View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_low_39 (Length: 241)

Name: NF6776_low_39
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6776_low_39
NF6776_low_39
[»] chr6 (8 HSPs)
chr6 (17-241)||(2226272-2226496)
chr6 (31-241)||(7990399-7990611)
chr6 (80-230)||(12181342-12181492)
chr6 (110-229)||(12648717-12648836)
chr6 (121-229)||(30620777-30620885)
chr6 (103-241)||(23302735-23302870)
chr6 (85-223)||(25558530-25558668)
chr6 (77-126)||(25338480-25338529)
[»] chr1 (16 HSPs)
chr1 (38-228)||(44196128-44196318)
chr1 (40-241)||(29639880-29640082)
chr1 (48-241)||(49868185-49868377)
chr1 (78-235)||(14201530-14201687)
chr1 (103-241)||(6078635-6078773)
chr1 (105-241)||(52754567-52754702)
chr1 (104-241)||(32380357-32380494)
chr1 (103-223)||(34000394-34000514)
chr1 (76-222)||(48607442-48607588)
chr1 (144-241)||(30559814-30559911)
chr1 (103-223)||(24903577-24903697)
chr1 (105-241)||(30054186-30054322)
chr1 (105-241)||(49465916-49466051)
chr1 (85-241)||(31637431-31637587)
chr1 (76-115)||(52754703-52754742)
chr1 (139-177)||(9636377-9636415)
[»] chr3 (26 HSPs)
chr3 (33-241)||(33776491-33776699)
chr3 (42-241)||(16415767-16415966)
chr3 (42-241)||(18516741-18516940)
chr3 (39-241)||(53682068-53682277)
chr3 (49-239)||(30381777-30381967)
chr3 (40-241)||(47041113-47041325)
chr3 (43-241)||(46279380-46279578)
chr3 (103-241)||(46986586-46986725)
chr3 (103-241)||(20844469-20844611)
chr3 (106-241)||(15667244-15667379)
chr3 (106-241)||(24130697-24130832)
chr3 (76-223)||(50091250-50091397)
chr3 (85-150)||(24989360-24989425)
chr3 (103-149)||(16312058-16312104)
chr3 (103-149)||(18488842-18488888)
chr3 (103-149)||(18493052-18493098)
chr3 (89-135)||(19152220-19152266)
chr3 (108-197)||(3345096-3345185)
chr3 (41-114)||(16311985-16312058)
chr3 (41-114)||(18488769-18488842)
chr3 (41-114)||(18492979-18493052)
chr3 (78-162)||(9740813-9740896)
chr3 (195-241)||(9740911-9740957)
chr3 (130-230)||(55194286-55194386)
chr3 (194-241)||(47472699-47472746)
chr3 (102-168)||(51261242-51261308)
[»] chr4 (16 HSPs)
chr4 (38-241)||(47299780-47299983)
chr4 (80-228)||(21402882-21403030)
chr4 (102-238)||(45586557-45586690)
chr4 (77-224)||(24105234-24105381)
chr4 (76-230)||(31943420-31943573)
chr4 (76-230)||(9578145-9578299)
chr4 (103-241)||(10985218-10985356)
chr4 (85-223)||(12827111-12827249)
chr4 (85-223)||(24974604-24974742)
chr4 (103-223)||(3650690-3650810)
chr4 (103-223)||(50632959-50633079)
chr4 (76-229)||(3073947-3074100)
chr4 (105-241)||(53693591-53693724)
chr4 (104-241)||(56039789-56039925)
chr4 (109-223)||(54085565-54085679)
chr4 (89-170)||(29528739-29528820)
[»] chr5 (19 HSPs)
chr5 (103-241)||(19576310-19576448)
chr5 (103-241)||(8911493-8911631)
chr5 (38-241)||(39021610-39021822)
chr5 (109-241)||(3052640-3052771)
chr5 (85-223)||(31649152-31649290)
chr5 (103-223)||(12448083-12448203)
chr5 (85-223)||(1705030-1705166)
chr5 (75-182)||(8784981-8785088)
chr5 (122-241)||(15731407-15731526)
chr5 (85-219)||(36704829-36704963)
chr5 (76-169)||(12098123-12098216)
chr5 (103-223)||(13760182-13760302)
chr5 (194-241)||(23244962-23245009)
chr5 (103-223)||(6451829-6451948)
chr5 (103-221)||(27169624-27169733)
chr5 (103-148)||(4785055-4785100)
chr5 (198-241)||(4785131-4785174)
chr5 (99-145)||(8110815-8110861)
chr5 (172-241)||(40813129-40813199)
[»] chr7 (18 HSPs)
chr7 (38-241)||(38762007-38762210)
chr7 (103-241)||(38761606-38761744)
chr7 (103-241)||(29953018-29953156)
chr7 (109-229)||(9225769-9225889)
chr7 (105-229)||(43727257-43727381)
chr7 (105-241)||(6113227-6113361)
chr7 (105-229)||(26787041-26787165)
chr7 (76-241)||(25252936-25253099)
chr7 (136-241)||(31035983-31036090)
chr7 (85-223)||(20965783-20965921)
chr7 (103-222)||(43216948-43217067)
chr7 (103-239)||(24276801-24276937)
chr7 (104-241)||(28041934-28042070)
chr7 (111-222)||(23181463-23181573)
chr7 (85-222)||(3118129-3118266)
chr7 (175-235)||(23804907-23804967)
chr7 (111-199)||(47729802-47729890)
chr7 (172-240)||(5286888-5286954)
[»] chr8 (14 HSPs)
chr8 (103-241)||(41504685-41504823)
chr8 (33-241)||(10869661-10869869)
chr8 (103-241)||(8882567-8882705)
chr8 (88-218)||(9255628-9255758)
chr8 (76-241)||(24592464-24592629)
chr8 (85-223)||(16594652-16594790)
chr8 (106-241)||(28841217-28841352)
chr8 (103-223)||(6623574-6623694)
chr8 (103-223)||(30731855-30731975)
chr8 (85-208)||(13153203-13153325)
chr8 (133-241)||(22729328-22729436)
chr8 (103-223)||(10614262-10614381)
chr8 (192-241)||(14446199-14446248)
chr8 (77-169)||(24332073-24332165)
[»] chr2 (7 HSPs)
chr2 (103-241)||(31410474-31410612)
chr2 (88-241)||(31708901-31709053)
chr2 (106-241)||(27925780-27925914)
chr2 (106-230)||(30546932-30547055)
chr2 (78-219)||(34318582-34318724)
chr2 (103-223)||(31162169-31162289)
