View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_low_20 (Length: 386)

Name: NF6776_low_20
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6776_low_20
NF6776_low_20
[»] chr7 (8 HSPs)
chr7 (192-363)||(37526386-37526557)
chr7 (197-363)||(45235010-45235175)
chr7 (192-336)||(40167216-40167362)
chr7 (204-291)||(46767990-46768077)
chr7 (198-336)||(20078729-20078868)
chr7 (277-363)||(25778521-25778607)
chr7 (205-304)||(45358025-45358121)
chr7 (279-339)||(29638911-29638971)
[»] chr2 (9 HSPs)
chr2 (59-224)||(19905739-19905907)
chr2 (254-380)||(19905489-19905613)
chr2 (199-363)||(31938041-31938204)
chr2 (193-363)||(30762788-30762950)
chr2 (105-166)||(38396998-38397059)
chr2 (205-254)||(30827681-30827730)
chr2 (242-333)||(4809540-4809632)
chr2 (3-40)||(19909018-19909055)
chr2 (330-363)||(36070263-36070296)
[»] chr1 (13 HSPs)
chr1 (201-363)||(527903-528066)
chr1 (197-363)||(40032247-40032413)
chr1 (217-341)||(23930325-23930450)
chr1 (197-355)||(15536237-15536391)
chr1 (228-351)||(18341584-18341707)
chr1 (191-343)||(40205092-40205245)
chr1 (240-363)||(44309553-44309676)
chr1 (197-322)||(47148320-47148445)
chr1 (197-267)||(22545131-22545202)
chr1 (228-344)||(50154081-50154197)
chr1 (272-338)||(34643989-34644055)
chr1 (280-349)||(44317925-44317994)
chr1 (110-150)||(8710903-8710943)
[»] chr5 (12 HSPs)
chr5 (197-363)||(36447594-36447760)
chr5 (197-363)||(12164464-12164632)
chr5 (197-326)||(7719661-7719790)
chr5 (240-336)||(28234659-28234755)
chr5 (278-359)||(14913568-14913649)
chr5 (280-326)||(15405374-15405420)
chr5 (277-347)||(3737103-3737173)
chr5 (106-165)||(29340913-29340972)
chr5 (235-301)||(15405420-15405486)
chr5 (198-266)||(14913958-14914026)
chr5 (212-347)||(36282559-36282694)
chr5 (271-310)||(35607324-35607364)
[»] chr8 (6 HSPs)
chr8 (197-363)||(7243797-7243963)
chr8 (197-327)||(30467145-30467275)
chr8 (228-363)||(38828918-38829052)
chr8 (205-363)||(23690175-23690329)
chr8 (205-331)||(37244873-37244997)
chr8 (226-326)||(3447716-3447816)
[»] chr6 (7 HSPs)
chr6 (197-363)||(24324257-24324417)
chr6 (197-323)||(5330584-5330710)
chr6 (197-279)||(32429516-32429598)
chr6 (278-363)||(32429154-32429241)
chr6 (226-293)||(2158453-2158520)
chr6 (106-164)||(29229025-29229083)
chr6 (252-311)||(6563829-6563888)
[»] chr3 (7 HSPs)
chr3 (197-323)||(54776863-54776989)
chr3 (210-363)||(12907285-12907438)
chr3 (197-361)||(47804048-47804209)
chr3 (197-251)||(12906567-12906621)
chr3 (119-164)||(29586254-29586299)
chr3 (108-161)||(33632743-33632796)
chr3 (293-326)||(54433093-54433126)
[»] chr4 (10 HSPs)
chr4 (255-363)||(5472568-5472676)
chr4 (192-267)||(5472699-5472774)
chr4 (236-363)||(35619377-35619507)
chr4 (221-313)||(23850024-23850116)
chr4 (250-363)||(24294292-24294405)
chr4 (228-360)||(22027126-22027259)
chr4 (242-324)||(38499737-38499819)
chr4 (197-244)||(13073037-13073084)
chr4 (218-329)||(54166679-54166789)
chr4 (280-331)||(52347512-52347563)
[»] scaffold0221 (1 HSPs)
scaffold0221 (220-363)||(6630-6773)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 192 - 363
Target Start/End: Original strand, 37526386 - 37526557
Alignment:
Q  192 gggacttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattct 291  Q
    |||| ||||||| ||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  37526386 gggatttggatcatctccattgaaaattcttttaagttttctccattttcaatctccaccattaaaatacaacaaccactttttattataatttaattct 37526485  T
Q  292 cattttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    |||||||||||| || |||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||    
T  37526486 cattttctctcttatgtttgatggttgagattccacttgagaaaatttgagagaattttcaatggagagaat 37526557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 197 - 363
Target Start/End: Complemental strand, 45235175 - 45235010
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    ||||||| ||| ||||||||||| |||  |||||||||||||||||||||||| |||| |||||||||||| |||||| |||| ||||||||||||||||    
T  45235175 ttggatcatcttcattgaaaattctcttaagttttctccattttcaatctccatcattgaaatacaacaac-actttttattaaaatttaattctcattt 45235077  T
Q  297 tctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    ||||||| || |||||||||||||||||||||||| |||| |||| |||||||| || | |||||||    
T  45235076 tctctcttatgtttgatggttgagatttcacttgagaaaacttgagagaattttcaacgtagagaat 45235010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 336
Target Start/End: Original strand, 40167216 - 40167362
Alignment:
Q  192 gggacttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattata--atttaatt 289  Q
    |||| |||||| ||||||||||||| |||||||   ||||||||||||| |||||||| ||||||||  ||  ||| ||||||  |||||  |||||| |    
