View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6776_low_2 (Length: 595)
Name: NF6776_low_2
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_2 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 42 - 595
Target Start/End: Original strand, 22917454 - 22918009
Alignment:
| Q |
42 |
gtatcctcgttgagcaagatgtccaaca--gagtctttatgaaactccagatatccatgagtggttcgtgggacctcttgtttggcttgattcttccact |
139 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22917454 |
gtatcctcgttgagcaagatgtccaacaccgagtctttatgaaactccagatagccatgagtggttcgtgggacctcttgtttggcttgattcttccact |
22917553 |
T |
|
| Q |
140 |
tcgcgcatatttcgttgatattgtgcacatgtgcgcaaatttcctttggaatatggcttcatgctcatagcttcttcggtaagtggcactataaacatgg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22917554 |
tcgcgcatatttcgttgatattgtgcacatgtgcgcaaatttcctttggaatatggcttcatactcatagcttcttcggtaagtggcactataaacatgg |
22917653 |
T |
|
| Q |
240 |
agtgttgcttaattactccattatccagttctgttgagtttttaccaagtatgataacttcacgaccttcgtatactttagtaaacatgaaatacattca |
339 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22917654 |
agtgctgcttaattactctattatccagttctgttgagtttttaccaagtctgataacttcacgaccttcgtatactttagtaaacatgaaatacattca |
22917753 |
T |
|
| Q |
340 |
actaactcgcatttggttgtatttgtattcacccaacccaccatcgaacaagaaaaacatgtctaaccctaaatcacttgtttgttgatttcatcgaata |
439 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| |||||| |
|
|
| T |
22917754 |
actaactcgcatttggttgtatttgtactcaccgaacccaccatcgaacaagaaaaacatgcctaaccctaaatcgcttgtttgtcgatttcggcgaata |
22917853 |
T |
|
| Q |
440 |
tgtaacatattttcgtttagagttatgatctcttgacttcgtgtcttgaaacagacgacaacattaagatacataaataaaaaagtacgaagtttataat |
539 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22917854 |
tgtaacatattttcgtttagagttatgatatcttgacttcgtgtcttgaaacagacgacgacattaagatacataaataaacaagtacgaagtttataat |
22917953 |
T |
|
| Q |
540 |
tttcaacacaaatattaatcgaaatatatcaaatctccttttccttaacaccatac |
595 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
22917954 |
tttcaacacgaatattaatcgaaatatatcaaatctcctattccttaacacgatac |
22918009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University