chr2 (197-239)||(28840442-28840484)
[»] scaffold0726 (1 HSPs)
scaffold0726 (85-182)||(446-543)
[»] scaffold0470 (1 HSPs)
scaffold0470 (103-223)||(12998-13118)
[»] scaffold0178 (1 HSPs)
scaffold0178 (110-230)||(16980-17100)
[»] scaffold0002 (2 HSPs)
scaffold0002 (198-241)||(435755-435798)
scaffold0002 (85-169)||(435881-435965)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 2226272 - 2226496
Alignment:
Q  17 caccttgctcctaaagcaggcgcgattttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttga 116  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||||| |||| |    | |||||||||||||||||| ||||||||||||||||||||    
T  2226272 caccttgctcccaaagcaagggcgattttaccccccagctagcccgggcacgcgcttgggttcaacctatactttctttgtatcgctacaagaaatttga 2226371  T
Q  117 cttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccaccttta 216  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |   ||||||||||||||||    
T  2226372 cttttagtgacggccaaaatccgtcactatagtgcaaatttccgtagctaaatctgtctgtcattgccaagtgattgtcgccatatgttttccaccttta 2226471  T
Q  217 cctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||||| ||||||||||    
T  2226472 cctacggaaaaaactgtaggtaatt 2226496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 7990611 - 7990399
Alignment:
Q  31 agcaggcgcgattttacccccc-agctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacgg 129  Q
    |||||| ||||||||||||||| ||||| |||||||| || ||   |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  7990611 agcaggggcgattttacccccccagctaacccgggtatgcgcccgggctcaacccatactttctttgtatcgctataagaaatttgacttttagtgacgg 7990512  T
Q  130 ccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaa-aaa 228  Q
    |||||||||||||||| ||| ||||||||||||||||||||  |||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||    
T  7990511 ccaaaatccgtcactacaggacaaatttccgtagctaaatctatctgtcattgccaaatgactgccactgcatgttttccacatttacctacggaaaaaa 7990412  T
Q  229 accgtaggtaatt 241  Q
    |||||||||||||    
T  7990411 accgtaggtaatt 7990399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 12181492 - 12181342
Alignment:
Q  80 aacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtca 179  Q
    |||| ||||||||||| |||||||||||||||||| |||| |||||||  | ||||||||||||| ||||  ||||||||||||||||||| ||||||||    
T  12181492 aaccgatactttctttgtatcgctacaagaaatttaacttgtagtgacaacaaaaatccgtcactctaggataaatttccgtagctaaatccgtctgtca 12181393  T
Q  180 ttgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaac 230  Q
    ||| ||| ||  |||| |||||| ||||||||||||||||||||| |||||    
T  12181392 ttgtcaaatggatgtcgctgcatattttccacctttacctacggacaaaac 12181342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 12648717 - 12648836
Alignment:
Q  110 aatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttcc 209  Q
    |||||||||| ||||||| |||||||||||| || ||||| |||||||||||||||||||  ||||||||||||||| ||  ||||||||||||||||||    
T  12648717 aatttgacttgtagtgacagccaaaatccgttaccataggacaaatttccgtagctaaatatgtctgtcattgccaaatgtttgtcactgcatgttttcc 12648816  T
Q  210 acctttacctacggaaaaaa 229  Q
    || |||||||||||| ||||    
T  12648817 acgtttacctacggacaaaa 12648836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 30620777 - 30620885
Alignment:
Q  121 tagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttaccta 220  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| || ||  ||||||| |||||||||||| ||||||||    
T  30620777 tagtgacaaccaaaatccgtcactatagggcaaatttctgtagctaaatctgtctgtcgttgctaaatggatgtcactacatgttttccacatttaccta 30620876  T
Q  221 cggaaaaaa 229  Q
     | ||||||    
T  30620877 tgcaaaaaa 30620885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 23302735 - 23302870
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    |||| ||||||||||||||||||| |||||||||| |||| ||  ||| ||||||| ||||||||||  || |||||| || || |||||||||||||||    
T  23302735 tacacgaaatttgacttttagtgatggccaaaatctgtcatta--gggtaaatttctgtagctaaatttgtttgtcat-gcaaaatgactgtcactgcat 23302831  T
Q  203 gttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
     ||||||| |||||||||| |||||||| || |||||||    
T  23302832 attttccatctttacctacagaaaaaacggtgggtaatt 23302870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 25558668 - 25558530
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    ||||||||||| ||||||||||| |||||||| |||| || |||||||||||| |||| ||||||  ||| ||  |||||||||||  ||||||| |  |    
T  25558668 atactttctttgtatcgctacaacaaatttgaatttttgtaacggccaaaatctgtcaatataggaaaaaattatgtagctaaatccatctgtcaatatc 25558569  T
Q  185 aagtgactgtcactgcatgttttccacctttacctacgg 223  Q
    || || |||||||  ||| |||||||| |||||||||||    
T  25558568 aaatggctgtcacgacatattttccacttttacctacgg 25558530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 25338480 - 25338529
Alignment:
