View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_low_3 (Length: 578)

Name: NF6776_low_3
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6776_low_3
NF6776_low_3
[»] chr6 (7 HSPs)
chr6 (13-561)||(27606028-27606579)
chr6 (282-561)||(27340262-27340564)
chr6 (282-561)||(27401002-27401304)
chr6 (201-242)||(27418627-27418668)
chr6 (506-547)||(27368114-27368155)
chr6 (506-547)||(27458461-27458502)
chr6 (285-345)||(25487871-25487931)
[»] chr4 (2 HSPs)
chr4 (201-347)||(5083534-5083680)
chr4 (467-528)||(5083947-5084008)
[»] scaffold0003 (1 HSPs)
scaffold0003 (201-242)||(68695-68736)
[»] chr2 (1 HSPs)
chr2 (285-317)||(17989409-17989441)


Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 13 - 561
Target Start/End: Complemental strand, 27606579 - 27606028
Alignment:
Q  13 tttcgtgttatccatgcctgccctggtgaggacttgtatttcgaattacctctcccaaaagctttatagggaggaacaaatgtgtttcnnnnnnngctga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  27606579 tttcgtgttatccatgcctgccctggtgaggacttgtatttcgaattacctctcccaaaagctttatagggaggaacaaatgtgtttctttttttgctga 27606480  T
Q  113 atgggcagagtttgttctaaccttaaattttcataatgaaacatgttttgtgtttgttgctattgtaagtacttttattaataatt-attcaaaacggtt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |    
T  27606479 atgggcagagtttgttctaaccttaaattttcataatgaaacatgttttgtatttgttgctattgtaagtacttttattaatattttattcaaaacggct 27606380  T
Q  212 atggttggatgggtttcttaaactaaac--actatccttggaggaaaaaagcattctgatctaaaggaactcatatgggataaagaactgaatctgagag 309  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27606379 atggttggatgggtttcttaaactaaacgtactatccttgcaggaaaaaagcattctgatctaaaggaactcatatgggataaagaactgaatctgtgag 27606280  T
Q  310 ccaacattcatgaaatacttttgccagagtcatgacctatgcagtataaattaataatgcaatttgtgtttttatttgaataaatttcaggaggccatcc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27606279 ccaacattcatgaaatacttttgccagagtcatgacctatgcagtataaaataataatgcaatttgtgtttttatttgaataaatttcaggaggccatcc 27606180  T
Q  410 ttggataatgtatttgaatgtcgacgcgtttgtaaactattctttccttggataattgaaagaaaaagaaaatatcatgaagttgatgttgcaaactttt 509  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27606179 ttggataatgtattcgaatgtcgacgcgtttgtaaactattctttccttggataattgaaagaaaaagaaaataccatgaagttgatgttgcaaactttt 27606080  T
Q  510 cttgttcaaggattattgagtctctgattatattaaattatgatgcaacaat 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27606079 cttgttcaaggattattgagtctctgattatattaaattatgatgcaacaat 27606028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 282 - 561
Target Start/End: Complemental strand, 27340564 - 27340262
Alignment:
Q  282 atatgggataaagaactgaatctgagagccaacattcatgaaatacttttgccagagtcatgacctatgcagtataaattaataatgcaatttgtgtttt 381  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||| ||  | |||||||||||||||    
T  27340564 atatgggataaagaactgaatctgagagccaacattcatgagatcgttttgccagagtcatgacctatgcagtataaaatataattgcaatttgtgtttt 27340465  T
Q  382 tatttgaataaattt-ca--------------------ggaggccat--ccttggataatgtatttgaatgtcgacgcgtttgtaaactattctttcctt 458  Q
    ||||||| ||||||| ||                    |||||||||  ||||| |||||||||||||||||||||||||||||||||| || |||||||    
T  27340464 tatttgattaaatttacaaccatgctcataattgctatggaggccatatccttgaataatgtatttgaatgtcgacgcgtttgtaaacttttgtttcctt 27340365  T
Q  459 ggataattgaaagaaaaagaaaatatcatgaagttgatgttgcaaacttttcttgttcaaggattattgagtctctgattatattaaattatgatgcaac 558  Q
    ||||||| |||| || || ||||||||||||||||| |||||| | ||||| ||||| |||||| ||||| |||||||||||||||||| ||| || |||    
T  27340364 ggataatggaaataataaaaaaatatcatgaagttgttgttgctagcttttgttgttaaaggataattgattctctgattatattaaatgatgttgaaac 27340265  T
Q  559 aat 561  Q
    |||    
T  27340264 aat 27340262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 282 - 561
Target Start/End: Complemental strand, 27401304 - 27401002
Alignment:
Q  282 atatgggataaagaactgaatctgagagccaacattcatgaaatacttttgccagagtcatgacctatgcagtataaattaataatgcaatttgtgtttt 381  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||| ||  | |||||||||||||||    
T  27401304 atatgggataaagaactgaatctgagagccaacattcatgagatcgttttgccagagtcatgacctatgcagtataaaatataattgcaatttgtgtttt 27401205  T
Q  382 tatttgaataaattt-ca--------------------ggaggccat--ccttggataatgtatttgaatgtcgacgcgtttgtaaactattctttcctt 458  Q
    ||||||| ||||||| ||                    |||||||||  ||||| |||||||||||||||||||||||||||||||||| || |||||||    
T  27401204 tatttgattaaatttacaaccatgctcataattgctatggaggccatatccttgaataatgtatttgaatgtcgacgcgtttgtaaacttttgtttcctt 27401105  T
Q  459 ggataattgaaagaaaaagaaaatatcatgaagttgatgttgcaaacttttcttgttcaaggattattgagtctctgattatattaaattatgatgcaac 558  Q
    ||||||| |||| || || ||||||||||||||||| |||||| | ||||| ||||| |||||| ||||| |||||||||||||||||| ||| || |||    
T  27401104 ggataatggaaataataaaaaaatatcatgaagttgttgttgctagcttttgttgttaaaggataattgattctctgattatattaaatgatgttgaaac 27401005  T
Q  559 aat 561  Q
    |||    
T  27401004 aat 27401002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 27418668 - 27418627
Alignment:
Q  201 tcaaaacggttatggttggatgggtttcttaaactaaacact 242  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  27418668 tcaaaatggctatggttggatgggtttcttaaactaaacact 27418627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 547
Target Start/End: Complemental strand, 27368155 - 27368114
Alignment:
Q  506 ttttcttgttcaaggattattgagtctctgattatattaaat 547  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||    
T  27368155 ttttcttgttcaatgattattgattctctgattttattaaat 27368114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 547
Target Start/End: Complemental strand, 27458502 - 27458461
Alignment:
Q  506 ttttcttgttcaaggattattgagtctctgattatattaaat 547  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||    
T  27458502 ttttcttgttcaatgattattgattctctgattttattaaat 27458461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 25487871 - 25487931
Alignment:
Q  285 tgggataaagaactgaatctgagagccaacattcatgaaatacttttgccagagtcatgac 345  Q
    |||||||||||| | ||||||||| || |||||||||| || ||||||| |||||| ||||    
T  25487871 tgggataaagaaataaatctgagaaccgacattcatgagatccttttgcaagagtcgtgac 25487931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 201 - 347
Target Start/End: Original strand, 5083534 - 5083680
Alignment:
Q  201 tcaaaacggttatggttggatgggtttcttaaactaaacactatccttggaggaaaaaagcattctgatctaaaggaactcatatgggataaagaactga 300  Q
    ||||||||| ||||||||||||| ||||| ||||||||| | ||||||   |||||| ||| |||||||||| | ||| | ||  | ||||||||||| |    
T  5083534 tcaaaacggctatggttggatggatttctcaaactaaactccatccttactggaaaagagctttctgatctacaagaagtaatgcgtgataaagaactaa 5083633  T
Q  301 atctgagagccaacattcatgaaatacttttgccagagtcatgacct 347  Q
    |||| ||| |  ||||| |||| || ||||||| |||||||||||||    
T  5083634 atctaagaactgacatttatgagatccttttgcaagagtcatgacct 5083680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 5083947 - 5084008
Alignment:
Q  467 gaaagaaaaagaaaatatcatgaagttgatgttgcaaacttttcttgttcaaggattattga 528  Q
    ||||||||||| |||||||  ||||||||| |||||||||||| |||||||| |||| ||||    
T  5083947 gaaagaaaaagcaaatatctggaagttgatattgcaaacttttgttgttcaatgattgttga 5084008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 68695 - 68736
Alignment:
Q  201 tcaaaacggttatggttggatgggtttcttaaactaaacact 242  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  68695 tcaaaatggctatggttggatgggtttcttaaactaaacact 68736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 17989441 - 17989409
Alignment:
Q  285 tgggataaagaactgaatctgagagccaacatt 317  Q
    |||||||||||||||||||||||| ||||||||    
T  17989441 tgggataaagaactgaatctgagaaccaacatt 17989409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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