T  40167216 gggatttggattctctccattgaaatttttctcagattttctccatttttaatctccatcattaaaagccattaaccacttttttttatacaatttaact 40167315  T
Q  290 ctcattttctctctcatatttgatggttgagatttcacttgaaaaaa 336  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  40167316 ctcattttctctctcatatttaatggttaagatttcacttgagaaaa 40167362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 204 - 291
Target Start/End: Complemental strand, 46768077 - 46767990
Alignment:
Q  204 ctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattct 291  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||  ||||||  |||||||||||||||    
T  46768077 ctctccattgaaaattttctcaagttttctccattttcaatctccacaaataaaatgcaacaagcacttttttttataatttaattct 46767990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 336
Target Start/End: Original strand, 20078729 - 20078868
Alignment:
Q  198 tggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcatt-ataatttaattctcattt 296  Q
    ||||| |||| |||||||||||||||| |  |||||||||| |||||||| | || |||||||||||||||||||||  ||  |||||||||||||||||    
T  20078729 tggattctcttcattgaaaattttctccaactttctccattgtcaatctctatcaataaaatacaacaactacttttttttcttaatttaattctcattt 20078828  T
Q  297 tctctctcatatttgatggttgagatttcacttgaaaaaa 336  Q
    ||||| | |  ||| ||||||| |||| || |||||||||    
T  20078829 tctcttttaagtttaatggttgcgattccatttgaaaaaa 20078868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 25778607 - 25778521
Alignment:
Q  277 ttataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    ||||||||||| ||||| ||||||| |||| ||| |||||||| ||||||||| |||||| || | |||||||| ||| ||||||||    
T  25778607 ttataatttaactctcactttctctttcattttttatggttgaaatttcacttaaaaaaacttcagagaattttcaattgagagaat 25778521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 45358121 - 45358025
Alignment:
Q  205 tctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctc 304  Q
    |||||||| |||||| |||| | |||||||||||||||| || |||| ||||||||||||||| | ||||| || |||||| |||   ||||||||||||    
T  45358121 tctccattaaaaattctctcaaattttctccattttcaaacttcacccttaaaatacaacaaccatttttccttgtaatttcatt---attttctctctc 45358025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 29638911 - 29638971
Alignment:
Q  279 ataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaattt 339  Q
    |||||||||||  ||||||||||||||| ||| || |||||||||| |||| ||| |||||    
T  29638911 ataatttaatttacattttctctctcatgtttaattgttgagatttaacttaaaagaattt 29638971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 19905907 - 19905739
Alignment:
Q  59 gtgagtcccaccatcattattacattt-agtttttcgaannnnnnnngt--ctatatcttttcaaatggatgaaatggagagaaaaataaattgataaga 155  Q
    ||||||||||||||||||||||| ||| |||||||||||        ||  |||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  19905907 gtgagtcccaccatcattattactttttagtttttcgaattttttttgtatctatatcttttcaaatggatgaaatggagagaacgataaattgagaaga 19905808  T
Q  156 tcttaactcgtagataagagatcgggttgtagatacgggacttggatcctctccattgaaaattttctc 224  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19905807 tcttaactcgtagataagagattgggttgtagatacaggacttggatcctctccattgaaaattttctc 19905739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 254 - 380
Target Start/End: Complemental strand, 19905613 - 19905489
Alignment:
Q  254 taaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19905613 taaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaacttgaaagaatttttaa 19905514  T
Q  354 tggagagaatgttaagaatacaatcac 380  Q
    |  |||||||   ||||||||||||||    
T  19905513 t--agagaatcccaagaatacaatcac 19905489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 199 - 363
Target Start/End: Original strand, 31938041 - 31938204
Alignment:
Q  199 ggatcctctccattgaaaattttctcgagttttctccattttcaatctccacca-ttaaaatacaacaactacttttcattataatttaattctcatttt 297  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||  |||| ||||||||  ||||||||||| ||||||||||||||||||| |||    
T  31938041 ggatcctctccattgaaaattttctcaaattttctccattttcaatctttaccaattaaaatattacaactacttt-cattataatttaattctcacttt 31938139  T
Q  298 ctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    |||||||||  ||||||||||||||||||| ||| |||| || | |||||||| ||| ||||||||    
T  31938140 ctctctcatgattgatggttgagatttcacatgagaaaactt-agagaattttaaatagagagaat 31938204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 363
Target Start/End: Original strand, 30762788 - 30762950
Alignment:
Q  193 ggacttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctc 292  Q
    |||||||||| ||||||||||||| |||| ||  |||||||||||||| ||| |||| || |||||| |   | | | ||||| ||||||||            