Q  77 ctcaacctatactttctttctatcgctacaagaaatttgacttttagtga 126  Q
    ||||||| ||||||||||| |||| |||||||||||||||||| ||||||    
T  25338480 ctcaacccatactttctttgtatcactacaagaaatttgacttgtagtga 25338529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 44196128 - 44196318
Alignment:
Q  38 gcgattttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatc 137  Q
    |||||||||||||| |||||| ||||| |||| ||   |||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||    
T  44196128 gcgattttaccccctagctagtccgggcacgcgcccgggctcaacccatactttctttgtatcgttacaagaaatttgacttttagtgacagccaaaatc 44196227  T
Q  138 cgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaa 228  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  44196228 cgtcactatagggcaaatttccgtagctaaatctgtctgtcattgtcaaatgattgtcactgcatgttttccacctttacctacggaaaaa 44196318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 29640082 - 29639880
Alignment:
Q  40 gattttaccccccagctagccc-gggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatcc 138  Q
    ||||||||||| |||||||||| ||| |||| ||   |||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||||||    
T  29640082 gattttaccccacagctagccccgggcacgcgcccgggctcaacccatactttctttgtatcgctacaaaaaatttaacttttagtgacggccaaaatcc 29639983  T
Q  139 gtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggta 238  Q
    ||||||||||  ||||||| |||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  29639982 gtcactatagaacaaattttcgtagctaaatctgtctgtcattgccaaatgaccgtcactgcaagttttccacctttacctacggaaaaaaccgtaggta 29639883  T
Q  239 att 241  Q
    |||    
T  29639882 att 29639880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 49868377 - 49868185
Alignment:
Q  48 cccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactata 147  Q
    ||||||||||||||||| |||| ||   |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49868377 cccccagctagcccgggcacgcgcccgggctcaacccatactttctttgtatcgctacaagaaatttgacttttagtgacggcaaaaatccgtcactata 49868278  T
Q  148 gggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
     |||||||||  ||||||||||| ||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||    
T  49868277 -ggcaaatttatgtagctaaatctgtctgtcattgccaaatgtctatcactgcaagttttccacctttacctacggaaaaaaccgtaggtaatt 49868185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 14201687 - 14201530
Alignment:
Q  78 tcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgt 177  Q
    |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||    
T  14201687 tcaacccatactttctttgtattgctacaagaaatttgacttttagtgacggccaaaatccatcactatagggcaaatttccgtagataaatccgtatgt 14201588  T
Q  178 cattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtag 235  Q
    ||||| ||| || |||||||| |||||||||||||||||||| |||||||||||||||    
T  14201587 cattgtcaaatggctgtcactacatgttttccacctttacctgcggaaaaaaccgtag 14201530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 6078773 - 6078635
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||     
T  6078773 tacaagaaatttgatttttagtgacggccaaaatctgtcactatagggcaaatttccgtagctaaatctgtctgtcattgtcaaatgactgtcactgcaa 6078674  T
Q  203 gttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||||| ||  ||||||||||||||||||||    
T  6078673 gttttccacctttatcttaggaaaaaaccgtaggtaatt 6078635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 52754702 - 52754567
Alignment:
Q  105 caagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgt 204  Q
    ||||||||||||||| ||||||  |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||    
T  52754702 caagaaatttgacttatagtgatagccagaatccgtcactatagggcaaatttctgtagctaaatctgtctgtcattgccaattgactgtcactacatgt 52754603  T
Q  205 tttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  52754602 tttccacatttacctacggaaaaaa-cgtaggtaatt 52754567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 32380494 - 32380357
Alignment:
Q  104 acaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatg 203  Q
    |||||||| ||||||||||||||| |||||| | |||||||||| | |||||||| ||||||||||  ||||||||||||||| ||   |||||| ||||    
T  32380494 acaagaaaattgacttttagtgacagccaaatttcgtcactatatgacaaatttctgtagctaaatttgtctgtcattgccaaatggtcgtcactacatg 32380395  T
Q  204 ttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  32380394 ttttccacctttacctacggacaaaactgtaggtaatt 32380357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 34000394 - 34000514
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||||||||| ||||||  |||  |  ||||||||||| ||||||||||||||| |||||||||| ||||    
T  34000394 tacaacaaatttgattttttgtgacggccaaaatccgtcattataggaaaaacatttgtagctaaatccgtctgtcattgccaaatgactgtcacggcat 34000493  T
Q  203 gttttccacctttacctacgg 223  Q
    |||||||| ||||||| ||||    
T  34000494 gttttccagctttaccaacgg 34000514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 48607588 - 48607442
