View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_low_27 (Length: 304)

Name: NF6776_low_27
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6776_low_27
NF6776_low_27
[»] chr2 (1 HSPs)
chr2 (13-304)||(40472173-40472464)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 40472173 - 40472464
Alignment:
Q  13 gccttcaccaactgtaaattcaaatttcttgttattactaaccgaaaaaaccttcagaaacttttacaagggatttttctaccataaaatgtgtggaggg 112  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40472173 gccttcaccaactgtaaatttaaatttcttgttattactaaccgaaaaaaccttcagaaacttttacaagggatttttctaccataaaatgtgtggaggg 40472272  T
Q  113 aattcgaatttgaatttgtgattagcagccacaaaatgtatggaggaaactcaaatttaatttgtggctgttttgacagcaacaaactttgtgaaagcta 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40472273 aattcgaattcgaatttgtgattagcagccacaaaatgtatggaggaaactcaaatttaatttgtggctgttttgacatcaacaaactttgtgaaagcta 40472372  T
Q  213 aaatagttgcataagaagcaaatttgtagtagctttgctggtcacaaacattgtgaagatgtagaccaccacaaatttcttcatatctcatt 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40472373 aaatagttgcataagaagcaaatttgtagtagctttgatggtcacaaacattgtgaagatgtagaccaccacaaatttcttcatatctcatt 40472464  T

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