T  30762788 ggacttggattctctccattgaaatttttttcaggttttctccatttttaatatccatcactaaaatccgctatcaatttttctttataatt-------- 30762879  T
Q  293 attttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||  ||| | |||| | ||||||||||||    
T  30762880 attttctctctcttatttaatggttgagatttcacttgagaaaacatgagaaaattctcaatggagagaat 30762950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 38397059 - 38396998
Alignment:
Q  105 gtctatatcttttcaaatggatgaaatggagagaaaaataaattgataagatcttaactcgt 166  Q
    |||||||||| | ||||| |||||||||||||||||||||||| || || ||||||||||||    
T  38397059 gtctatatctctccaaattgatgaaatggagagaaaaataaatggagaatatcttaactcgt 38396998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 30827681 - 30827730
Alignment:
Q  205 tctccattgaaaattttctcgagttttctccattttcaatctccaccatt 254  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||| ||||    
T  30827681 tctccgttgaaaattctctcaagttttctccattttcaatctccatcatt 30827730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 4809632 - 4809540
Alignment:
Q  242 aatctccaccattaaaatacaacaactacttttcattataatttaattctca-ttttctctctcatatttgatggttgagatttcacttgaaa 333  Q
    |||||| ||||||||||| ||  ||||||||||| ||||||||||| ||| | |||| ||||| || |||||||||||| |||| | ||||||    
T  4809632 aatctctaccattaaaattcactaactacttttctttataatttaactcttatttttttctctaatgtttgatggttgaaattttatttgaaa 4809540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 19909055 - 19909018
Alignment:
Q  3 aatgagatcaaaacatcttaacgtgtaaattcaatatg 40  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  19909055 aatgagatcaaaacatcttaacctgtatattcaatatg 19909018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 363
Target Start/End: Original strand, 36070263 - 36070296
Alignment:
Q  330 gaaaaaatttgaaagaatttttaatggagagaat 363  Q
    ||||||||||||||||||||| ||||||||||||    
T  36070263 gaaaaaatttgaaagaattttcaatggagagaat 36070296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 201 - 363
Target Start/End: Complemental strand, 528066 - 527903
Alignment:
Q  201 atcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaa-tacaacaactacttttcattataatttaattctcattttct 299  Q
    |||||||||||| ||||||||||| | ||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  528066 atcctctccattaaaaattttctcaaattttctccattttcaatttccactattaaaaatacaacaaccacttttcattataatttaattctcactttct 527967  T
Q  300 ctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    |||||||  ||||||||||||||| ||| ||| |||| || | |||||||| ||||||||||||    
T  527966 ctctcatgattgatggttgagattccacatgagaaaactttagagaattttcaatggagagaat 527903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 40032247 - 40032413
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    ||||||| | |||||||||| |||| || | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  40032247 ttggatcatttccattgaaatttttttcaaattttctccattttcaatctacaccattaaaatacaacaaccacttttcattataatttaattctcactt 40032346  T
Q  297 tctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    ||||||||||  ||||||||||||||| ||| ||| |||| || | | |||||| ||||||||||||    
T  40032347 tctctctcatgattgatggttgagattccacatgagaaaacttaagacaattttcaatggagagaat 40032413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 217 - 341
Target Start/End: Complemental strand, 23930450 - 23930325
Alignment:
Q  217 attttctcgagttttctccattttcaatctccaccattaaaatacaacaactac-ttttcattataatttaattctcattttctctctcatatttgatgg 315  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||    
T  23930450 attttcttaagttttctccattttcaatctccaccattaaaatacaacaaccaaattttcattataatttaattctcattttctctctcatatttgatgg 23930351  T
Q  316 ttgagatttcacttgaaaaaatttga 341  Q
    ||||||||  |||| | |||||||||    
T  23930350 ttgagattctacttaagaaaatttga 23930325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 15536237 - 15536391
Alignment:
Q  197 ttggatcctctccattgaaaattttctcga-gttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcatt 295  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||  ||||   || |||||||||||||| |    
T  15536237 ttggattctctccattgaaaattttctctaagttttctccattttcaatcttcaccattaaaatacaacaac--cttt---ttttaatttaattctcaat 15536331  T
Q  296 ttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatg 355  Q
    ||||||||||| ||| || ||||||||| ||||||| ||||||||| |||||||| ||||    
T  15536332 ttctctctcatgtttaattgttgagattccacttgagaaaatttgacagaattttcaatg 15536391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 351
Target Start/End: Complemental strand, 18341707 - 18341584
Alignment:
Q  228 ttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcac 327  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||| ||||||| |||||| | |||    