Alignment:
Q  76 gctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtct 175  Q
    |||||||| ||||||||||| ||| ||||||| ||||||||||| |||| || |||||||||||||||||||||  ||| || ||||||||||||   ||    
T  48607588 gctcaacccatactttctttgtatggctacaataaatttgacttgtagtaacagccaaaatccgtcactataggaaaaaatttcgtagctaaatctaact 48607489  T
Q  176 gtcattgccaagtgactgtcactgcatgttttccacctttacctacg 222  Q
     |||||| ||| ||   ||||||||||| ||| ||| ||||||||||    
T  48607488 atcattgtcaaatggtcgtcactgcatgcttttcacatttacctacg 48607442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 30559911 - 30559814
Alignment:
Q  144 tatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||||| |||||||||||| || | |||||| ||| || |||||| |||||||||||||||||||||||  || |||||| |||||||||    
T  30559911 tatagggcaaattttcgtagctaaatccgtatatcattgtcaaatggctgtcattgcatgttttccacctttacctatcgacaaaaccataggtaatt 30559814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 24903577 - 24903697
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||||| ||| ||||||  ||||||  |||| |||||| |||| ||| |||||| || || ||||  |||    
T  24903577 tacaacaaatttgaatttttgtgacggccaaaatccatcaatataggaaaaatttatgtagttaaatccgtctctcaatgccaaatggctttcacgacat 24903676  T
Q  203 gttttccacctttacctacgg 223  Q
    |||||||||||||||||||||    
T  24903677 gttttccacctttacctacgg 24903697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 30054186 - 30054322
Alignment:
Q  105 caagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgt 204  Q
    ||||||||||||||| |||| ||| |||||||  |||||||| | | |||||||||||| |||||| |||||| |||| ||| || ||| | |||| |||    
T  30054186 caagaaatttgacttgtagttacgaccaaaatttgtcactatggagtaaatttccgtagttaaatctgtctgtgattgtcaaatggctgacgctgcgtgt 30054285  T
Q  205 tttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    | ||||| |||| ||||||| |||||| |||||||||    
T  30054286 tgtccacttttatctacggacaaaaccataggtaatt 30054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 49466051 - 49465916
Alignment:
Q  105 caagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgt 204  Q
    ||||||||||||||| |||||||  ||||||| | |||||||| || |||||| ||| ||||| |  || |||||||| ||| || |||||||| |||||    
T  49466051 caagaaatttgacttatagtgacaaccaaaattcatcactataaggaaaattttcgtcgctaattttgtttgtcattgtcaaatggctgtcactacatgt 49465952  T
Q  205 tttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||| ||||||||  ||||||| |||||||||||    
T  49465951 tttccacatttaccta-tgaaaaaaacgtaggtaatt 49465916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 31637431 - 31637587
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    |||| |||||| |||| |||||| || |||||||| ||||||||||||||||| |||| |||||  |||| ||  |||| |||||| |||| ||||||      
T  31637431 atacgttctttgtatcactacaaaaattttgacttgtagtgacggccaaaatctgtcattatagaacaaaattttgtagttaaatctgtctatcattgtt 31637530  T
Q  185 aagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    || ||  ||||||  ||||||||||| ||||| ||||  | ||||||||||||||||    
T  31637531 aaatggttgtcacaacatgttttccatctttaactacaaacaaaaccgtaggtaatt 31637587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 52754742 - 52754703
Alignment:
Q  76 gctcaacctatactttctttctatcgctacaagaaatttg 115  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  52754742 gctcaaccgatactttctttgtatcgctacaagaaatttg 52754703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 9636377 - 9636415
Alignment:
Q  139 gtcactatagggcaaatttccgtagctaaatcggtctgt 177  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  9636377 gtcactataggggaaatttccgtagctaaatctgtctgt 9636415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 33776491 - 33776699
Alignment:
Q  33 caggcgcgattttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggcca 132  Q
    |||| ||||||||||| |||||||||  |||| |||| |    | |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33776491 caggggcgattttacctcccagctagttcgggcacgcgctcgggttcaacccatactttctttgtatcgctacaagaaatttgacttttagtgacggcca 33776590  T
Q  133 aaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccg 232  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||     
T  33776591 aaatccgtcactgtagggaaaatttccgtagctaaatctgtctgtcattgccaaatgactgtcaccgtatgttttccacctttacctacggaaaaaacca 33776690  T
Q  233 taggtaatt 241  Q
    |||||||||    
T  33776691 taggtaatt 33776699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 16415767 - 16415966
Alignment:
Q  42 ttttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtc 141  Q
    ||||||||||||||||||||||| |||| ||  ||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  16415767 ttttaccccccagctagcccgggcacgcgcccgagctcaacccatactttctttgtatctctacaagaaatttgacttttagtgacggccaaaatccgtc 16415866  T
