View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_low_19 (Length: 387)

Name: NF6776_low_19
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6776_low_19
NF6776_low_19
[»] chr1 (3 HSPs)
chr1 (10-144)||(46001289-46001423)
chr1 (323-384)||(46000758-46000819)
chr1 (172-251)||(52685080-52685159)
[»] chr8 (2 HSPs)
chr8 (172-251)||(36090481-36090560)
chr8 (181-251)||(3044778-3044848)
[»] chr3 (1 HSPs)
chr3 (172-251)||(33717289-33717368)
[»] chr7 (1 HSPs)
chr7 (174-252)||(18930590-18930668)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 46001423 - 46001289
Alignment:
Q  10 acatcaacaaacatacacatgtaacacatactaagggatctatataatattgcagcaactaaatcttagcaagtggttgggagttcaattctcaattaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46001423 acatcaacaaacatacacatgtaacacatactaagggatctatataatattgcagcaactaaatcttagcaagtggttgggagttcaattctctattaga 46001324  T
Q  110 attgggaggggagaactcactttatgtgtgtaact 144  Q
    |||||||||||||||||||||||||||||||||||    
T  46001323 attgggaggggagaactcactttatgtgtgtaact 46001289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 46000819 - 46000758
Alignment:
Q  323 atcatctttctgcacgtccatttgaacttccttctgcatataataagtatttaacttctcat 384  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46000819 atcatctttctgcacatccatttgaacttccttctgcatataataagtatttaacttctcat 46000758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 52685080 - 52685159
Alignment:
Q  172 ggctgaaaaagaatcatcggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc 251  Q
    |||||||| |||| |||||||||||||||||||||| |||| |||||||||| | |||||||| |||  |||||| ||||    
T  52685080 ggctgaaagagaaccatcggcaatcttaatttttaaattacctgcacaaggactatatgaagaaaacatactagactctc 52685159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 36090481 - 36090560
Alignment:
Q  172 ggctgaaaaagaatcatcggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc 251  Q
    |||||||| |||| |||| ||||||||||||||||| |||| |||||||||| | |||||||| |||  |||||| ||||    
T  36090481 ggctgaaagagaaccatcagcaatcttaatttttaaattacttgcacaaggactatatgaagaaaacatactagactctc 36090560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 3044848 - 3044778
Alignment:
Q  181 agaatcatcggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc 251  Q
    |||| |||||||||||||||||||||| |||| |||||||||| | |||||||| |||  |||||| ||||    
T  3044848 agaaccatcggcaatcttaatttttaaattacctgcacaaggactatatgaagaaaacatactagactctc 3044778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 33717368 - 33717289
Alignment:
Q  172 ggctgaaaaagaatcatcggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc 251  Q
    |||||||| |||| |||| ||||||||||||||||| |||| |||||||||| | |||||||| |||  |||||| ||||    
T  33717368 ggctgaaagagaaccatcagcaatcttaatttttaaattacctgcacaaggactatatgaagaaaacatactagactctc 33717289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 18930668 - 18930590
Alignment:
Q  174 ctgaaaaagaatcatcggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctct 252  Q
    |||||| |||| |||| ||||||||||||||||| |||| |||||||||| | || ||||| |||  |||||| |||||    
T  18930668 ctgaaagagaaccatcagcaatcttaatttttaaattacctgcacaaggactataggaagaaaacatactagactctct 18930590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University