T  18341707 ttttctccatttttaatctccaacattaaaatacaacaactatttttctttattttttaattctcattttctctctcatgtttgatgattgagaatccac 18341608  T
Q  328 ttgaaaaaatttgaaagaattttt 351  Q
    ||  |||||||||| |||||||||    
T  18341607 ttagaaaaatttgagagaattttt 18341584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 343
Target Start/End: Original strand, 40205092 - 40205245
Alignment:
Q  191 cgggacttggatcctctccattgaaaattttct-cgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaatt 289  Q
    ||||| |||||||||| ||||||||| |||| | | ||||||||||||||| |||||||| ||||||||  ||  ||| ||||||| |||||||||||      
T  40205092 cgggatttggatcctccccattgaaattttttttcaagttttctccatttttaatctccatcattaaaacccactaaccacttttctttataatttaaca 40205191  T
Q  290 ctcattttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaa 343  Q
    ||||||||||||||||||||||||||||||||||||| | || |||| ||||||    
T  40205192 ctcattttctctctcatatttgatggttgagatttcaatggagaaaacttgaaa 40205245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 240 - 363
Target Start/End: Complemental strand, 44309676 - 44309553
Alignment:
Q  240 tcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaattt 339  Q
    ||||||| |||| || ||||||| ||||  |||||  || |||||||||| |||||| ||||| |||||||||||||||||||||||||| |||||| ||    
T  44309676 tcaatctacaccgtttaaatacaccaacctcttttacttttaatttaattttcatttcctctcccatatttgatggttgagatttcactttaaaaaaatt 44309577  T
Q  340 gaaagaatttttaatggagagaat 363  Q
    ||||||| ||||||||||||||||    
T  44309576 gaaagaaattttaatggagagaat 44309553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 47148445 - 47148320
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    |||||| ||||||||| ||| || |||| |||||||||| || | ||| || |||||||||||| | || | ||||||| ||||||||||||| ||||||    
T  47148445 ttggattctctccattaaaatttctctcaagttttctccgttcttaatttctaccattaaaatatatcagccacttttctttataatttaattttcattt 47148346  T
Q  297 tctctctcatatttgatggttgagat 322  Q
    | |||||||| |||||||||||||||    
T  47148345 tatctctcatgtttgatggttgagat 47148320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 22545131 - 22545202
Alignment:
Q  197 ttggatcctctccattgaaaattttctcga-gttttctccattttcaatctccaccattaaaatacaacaac 267  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  22545131 ttggattctctccattgaaaattttctctaagttttctccattttcaatcttcaccattaaaatacaacaac 22545202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 344
Target Start/End: Original strand, 50154081 - 50154197
Alignment:
Q  228 ttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcac 327  Q
    ||||||| ||||| |||||||| ||||||||  || |||| ||||||| ||||||||||| ||||| ||||||| |||| | | |||||| | |||||||    
T  50154081 ttttctcaatttttaatctccatcattaaaactcatcaaccacttttctttataatttaactctcactttctctatcatgtctaatggttaaaatttcac 50154180  T
Q  328 ttgaaaaaatttgaaag 344  Q
     |||||||| |||||||    
T  50154181 atgaaaaaacttgaaag 50154197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 34644055 - 34643989
Alignment:
Q  272 tttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaatt 338  Q
    |||| ||||||||||||||| ||||||||| |||| |||||| ||||||||||||||||| ||||||    
T  34644055 tttctttataatttaattcttattttctctttcatgtttgatagttgagatttcacttgagaaaatt 34643989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 44317994 - 44317925
Alignment:
Q  280 taatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaattt 349  Q
    |||||||||| |||||||||| || || ||||||||||||| || ||||| | |||| |||| |||||||    
T  44317994 taatttaattttcattttctcacttatttttgatggttgagtttacacttaagaaaaattgagagaattt 44317925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 8710943 - 8710903
Alignment:
Q  110 tatcttttcaaatggatgaaatggagagaaaaataaattga 150  Q
    |||||||||||||||| ||||||||||||  ||||||||||    
T  8710943 tatcttttcaaatggaagaaatggagagactaataaattga 8710903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 36447594 - 36447760
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    |||||||||||  ||||||||||||||  | ||||||||||||||||||| ||||||||||||||||| |||| || | | |||||||||||| ||| ||    
T  36447594 ttggatcctctttattgaaaattttcttcaattttctccattttcaatcttcaccattaaaatacaactactatttgttagtataatttaattatcactt 36447693  T
Q  297 tctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    ||||||||||  |||||||||||||||| || ||||||||||||| |||||||| ||||||||||||    
T  36447694 tctctctcatgattgatggttgagattttacatgaaaaaatttgagagaattttcaatggagagaat 36447760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 197 - 363
Target Start/End: Complemental strand, 12164632 - 12164464
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctca--t 294  Q