Q  142 actatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||||| |||||| ||||| |||||| ||||||||||||||| ||||||||| || ||||||||||||||| ||||| ||||||| | |||||||||    
T  16415867 actatagggaaaattttcgtaggtaaatctgtctgtcattgccaaatgactgtcagtgtatgttttccaccttttcctacagaaaaaatcataggtaatt 16415966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 18516741 - 18516940
Alignment:
Q  42 ttttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtc 141  Q
    ||||||||||||||||||||||| |||| ||  ||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  18516741 ttttaccccccagctagcccgggcacgcgcccgagctcaacccatactttctttgtatctctacaagaaatttgacttttagtgacggccaaaatccgtc 18516840  T
Q  142 actatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||||| |||||| ||||| |||||| ||||||||||||||| ||||||||| || ||||||||||||||| ||||| ||||||| | |||||||||    
T  18516841 actatagggaaaattttcgtaggtaaatctgtctgtcattgccaaatgactgtcagtgtatgttttccaccttttcctacagaaaaaatcataggtaatt 18516940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 53682068 - 53682277
Alignment:
Q  39 cgattttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctat-------cgctacaagaaatttgacttttagtgacggcc 131  Q
    ||||||||||| |||||||||||||| |||| |    |||||||| ||||||||||| |||       |||||||||||||||||||||||||||| |||    
T  53682068 cgattttaccctccagctagcccgggcacgcgcttgggctcaacccatactttctttgtattttgtatcgctacaagaaatttgacttttagtgacagcc 53682167  T
Q  132 aaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaacc 231  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  53682168 aaaatccgtcactatagggcaaatttccgtagctaaatctgtttgtcattgccaaatgactgtcactgcaagttttccacctttacctatggaaaaaacc 53682267  T
Q  232 gtaggtaatt 241  Q
    ||||||||||    
T  53682268 gtaggtaatt 53682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 30381777 - 30381967
Alignment:
Q  49 ccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatag 148  Q
    |||||||||||||||| |||||||   |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  30381777 ccccagctagcccgggcacgcacccgggctcaacccatactttctttatatcgctacaagaaatttgacttttagtgacagccaaaattcgtcactatag 30381876  T
Q  149 ggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaa 239  Q
    || |||||||||||| |||||| |||||||||||| || ||| ||||||| || ||||||||||||||| |||||||||||||||||||||    
T  30381877 ggtaaatttccgtagttaaatctgtctgtcattgctaaatgattgtcactacaagttttccacctttacatacggaaaaaaccgtaggtaa 30381967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 47041113 - 47041325
Alignment:
Q  40 gattttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaattt-----------gacttttagtgacg 128  Q
    ||||||||||||||||||||||||| |||  ||   ||||||||  |||||||||| ||||||||||||||||||           ||||||||||||||    
T  47041113 gattttaccccccagctagcccgggcacgtgcccgggctcaacccctactttctttgtatcgctacaagaaatttacaacaaattagacttttagtgacg 47041212  T
Q  129 gccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaa 228  Q
    |||||||||||||||||||||||||| ||| || |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  47041213 gccaaaatccgtcactatagggcaaacttcagtcgctaaatctgtctgtcatagccaaatgactgtcactgcatgttttccacctttacctacggaaaaa 47041312  T
Q  229 accgtaggtaatt 241  Q
    |||||||||||||    
T  47041313 accgtaggtaatt 47041325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 43 - 241
Target Start/End: Complemental strand, 46279578 - 46279380
Alignment:
Q  43 tttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtca 142  Q
    |||||| ||||||||||| ||| |||| ||   |||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||| |||||    
T  46279578 tttaccacccagctagcctgggcacgcgcctgggctcaacccatactttctttgcatcgctacaagaaatttgacttttagttacggccaaaattcgtca 46279479  T
Q  143 ctatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||||||| ||||||||||| |||| |||||||||| |   | | | |||||||||||||||||||||||||||||||| |||||||||||    
T  46279478 ctatagggcaaatttctgtagctaaatccgtctttcattgccaaatagttattattgcatgttttccacctttacctacggaaaaaatcgtaggtaatt 46279380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 46986586 - 46986725
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| || |||||||||||||||    
T  46986586 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggaaaatttccgtagctaaatctgtttgtcattgctaaatgactgtcactgcat 46986685  T
Q  203 gttttccacctttacctacgg-aaaaaaccgtaggtaatt 241  Q
    |||||||| |||||||||||| |||||| |||||||||||    
T  46986686 gttttccatctttacctacggaaaaaaatcgtaggtaatt 46986725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 20844469 - 20844611
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactata----gggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcact 198  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    |||||||||||||||| |||||  ||||||||||| ||| ||||||||| |    
