View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_low_25 (Length: 321)
Name: NF6776_low_25
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 44035082 - 44034939
Alignment:
| Q |
50 |
ttttcatttccaagtatcgaagaacacaatcgtgtaaccaaggaaggtgaagagacaaaggaagaacaaaagagtgaacttgggtgagtctaaaaacatt |
149 |
Q |
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| T |
44035082 |
ttttcatttccaagtaccgaagaacacaatcgtgtaaccaaggaaggtgaagagacaaaggaagaacaaaagagtgaacttgggtgagtctaaaaacatt |
44034983 |
T |
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| Q |
150 |
tctaactcagattcaactacaaacaacgttaataatatggtaat |
193 |
Q |
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| T |
44034982 |
tctaactcagattcaactacaaacaacgttaataatatggtaat |
44034939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 44034873 - 44034812
Alignment:
| Q |
259 |
tgatgtctatgtttttaaaaagtgcaggttgtaaattcttcgtatgagacgatgaatttgat |
320 |
Q |
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| T |
44034873 |
tgatgtctatgtttttaaaaagtgcaggttgtaaattcttcgtatgagacgatgaacttgat |
44034812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 37196555 - 37196523
Alignment:
| Q |
144 |
aacatttctaactcagattcaactacaaacaac |
176 |
Q |
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| T |
37196555 |
aacatttctaactcagattcaaccacaaacaac |
37196523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 37196622 - 37196570
Alignment:
| Q |
68 |
gaagaacacaatcgtgtaaccaaggaaggtgaagagacaaaggaagaacaaaa |
120 |
Q |
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| T |
37196622 |
gaagaatacaatcatgcaaccaaggaggataaagagacaaaggaagaacaaaa |
37196570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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