    |||||| ||||||||||||||||||||  ||||||||  |||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||  |    
T  12164632 ttggattctctccattgaaaattttctgaagttttctttattttcaatctccatctttaaaatacaacaactatttttcattataatttatttctcactt 12164533  T
Q  295 tttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    | |||||||||| |||||||||||||||| ||||||  || | |||| |||||||| ||||||||||||    
T  12164532 tctctctctcatgtttgatggttgagattccacttgtgaagacttgagagaattttcaatggagagaat 12164464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 197 - 326
Target Start/End: Original strand, 7719661 - 7719790
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    ||||||||||| ||||||||| ||| || ||||||||||||||| ||| |||||||||||||  ||  ||| ||||||| |||||||||||  |||||||    
T  7719661 ttggatcctcttcattgaaaactttttcaagttttctccatttttaatatccaccattaaaaatcactaaccacttttctttataatttaacactcattt 7719760  T
Q  297 tctctctcatatttgatggttgagatttca 326  Q
    ||||||||||||||||||||||||||||||    
T  7719761 tctctctcatatttgatggttgagatttca 7719790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 28234755 - 28234659
Alignment:
Q  240 tcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaa 336  Q
    |||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||| ||| ||||    
T  28234755 tcaatctccacggttaaaatacaacaatcacttttcattataatttaattctcattttctctctcatgattgatggttgagattccacatgagaaaa 28234659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 14913649 - 14913568
Alignment:
Q  278 tataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggaga 359  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| || | |||||||| ||||||||    
T  14913649 tataatttaattctcactttctctctcatgtttgatggttgagatttcacttgagaaaacttaagagaattttcaatggaga 14913568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 15405420 - 15405374
Alignment:
Q  280 taatttaattctcattttctctctcatatttgatggttgagatttca 326  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  15405420 taatttaatactcattttctctctcatatttgatggttgagatttca 15405374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 3737173 - 3737103
Alignment:
Q  277 ttataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaat 347  Q
    ||||||||||||| ||| ||| |||||||| |||||||||||||||| ||||||||| || |||| |||||    
T  3737173 ttataatttaattatcaatttgtctctcatgtttgatggttgagattccacttgaaataacttgagagaat 3737103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 29340972 - 29340913
Alignment:
Q  106 tctatatcttttcaaatggatgaaatggagagaaaaataaattgataagatcttaactcg 165  Q
    ||||||||| | |||||| ||||||||||||||| ||||||| || ||||||||||||||    
T  29340972 tctatatctctccaaatgaatgaaatggagagaataataaatggagaagatcttaactcg 29340913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 15405486 - 15405420
Alignment:
Q  235 cattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctct 301  Q
    |||||| |||||||||||||||||  ||  ||| |||||||||| ||||||||| ||||||||||||    
T  15405486 catttttaatctccaccattaaaacccactaaccacttttcattgtaatttaatactcattttctct 15405420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 14914026 - 14913958
Alignment:
Q  198 tggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaa 266  Q
    |||||||||||||||||   |||| || ||||||||| ||||| |||||||| | ||||||||||||||    
T  14914026 tggatcctctccattgatttttttttcaagttttctctatttttaatctccatcgttaaaatacaacaa 14913958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 347
Target Start/End: Complemental strand, 36282694 - 36282559
Alignment:
Q  212 tgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttg 311  Q
    |||||||||| |||| ||||||||||||||||||| ||   ||||||| |  | |||||||||| |  |||||||| | |  |||||||||  || ||||    
T  36282694 tgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctactacttttcttagtaatttaactttagttttctctcatatgtttg 36282595  T
Q  312 atggttgagatttcacttgaaaaaatttgaaagaat 347  Q
    | ||||||||||||| || | |||| |||| |||||    
T  36282594 aaggttgagatttcatttaagaaaaattgagagaat 36282559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 35607324 - 35607364
Alignment:
Q  271 ttttcattataatttaat-tctcattttctctctcatattt 310  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  35607324 ttttctttataatttaatatctcattttctctctcatattt 35607364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 7243797 - 7243963
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    ||||||||||||| |||||||||||||  | ||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||||| ||| ||    
T  7243797 ttggatcctctccgttgaaaattttcttcaattttctccattttcaatcttcactattaaaatacaacaactactattcgttataatttaattttcactt 7243896  T
Q  297 tctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    ||| ||||||  ||||||||||||||||||| ||| ||||||| | | |||||| ||| ||||||||    