T  20844469 tacaagaaatttgtcttttagtgacggctaaagtccgtcactatatgtagggcaaatttccgtagttaaatttgtctgtcattgtcaaatgactgtcatt 20844568  T
Q  199 gcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  20844569 gcatgttttccacctttacctatggaaaaaaccgtaggtaatt 20844611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 15667244 - 15667379
Alignment:
Q  106 aagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgtt 205  Q
    |||||| |||||||||||||||| ||||||||| ||||||||||| |||||| | ||||||||||  |||||||||| ||| ||  |||| | |||||||    
T  15667244 aagaaaattgacttttagtgacgaccaaaatccatcactatagggaaaattttcatagctaaatccatctgtcattgtcaaatggttgtcgcggcatgtt 15667343  T
Q  206 ttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    || |||||||||||||||| |||| |||||||||||    
T  15667344 ttgcacctttacctacggacaaaatcgtaggtaatt 15667379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 24130832 - 24130697
Alignment:
Q  106 aagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgtt 205  Q
    |||||||||||||||||||||| |||||| ||||| | || |||| |||||| ||||| |||||  ||||||| ||| ||| ||  ||||| ||||||||    
T  24130832 aagaaatttgacttttagtgacagccaaattccgttaatacagggaaaattttcgtagataaatttgtctgtctttgacaaatggttgtcattgcatgtt 24130733  T
Q  206 ttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24130732 ttccacctttacctacggacaaaaccgtaggtaatt 24130697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 223
Target Start/End: Original strand, 50091250 - 50091397
Alignment:
Q  76 gctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtct 175  Q
    |||||| | ||| ||||||| |||||||||| ||| |||||||| || | || |||||||||||||| |||||||||||||| ||||| |||||  ||      
T  50091250 gctcaatcaatattttctttgtatcgctacaggaattttgacttataataacagccaaaatccgtcaatatagggcaaattttcgtaggtaaatatgtac 50091349  T
Q  176 gtcattgccaagtgactgtcactgcatgttttccacctttacctacgg 223  Q
    ||||||||||| ||||||||||| |||||||| ||| |||||||||||    
T  50091350 gtcattgccaaatgactgtcactacatgtttttcacatttacctacgg 50091397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 24989425 - 24989360
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactataggg 150  Q
    ||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||| | |||||||    
T  24989425 atactttctttgtatcactacaagaaatttaacttttactgacggccaaaatccgttaatataggg 24989360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 16312058 - 16312104
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagg 149  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  16312058 tacaagaaatttgacttttagtgacgaccaaaatccgtctctatagg 16312104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 18488842 - 18488888
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagg 149  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  18488842 tacaagaaatttgacttttagtgacgaccaaaatccgtctctatagg 18488888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 18493052 - 18493098
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagg 149  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  18493052 tacaagaaatttgacttttagtgacgaccaaaatccgtctctatagg 18493098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 19152220 - 19152266
Alignment:
Q  89 tttctttctatcgctacaagaaatttgacttttagtgacggccaaaa 135  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  19152220 tttctttgtatcgctacaagaaatttaacttttagtgacggccaaaa 19152266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 3345096 - 3345185
Alignment:
Q  108 gaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcac 197  Q
    |||||||||||| ||||||| ||  |||||||||||||||| |  ||||||||||||||| || |||||||| || ||| || |||||||    
T  3345096 gaaatttgacttgtagtgacagctgaaatccgtcactatagagttaatttccgtagctaattccgtctgtcaatgtcaaatggctgtcac 3345185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 16311985 - 16312058
Alignment:
Q  41 attttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaattt 114  Q
    |||| |||||||||||| || ||| |||| ||  ||||||||| ||||||||||| ||||||||||||||||||    
T  16311985 atttgaccccccagctatcctgggcacgcgcccgagctcaacccatactttctttgtatcgctacaagaaattt 16312058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 18488769 - 18488842
Alignment:
Q  41 attttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaattt 114  Q
    |||| |||||||||||| || ||| |||| ||  ||||||||| ||||||||||| ||||||||||||||||||    
T  18488769 atttgaccccccagctatcctgggcacgcgcccgagctcaacccatactttctttgtatcgctacaagaaattt 18488842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 18492979 - 18493052
Alignment:
Q  41 attttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaattt 114  Q
    |||| |||||||||||| || ||| |||| ||  ||||||||| ||||||||||| ||||||||||||||||||    
T  18492979 atttgaccccccagctatcctgggcacgcgcccgagctcaacccatactttctttgtatcgctacaagaaattt 18493052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 9740813 - 9740896
