View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_low_30 (Length: 280)
Name: NF6776_low_30
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 1200809 - 1200553
Alignment:
| Q |
5 |
agaaaccaatcacagtttttggcctcaaattttgttaggagtgggaaactaagcagaatagagctagggtatttgggtgagtcatttttaaagttgattc |
104 |
Q |
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| T |
1200809 |
agaaaccaatcacagtttttggcctcaaattttgttaggagtgggaaactaagcagaat-gagctagggtatttgggtgagtcatttttaaagttgattc |
1200711 |
T |
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| Q |
105 |
cacacaatttgagaagttttaggttttcgaaacaaaaagatttggcgggggtgggaacattatagagaggaattgaatgagtgaggatttccaattcttt |
204 |
Q |
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| T |
1200710 |
cacacaatttgagaagttttaggttttcgaaacaaaaagatttggcgggggtgggaacattatagagaggaattgaatgagtgaggatttccaattcttt |
1200611 |
T |
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| Q |
205 |
aattgtcatgggcatgatgggaactttgatagtggaaatcaaatcagtatgcaattct |
262 |
Q |
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| T |
1200610 |
aattgtcatgggcatgatgggaactttgatagtggaaatcaaatcagtatgcaattct |
1200553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 1203916 - 1203846
Alignment:
| Q |
144 |
atttggcgggggtgggaacattatagagaggaattgaatgagtgaggatttccaattctttaattgtcatg |
214 |
Q |
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| T |
1203916 |
atttggtgggagtgggaacatcatagagagaaatagaatgagtgaggaatttcaattctttaattgtcatg |
1203846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 1203957 - 1203911
Alignment:
| Q |
34 |
ttttgttaggagtgggaaactaagcagaatagagctagggtatttgg |
80 |
Q |
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| T |
1203957 |
ttttgttaggagtgggaaactaagcagaatagagccagggtatttgg |
1203911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 1214082 - 1214033
Alignment:
| Q |
91 |
tttaaagttgattccacacaatttgagaagttttaggttttcgaaacaaa |
140 |
Q |
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| T |
1214082 |
tttaaagtggattccacacaacttgagatgttttaggttttcaaaacaaa |
1214033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 580528 - 580484
Alignment:
| Q |
75 |
atttgggtgagtcatttttaaagttgattccacacaatttgagaa |
119 |
Q |
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| T |
580528 |
atttgggtgagtcggtgttaaagttgattccacacaagttgagaa |
580484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 580596 - 580552
Alignment:
| Q |
7 |
aaaccaatcacagtttttggcctcaaattttgttaggagtgggaa |
51 |
Q |
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| T |
580596 |
aaaccaagcgcagtttttagcctcaaattttgttaggagagggaa |
580552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 8192787 - 8192934
Alignment:
| Q |
7 |
aaaccaatcacagtttttggcctcaaattttgttaggagtgggaaactaagc---ag---aatagagctagggtatttgggtgagtcatttttaaagttg |
100 |
Q |
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| T |
8192787 |
aaaccaagcgcagtttttggtctcaaattttgttagaagtgggaa-ctaagcttaagtttaatatagttaggggatttgggcgagtgagtgttaaagaag |
8192885 |
T |
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| Q |
101 |
attccacacaatttgagaagttttaggttttcgaaacaaaaagatttgg |
149 |
Q |
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| T |
8192886 |
attccacacaacttgagaagttttaggttttgaaaacgaatagatttgg |
8192934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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