T  7243897 tctttctcatgattgatggttgagatttcacatgagaaaatttaagaaaattttcaatagagagaat 7243963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 197 - 327
Target Start/End: Original strand, 30467145 - 30467275
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    |||||| |||||||||||||||| |||  | ||||||||||||||||||| || ||||| ||||||||||| ||||||| ||||||||||||| ||| ||    
T  30467145 ttggattctctccattgaaaattctctgaaattttctccattttcaatcttcatcattataatacaacaaccacttttctttataatttaattttcactt 30467244  T
Q  297 tctctctcatatttgatggttgagatttcac 327  Q
    |||||||||||||||||||||||||||||||    
T  30467245 tctctctcatatttgatggttgagatttcac 30467275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 228 - 363
Target Start/End: Original strand, 38828918 - 38829052
Alignment:
Q  228 ttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcac 327  Q
    ||||||||||||||||| | ||| |||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||    
T  38828918 ttttctccattttcaattttcac-attaaaatacaataaccaattttcattataatttaattcttattttctctctcatatttaatggttgagattccac 38829016  T
Q  328 ttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    |||| ||||||||| |||||||| ||  ||||||||    
T  38829017 ttgagaaaatttgagagaattttcaactgagagaat 38829052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 205 - 363
Target Start/End: Original strand, 23690175 - 23690329
Alignment:
Q  205 tctccattgaaaattttctcga-gttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctct 303  Q
    |||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||||||||||  ||||   || |||||||||||| | |||||||||    
T  23690175 tctccattgaaaattttctctaagttttcttcattttcaatcttcaccattaaaatacaacaac--cttt---ttttaatttaattctgaatttctctct 23690269  T
Q  304 catatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    ||| ||| || ||||||||| ||||||| ||||||||| |||||||| |||| |||||||    
T  23690270 catgtttaattgttgagattccacttgagaaaatttgacagaattttcaatgtagagaat 23690329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 205 - 331
Target Start/End: Complemental strand, 37244997 - 37244873
Alignment:
Q  205 tctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctc 304  Q
    |||||||||||||||||||  | |||||| |||||||||||| |||||||||||||||||||| | ||||  ||||||||||||||||| ||||||||||    
T  37244997 tctccattgaaaattttctgaacttttcttcattttcaatcttcaccattaaaatacaacaaccattttt--ttataatttaattctcactttctctctc 37244900  T
Q  305 atatttgatggttgagatttcacttga 331  Q
    || ||| || || |||||| |||||||    
T  37244899 atgtttaattgtggagattccacttga 37244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 326
Target Start/End: Complemental strand, 3447816 - 3447716
Alignment:
Q  226 agttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttc 325  Q
    ||||||||||||||| |||||||||||||||||| ||   || ||||||| |||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  3447816 agttttctccatttttaatctccaccattaaaatccattgaccacttttctttataatttaacactcattttctctctcatatttaatggttgagatttc 3447717  T
Q  326 a 326  Q
    |    
T  3447716 a 3447716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 24324257 - 24324417
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    ||||||| |||| ||||||||||||||| | |||| |||||||||| |||| |||||||||||||||||||||||||||||||    |||||| ||| ||    
T  24324257 ttggatcttctcaattgaaaattttctcaaattttatccattttcattctcaaccattaaaatacaacaactacttttcatta----ttaattatcactt 24324352  T
Q  297 tctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    ||||||||||  ||||||||||||||| ||| ||| |||| |||  |||||||| ||||||||||||    
T  24324353 tctctctcatgattgatggttgagattccacatgagaaaacttg--agaattttcaatggagagaat 24324417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 5330584 - 5330710
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    |||||| ||||||||||||| |||| || | ||||||||||||| |||||| |||| |||||  ||  ||| ||||||| ||||||||||||||||||||    
T  5330584 ttggattctctccattgaaatttttttcaaattttctccatttttaatctctaccactaaaacccactaaccacttttctttataatttaattctcattt 5330683  T
Q  297 tctctctcatatttgatggttgagatt 323  Q
    ||||| |||||||||||||||||||||    
T  5330684 tctctttcatatttgatggttgagatt 5330710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 32429598 - 32429516
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcatta 279  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||    
T  32429598 ttggatcctctccattgaaaattttctcaagttttctccattttcaatctccaccattaaaatataacaaccactattcatta 32429516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 32429241 - 32429154
Alignment:
Q  278 tataatttaattctcattttctctctcatatttgatggttgagatttcac--ttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| |||   |||||||| |||| |||||||| ||||||||||||    
T  32429241 tataatttaattctcactttctctctcataattgatggttgagattccacatatgaaaaaacttgagagaattttcaatggagagaat 32429154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 2158453 - 2158520
Alignment:
Q  226 agttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctca 293  Q
    |||||||||||||||||||||||||||||||||||||||||  | ||||| || ||||||||||||||    
T  2158453 agttttctccattttcaatctccaccattaaaatacaacaatcatttttctttgtaatttaattctca 2158520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 29229083 - 29229025
Alignment:
Q  106 tctatatcttttcaaatggatgaaatggagagaaaaataaattgataagatcttaactc 164  Q
    ||||||||||||| |||||||||||| ||||||| ||||||| || | |||||||||||    
T  29229083 tctatatcttttcgaatggatgaaatcgagagaataataaatggagaggatcttaactc 29229025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 6563888 - 6563829
Alignment:
Q  252 attaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttg 311  Q
    ||||||||||||||| || ||||| ||||||||||||| ||| ||||||| |||| ||||    
T  6563888 attaaaatacaacaattatttttctttataatttaattttcaatttctctttcatgtttg 6563829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 54776863 - 54776989
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||| |||||| |||| |||||  ||  ||| ||||||| ||||||||||||||||||||    
T  54776863 ttggattctctccattgaaatttttctcaagttttctccatttttaatctctaccactaaaacccactaaccacttttctttataatttaattctcattt 54776962  T
Q  297 tctctctcatatttgatggttgagatt 323  Q
    ||||| |||||||||||||||||||||    
T  54776963 tctctttcatatttgatggttgagatt 54776989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 210 - 363
Target Start/End: Original strand, 12907285 - 12907438
Alignment:
Q  210 attgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatt 309  Q
    ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||  |||||| ||||||| |||||||||| ||| |||||||| ||    
T  12907285 attgaaaattttctcaagttttttccattttcaatctccacctttaaaatacaacaagcactttttattataacttaattctcactttttctctcatgtt 12907384  T
Q  310 tgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    | |||||||| ||| ||||| | |||| ||||  ||||||| |||||| |||||    
T  12907385 taatggttgaaattacacttaagaaaacttgagggaattttcaatggaaagaat 12907438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 361
Target Start/End: Original strand, 47804048 - 47804209
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 296  Q
    |||||| ||||||||||||||||  ||| | ||||||||||||||||| | ||||||| ||| ||| |||| ||||||| ||| ||||||| |||||| |    
T  47804048 ttggattctctccattgaaaatt--ctcaatttttctccattttcaatattcaccatttaaacacaccaaccacttttcttta-aatttaactctcatct 47804144  T
Q  297 tctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaatggagaga 361  Q
    | | ||||||||||||||||||||||| ||||||| |||| |||| |||||||| ||||||||||    
T  47804145 tgtttctcatatttgatggttgagattccacttgagaaaaattgagagaattttcaatggagaga 47804209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 12906567 - 12906621
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccacc 251  Q
    |||||| ||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  12906567 ttggattctctctattgaaaattttctcaagttttttccattttcaatctccacc 12906621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 29586299 - 29586254
Alignment:
Q  119 aaatggatgaaatggagagaaaaataaattgataagatcttaactc 164  Q
    ||||||||||||||||||||| ||||||| || | |||||||||||    
T  29586299 aaatggatgaaatggagagaataataaatggagatgatcttaactc 29586254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 33632796 - 33632743
Alignment:
Q  108 tatatcttttcaaatggatgaaatggagagaaaaataaattgataagatcttaa 161  Q
    ||||||| | |||||||||||||||||||||| ||||||| || | ||||||||    
T  33632796 tatatctctccaaatggatgaaatggagagaataataaatggagaggatcttaa 33632743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 54433126 - 54433093
Alignment:
Q  293 attttctctctcatatttgatggttgagatttca 326  Q
    ||||||||| ||||||||||||||||||||||||    
T  54433126 attttctctttcatatttgatggttgagatttca 54433093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 255 - 363
Target Start/End: Complemental strand, 5472676 - 5472568
Alignment:
Q  255 aaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaatttgaaagaatttttaat 354  Q
    |||| |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| |||| |||| |||||||| |||    
T  5472676 aaaacacaacaacgacttttcattataatttaattctcactttctctctcatgtttgatgattgagatttcacttgagaaaacttgagagaattttcaat 5472577  T
Q  355 ggagagaat 363  Q
    |||||||||    
T  5472576 ggagagaat 5472568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 5472774 - 5472699