Alignment:
Q  78 tcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgta 162  Q
    |||||| ||||||| |||||||| ||||||||||||||| || || |||||||||||||| || ||||   ||||||||||||||    
T  9740813 tcaaccgatacttt-tttctatcactacaagaaatttgatttataatgacggccaaaatctgttactaagaggcaaatttccgta 9740896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 9740911 - 9740957
Alignment:
Q  195 cactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  9740911 cactgcatgttttccacttttacctaaggacaaaaccgtaggtaatt 9740957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 55194286 - 55194386
Alignment:
Q  130 ccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaa 229  Q
    ||||||||| ||| ||||  ||||||||| | ||||||||  ||||||||||| ||| ||  || |||  |||||||||||| |||||||||||| ||||    
T  55194286 ccaaaatccatcattataaagcaaatttctgcagctaaattcgtctgtcattgtcaaatggttgccaccacatgttttccacttttacctacggacaaaa 55194385  T
Q  230 c 230  Q
    |    
T  55194386 c 55194386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 47472699 - 47472746
Alignment:
Q  194 tcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||| ||||||||| |||||||||||||||  |||||||||||||||    
T  47472699 tcactccatgttttctacctttacctacggactaaaccgtaggtaatt 47472746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 51261242 - 51261308
Alignment:
Q  102 ctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaa 168  Q
    ||||| |||||||||||| ||||||| ||| |||||| ||||||||||   |||||| |||||||||    
T  51261242 ctacacgaaatttgacttgtagtgacagccgaaatccatcactataggattaatttcagtagctaaa 51261308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 38 - 241
Target Start/End: Original strand, 47299780 - 47299983
Alignment:
Q  38 gcgattttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatc 137  Q
    ||||||||||||||||||||||||||| ||||  |  ||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||  |||||||    
T  47299780 gcgattttaccccccagctagcccgggcacgcgtccgagctcaacccatactttctttgtattgctacaagaaatttgacttttaatgacgagcaaaatc 47299879  T
Q  138 cgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggt 237  Q
    | |||||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||||| | |||||    
T  47299880 catcactatagggcaaattttcgtagctaaatctgtctgttattgccaaatgactgtcactacatattttccacctttacctacggaaaaaatcctaggt 47299979  T
Q  238 aatt 241  Q
    ||||    
T  47299980 aatt 47299983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 80 - 228
Target Start/End: Original strand, 21402882 - 21403030
Alignment:
Q  80 aacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtca 179  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||| ||||||||    
T  21402882 aacccatactttctttgtatcgctaaaagaaatttgacttttagtgacggccaaaatccgtcactataggacaaatttttatagctaaatccgtctgtca 21402981  T
Q  180 ttgccaagtgactgtcactgcatgttttccacctttacctacggaaaaa 228  Q
    ||| ||| || ||||||| |||||||||||||||||||||| |||||||    
T  21402982 ttgtcaaatggctgtcaccgcatgttttccacctttacctatggaaaaa 21403030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 45586690 - 45586557
Alignment:
Q  102 ctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgca 201  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||  ||||||||||   |  ||||||||||||||    
T  45586690 ctacaagaaatttgatttttagtgacagccaaaatctgtcactatagggcaaatttctgtagctaaatatgtctgtcatt---agatgactgtcactgca 45586594  T
Q  202 tgttttccacctttacctacggaaaaaaccgtaggta 238  Q
    |||||||||||||||||||||||||||||||||||||    
T  45586593 tgttttccacctttacctacggaaaaaaccgtaggta 45586557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 77 - 224
Target Start/End: Complemental strand, 24105381 - 24105234
Alignment:
Q  77 ctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctg 176  Q
    ||||||| ||||||||||| |||||||||||||||||||| || ||||||| ||| | || ||||||||||||||||||||||||||||||||| ||||     
T  24105381 ctcaacccatactttctttgtatcgctacaagaaatttgatttgtagtgacagccgatatacgtcactatagggcaaatttccgtagctaaatccgtctc 24105282  T
Q  177 tcattgccaagtgactgtcactgcatgttttccacctttacctacgga 224  Q
    |||||||||| |   ||||||| |||||||||||| ||||||||||||    
T  24105281 tcattgccaaattgttgtcactacatgttttccacttttacctacgga 24105234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 31943420 - 31943573
Alignment:
Q  76 gctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtct 175  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||| | ||||||| |||||||||||  || |    
T  31943420 gctcaaccgatattttctttgtatcgctacaagaaatttgacttgtagtgacagccaatatccgtcactataagacaaattttcgtagctaaatttgtat 31943519  T
Q  176 gtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaac 230  Q
    ||||||||||| ||||||||||  |||||||||| |||||||||||||| |||||    
