View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_low_31 (Length: 278)

Name: NF6776_low_31
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6776_low_31
NF6776_low_31
[»] chr2 (6 HSPs)
chr2 (2-260)||(14920213-14920468)
chr2 (77-259)||(36598130-36598312)
chr2 (2-75)||(36598077-36598150)
chr2 (180-255)||(7487895-7487970)
chr2 (180-255)||(21736370-21736445)
chr2 (180-255)||(35172403-35172478)
[»] chr8 (3 HSPs)
chr8 (77-260)||(42366281-42366464)
chr8 (2-75)||(42366444-42366517)
chr8 (180-255)||(43489150-43489225)
[»] chr7 (2 HSPs)
chr7 (180-255)||(33474765-33474840)
chr7 (191-255)||(12253167-12253231)
[»] chr4 (2 HSPs)
chr4 (180-255)||(42315143-42315218)
chr4 (180-255)||(56397687-56397762)
[»] chr1 (2 HSPs)
chr1 (180-260)||(39758210-39758290)
chr1 (180-260)||(39763564-39763644)
[»] chr3 (2 HSPs)
chr3 (180-255)||(85995-86070)
chr3 (180-254)||(23753827-23753901)
[»] chr5 (1 HSPs)
chr5 (190-260)||(378472-378542)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 14920213 - 14920468
Alignment:
Q  2 agcaagttgattgattataataatttgatatataattagacggataaattcagttaagaaaattgcaagttacaattaagaaaattgcaagttacacttg 101  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||  ||||||| ||||||||||||| ||     
T  14920213 agcaagttgattgattataataattggatatataattagacggataaattctgtaaagaaaattgcaagttacggttaagaagattgcaagttacagtta 14920312  T
Q  102 tgaagatttcaaggatcatgtttggcaaacaaaagaaataatatgcacttgtcatggcagaacataaaagagtctcgtagagtatcataaaatcgcaaga 201  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||  ||||||||||| |||||| |||||    
T  14920313 tgaagatttcaaggattatgtttggcaaacaaaagaaataatatgcacttgtcatgacagaacataaaagattcctgtagagtatcacaaaatctcaaga 14920412  T
Q  202 gtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatctattc 260  Q
    |||| |||| | ||| || || ||||||||||||| ||||| |||||||||||||||||    
T  14920413 gtttgtgtg-agttg-tagat-agtctattttaactaaaaagtctcacacaatctattc 14920468  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 259
Target Start/End: Original strand, 36598130 - 36598312
Alignment:
Q  77 ttaagaaaattgcaagttacacttgtgaagatttcaaggatcatgtttggcaaacaaaagaaataatatgcacttgtcatggcagaacataaaagagtct 176  Q
    ||||||||||||||||||||| || |||||||||| ||||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||||| | |    
T  36598130 ttaagaaaattgcaagttacagttatgaagatttcgaggattatgtttggcaaactaaagaaataatatgcacttgtcgtagcagaacataaaagattat 36598229  T
Q  177 cgtagagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatctatt 259  Q
     | ||||||||| |||||  ||||||||| ||||| ||||||  |||||| ||||||||  ||||| ||||||||||||||||    
T  36598230 gggagagtatcacaaaatttcaagagtttgtgtgagattgttggatgagtttattttaaataaaaagtctcacacaatctatt 36598312  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 36598077 - 36598150
Alignment:
Q  2 agcaagttgattgattataataatttgatatataattagacggataaattcagttaagaaaattgcaagttaca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  36598077 agcaagttgattgattataataatttgatatataattagacggataaattatgttaagaaaattgcaagttaca 36598150  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 7487895 - 7487970
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatc 255  Q
    ||||||| | |||||| ||||| ||| ||||||||||||  |||||| ||||||||| ||||| ||||||||||||    
T  7487895 agagtattacaaaatctcaagattttgtgtgaaattgttggatgagtttattttaactaaaaagtctcacacaatc 7487970  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 21736370 - 21736445
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatc 255  Q
    ||||||| | ||||||  |||||||| ||||| ||||||| |||||| ||||||||| ||||| ||||||||||||    
T  21736370 agagtattacaaaatctgaagagtttgtgtgagattgttagatgagtttattttaactaaaaagtctcacacaatc 21736445  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 35172403 - 35172478
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatc 255  Q
    ||||||| | |||||| ||||||||| ||||| ||||||  | |||| ||||||||| ||||| ||||||||||||    
T  35172403 agagtattacaaaatctcaagagtttgtgtgagattgttggaagagtgtattttaactaaaaagtctcacacaatc 35172478  T