Alignment:
Q  192 gggacttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaac 267  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  5472774 gggacttgaatcctctccattgaaaattttctcaagttttcttcattttcaatctccaccattaaaacacaacaac 5472699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 363
Target Start/End: Original strand, 35619377 - 35619507
Alignment:
Q  236 attttcaatctccaccattaaaatacaacaactacttttcatt--ataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaa 333  Q
    |||||||||||||||| ||||||||||||||| ||||||  ||  ||||||||||||||| ||||| |||||| ||| |||||||||||| ||||| | |    
T  35619377 attttcaatctccaccgttaaaatacaacaaccacttttttttttataatttaattctcactttctatctcatgtttaatggttgagattccacttaaga 35619476  T
Q  334 aaatttgaaagaattttt-aatggagagaat 363  Q
    ||| |||| ||||||||| ||||||||||||    
T  35619477 aaacttgagagaatttttcaatggagagaat 35619507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 23850024 - 23850116
Alignment:
Q  221 tctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgat 313  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||  ||||||| ||||||| ||| ||||| |||||||||||||||||||    
T  23850024 tctcaagttttctccattttcaatctctaccattaaaataccacaatcacttttctttataatctaactctcactttctctctcatatttgat 23850116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 363
Target Start/End: Complemental strand, 24294405 - 24294292
Alignment:
Q  250 ccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaatttgaa-agaatt 348  Q
    ||||| || ||||||||| ||||||| ||||||||||||| ||||||| || ||||| |||||||||| ||| ||| ||||| ||||||| || ||||||    
T  24294405 ccatttaagtacaacaaccacttttctttataatttaattttcatttt-tcactcatgtttgatggtttagacttcgcttgagaaaatttaaagagaatt 24294307  T
Q  349 tttaatggagagaat 363  Q
    || ||||||||||||    
T  24294306 ttcaatggagagaat 24294292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 360
Target Start/End: Original strand, 22027126 - 22027259
Alignment:
Q  228 ttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctc--tcatatttgatggttgagatttc 325  Q
    ||||||||||||||| ||||||   |||||| ||| |||||||||||| ||||||||||| | | ||||||||||  |||| ||||||||||| ||||      
T  22027126 ttttctccattttcattctccagttttaaaacaca-caactacttttctttataatttaacttttattttctctctgtcatgtttgatggttgtgattca 22027224  T
Q  326 acttgaaaaaatttgaaagaatttttaatggagag 360  Q
    ||||||||||| |||| | | |||||| |||||||    
T  22027225 acttgaaaaaaattgagaaattttttagtggagag 22027259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 38499819 - 38499737
Alignment:
Q  242 aatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagattt 324  Q
    ||||||||||||||| |||||| ||| | ||||| ||||||||||||| | ||||||||||| || ||| ||| |||||||||    
T  38499819 aatctccaccattaatatacaataaccatttttccttataatttaattattattttctctctaatgtttaatgattgagattt 38499737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 13073037 - 13073084
Alignment:
Q  197 ttggatcctctccattgaaaattttctcgagttttctccattttcaat 244  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  13073037 ttggattctctccattgacaattttctcaagttttctccattttcaat 13073084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 54166789 - 54166679
Alignment:
Q  218 ttttctcgagttttctccattttcaatctccaccattaaaatacaacaa-ctacttttcattataatttaattctcattttctctctcatatttgatggt 316  Q
    ||||||| | ||| ||||||||||||||||||| ||||||| | | ||| |   ||||  ||||||||||| ||| |||  ||||||||| |||||||||    
T  54166789 ttttctcaactttcctccattttcaatctccactattaaaacaaatcaatcgttttttttttataatttaactcttatt--ctctctcatgtttgatggt 54166692  T
Q  317 tgagatttcactt 329  Q
    |||||||||||||    
T  54166691 tgagatttcactt 54166679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 52347512 - 52347563
Alignment:
Q  280 taatttaattctcattttctctctcatatttgatggttgagatttcacttga 331  Q
    ||||||||||||||||||||||||||| || | || |||||||| |||||||    
T  52347512 taatttaattctcattttctctctcatgttgggtgattgagattccacttga 52347563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 220 - 363
Target Start/End: Original strand, 6630 - 6773
Alignment:
Q  220 ttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttga 319  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||||||| |  | |  | ||||||||||||||||||||||||| || |||||||||||     
T  6630 ttctcaagttttctccattttcaatatccatcattaaaatacaacaaccatgtattttaataatttaattctcattttctctcttatgtttgatggttgg 6729  T
Q  320 gatttcacttgaaaaaatttgaaagaatttttaatggagagaat 363  Q
    |||| ||||||| |||| | || |||||||| ||||||||||||    
T  6730 gattccacttgagaaaactagagagaattttcaatggagagaat 6773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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