408  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  28926956 tatgctcttgcccgagtttagatttcaaacactctatatgcatatcctgaatcctgattatataaaaaatacttgagaagttggtgttatgtttctctt 28926858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 28904094 - 28903934
Alignment:
Q  75 tgtgactttcttttttatggttgattaaagggattgccttaagacctatcatgctaaatgcctgggtcattatgcttcatttatggagattgacaataat 174  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||  |    ||  ||||||| ||| || ||| |||| |||      
T  28904094 tgtgactttcttttttatggttgattacagggattgccttaaaacctatcatgctgaatgtgtaaaacaagatgcttcctttttgaagaatgacgatagg 28903995  T
Q  175 tggtgttgtggtaagctgcttcatcttttatttttgcctttatcgtaggaaattcaattac 235  Q
    ||||||||||||||||||||||| | |||||||||||||||||  ||||  ||||||||||    
T  28903994 tggtgttgtggtaagctgcttcaccgtttatttttgcctttattatagggcattcaattac 28903934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 28894197 - 28893991
Alignment:
Q  13 atcactatcgttagcatgttttactgttggatacttggatcattttgtaaatgacat-------ttttgt--gtgactttcttttttatggttgattaaa 103  Q
    ||||||||| |||| ||||||||||||||||||||   |||||| |||||| |||||       ||||||  |||||||||||||||||||||||||| |    
T  28894197 atcactatcattagtatgttttactgttggatactaaaatcattatgtaaa-gacatattttggttttgtttgtgactttcttttttatggttgattaca 28894099  T
Q  104 gggattgccttaagacctatcatgctaaatgcctgggtcattatgcttcatttatggagattgacaataattggtgttgtggtaagctgcttcatctttt 203  Q
    || |||||||||| |||||||||||| ||||||||||  |  ||| ||| ||| ||   | |||  |||||||||||||||||||| ||||||| | |||    
T  28894098 ggaattgccttaaaacctatcatgctgaatgcctggggaaagatgattcctttttgacaaatgatgataattggtgttgtggtaagttgcttcaccgttt 28893999  T
Q  204 atttttgc 211  Q
    | ||||||    
T  28893998 acttttgc 28893991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 217
Target Start/End: Complemental strand, 28938687 - 28938554
Alignment:
Q  83 tcttttttatggttgattaaagggattgccttaagacctatcatgctaaatgcctgggtcattatgcttcatttatggagattgacaataattggtgttg 182  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||| ||  | || ||  ||| ||| ||| || ||| |||| || ||||||||||    
T  28938687 tcttttttatggttgattaaaggaattgccttaaaacctatcatgctaattgtgttggccaagatgattcctttctgaagaatgacgattattggtgttg 28938588  T
Q  183 tggtaagctgcttcatcttttatttttgcctttat 217  Q
    ||||||| ||||| |   |||||||||||||||||    
T  28938587 tggtaag-tgctttaatgtttatttttgcctttat 28938554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 28917870 - 28917730
Alignment:
Q  75 tgtgactttcttttttatggttgattaaagggattgccttaagacctatcatgctaaatgcctgggtcattatgcttcatttatggagattgacaataat 174  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||  ||||||| ||  ||||  ||   ||  |||| || ||| ||  || ||||||||      
T  28917870 tgtgattttcttttttatggttgattacagggattgctttaaagcctatcacgcggaatgtgtgaaacaagatgcctcctttttgacgaatgacaatagg 28917771  T
Q  175 tggtgttgtggtaagctgcttcatcttttatttttgccttt 215  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  28917770 tggtgttgtggtaagctgcttcaccgtttatttttgccttt 28917730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 28893892 - 28893832
Alignment:
Q  348 tgcatatcctgaatcctgattatataaaaaatgcttgagaagttgatgttatgtttctctt 408  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||  |||||| ||| ||||    
T  28893892 tgcatatcctgaatcctgattaagtaaaaaaggcttgagaagttagtgttatatttgtctt 28893832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 28917645 - 28917602
Alignment:
Q  348 tgcatatcctgaatcctgattatataaaaaatgcttgagaagtt 391  Q
    ||||||||||||||||||||||| | |||||| |||||||||||    
T  28917645 tgcatatcctgaatcctgattatgtcaaaaatacttgagaagtt 28917602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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