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Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 77 - 260
Target Start/End: Complemental strand, 42366464 - 42366281
Alignment:
Q  77 ttaagaaaattgcaagttacacttgtgaagatttcaaggatcatgtttggcaaacaaaagaaataatatgcacttgtcatggcagaacataaaagagtct 176  Q
    |||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42366464 ttaagaaaattgcaagttacagctatgaagatttcaaggatcatgtttggcaaacaaaagaaataatatgcacttgtcatggcataacataaaagagtct 42366365  T
Q  177 cgtagagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatctattc 260  Q
    |||||||||||| |||||| ||||||||| ||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  42366364 cgtagagtatcacaaaatctcaagagtttgtgtgagattgttagatgagtctattttaactaaaaagtctcacacaatctattc 42366281  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 42366517 - 42366444
Alignment:
Q  2 agcaagttgattgattataataatttgatatataattagacggataaattcagttaagaaaattgcaagttaca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42366517 agcaagttgattgattataataatttgatatataattagacggataaattctgttaagaaaattgcaagttaca 42366444  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 43489225 - 43489150
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatc 255  Q
    ||||||| | |||||| ||||||||| ||||| ||||||| |||||| ||||||||| ||||| ||||||||||||    
T  43489225 agagtattacaaaatctcaagagtttgtgtgagattgttagatgagtgtattttaactaaaaagtctcacacaatc 43489150  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 33474840 - 33474765
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatc 255  Q
    ||||||| | |||||| ||||||||| ||||| ||||||  |||||| ||||||||| ||||| ||||||||||||    
T  33474840 agagtattacaaaatctcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatc 33474765  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 12253167 - 12253231
Alignment:
Q  191 aaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatc 255  Q
    ||||| ||||||||| ||||  ||||||  |||||| ||||||||| ||||| ||||||||||||    
T  12253167 aaatctcaagagtttgtgtgggattgttggatgagtgtattttaactaaaaagtctcacacaatc 12253231  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 42315218 - 42315143
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatc 255  Q
    ||||||| | |||||| ||||||||| ||||| ||||||  |||||| ||||||||| ||||| ||||||||||||    
T  42315218 agagtattacaaaatctcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatc 42315143  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 56397762 - 56397687
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatc 255  Q
    ||||||| | |||||| ||||||||| ||||| ||||||  |||||| ||||||||| ||||| ||||||||||||    
T  56397762 agagtattacaaaatctcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatc 56397687  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 39758290 - 39758210
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatctattc 260  Q
    ||||||||| | |||| ||||||||| ||||| ||||||  |||||| ||||| ||| ||||| |||||||||||| ||||    
T  39758290 agagtatcacacaatctcaagagtttgtgtgagattgttggatgagtgtatttcaactaaaaagtctcacacaatccattc 39758210  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 39763644 - 39763564
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatctattc 260  Q
    ||||||||| | |||| ||||||||| ||||| ||||||  |||||| ||||| ||| ||||| |||||||||||| ||||    
T  39763644 agagtatcacacaatctcaagagtttgtgtgagattgttggatgagtgtatttcaactaaaaagtctcacacaatccattc 39763564  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 86070 - 85995
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatc 255  Q
    ||||||| | ||||||  |||||||| ||||| ||||||  |||||| ||||||||| ||||| ||||||||||||    
T  86070 agagtattacaaaatcttaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatc 85995  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 23753901 - 23753827
Alignment:
Q  180 agagtatcataaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaat 254  Q
    ||||||| | ||||||  |||||||| ||||| ||||||  |||||| ||||||||| ||||| |||||||||||    
T  23753901 agagtattacaaaatctaaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaat 23753827  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 378542 - 378472
Alignment:
Q  190 aaaatcgcaagagtttatgtgaaattgttaaatgagtctattttaacaaaaaactctcacacaatctattc 260  Q
    |||||| ||||||||||||||| ||||||  |||||| ||||| ||| ||||| | |||||||||| ||||    
T  378542 aaaatctcaagagtttatgtgagattgttggatgagtatatttcaactaaaaagtttcacacaatccattc 378472  T

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