T  31943520 gtcattgccaaatgactgtcac-ccatgttttcctcctttacctacggacaaaac 31943573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 9578145 - 9578299
Alignment:
Q  76 gctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtct 175  Q
    ||||||||| || ||||||| ||||||||||||||||||||||| ||||||| | |||||||||||| ||||| |||||||||||||||||||||  | |    
T  9578145 gctcaacctttattttctttgtatcgctacaagaaatttgacttatagtgacagtcaaaatccgtcattatagagcaaatttccgtagctaaatctattt 9578244  T
Q  176 gtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaac 230  Q
    ||||||  ||| ||  ||||| ||||||||||||| ||||||||||||| |||||    
T  9578245 gtcattctcaaatggttgtcattgcatgttttccagctttacctacggacaaaac 9578299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 10985356 - 10985218
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||||||  |||||  || |||||||  ||| ||  ||||| |||||    
T  10985356 tacaagaaatttgacttttagtgatagccaaaatccgtcgctatagggaaaatttccgtaattaaatatgtatgtcattctcaaatggttgtcagtgcat 10985257  T
Q  203 gttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||||| |||||||||| | |||||| || ||||||    
T  10985256 gttttccacttttacctacgaacaaaaccataagtaatt 10985218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 12827111 - 12827249
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    ||||||||||| ||||||||||| |||||||| |||| |||||||||||||||||||| ||||||  ||| ||  |||||||||||  ||||| | || |    
T  12827111 atactttctttgtatcgctacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaaattatgtagctaaatccatctgttagtgtc 12827210  T
Q  185 aagtgactgtcactgcatgttttccacctttacctacgg 223  Q
    || ||  ||||||  ||||||||||||||||||||||||    
T  12827211 aaatggttgtcacgacatgttttccacctttacctacgg 12827249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 24974742 - 24974604
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    ||||||||||| ||||||||||| |||||||| |||| |||||||| ||||||||||| ||||||  ||| ||  || ||||||||  ||||||| || |    
T  24974742 atactttctttgtatcgctacaacaaatttgaatttttgtgacggctaaaatccgtcaatataggaaaaaattatgttgctaaatccatctgtcagtgtc 24974643  T
Q  185 aagtgactgtcactgcatgttttccacctttacctacgg 223  Q
    || || |||||||  ||||||||||||||||||||||||    
T  24974642 aaatggctgtcacgacatgttttccacctttacctacgg 24974604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 3650690 - 3650810
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||||||||| ||||||  ||||||  ||||||||||  |||||||  |||||| || |||||||  |||    
T  3650690 tacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaatttatgtagctaaattcgtctgtcgatgccaaatggctgtcacgacat 3650789  T
Q  203 gttttccacctttacctacgg 223  Q
    |||||||||||||||||||||    
T  3650790 gttttccacctttacctacgg 3650810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 50633079 - 50632959
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||||||||| ||||||  ||||||  ||||||||||  |||||||| |||||| |  |||||||  |||    
T  50633079 tacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaatttatgtagctaaattcgtctgtcagtgccaaatagctgtcacgacat 50632980  T
Q  203 gttttccacctttacctacgg 223  Q
    |||||||||||||||||||||    
T  50632979 gttttccacctttacctacgg 50632959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 229
Target Start/End: Original strand, 3073947 - 3074100
Alignment:
Q  76 gctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggc-aaatttccgtagctaaatcggtc 174  Q
    |||||||| ||||||| ||| |||||||||||||||||||| || ||||||  |||||||||  |||||||||||| |||||| |||||||||||  |||    
T  3073947 gctcaaccaatactttttttgtatcgctacaagaaatttgatttatagtgatagccaaaatctatcactatagggcaaaattttcgtagctaaatttgtc 3074046  T
Q  175 tgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaa 229  Q
    | |||||| ||| ||| ||||||| ||||||||| || || || || ||||||||    
T  3074047 t-tcattgtcaaatgattgtcactacatgttttctacattcacatatggaaaaaa 3074100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 53693724 - 53693591
Alignment:
Q  105 caagaaatttgacttttagtgacggccaaaa-tccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatg 203  Q
    ||||||||||||||| |||||||  |||||| || ||||||||||| |||||||||||||||||||| ||||||||||   || || ||||||   ||||    
T  53693724 caagaaatttgacttatagtgacaaccaaaaatctgtcactataggacaaatttccgtagctaaatctgtctgtcatttttaaatggctgtca---catg 53693628  T
Q  204 ttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||| |||| |||||||| |||||||| |||||||||||    
T  53693627 tttaccacatttacctatggaaaaaa-cgtaggtaatt 53693591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 56039925 - 56039789
Alignment:
Q  104 acaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatg 203  Q
    ||||||||||| | || || |||  ||| |||||||||| |||||||  |||||||||||||||||| || ||||| || ||| ||  |||||||  |||    
T  56039925 acaagaaattttatttgtaatgatagccgaaatccgtcattatagggttaatttccgtagctaaatccgtttgtca-tgtcaaatggttgtcactctatg 56039827  T
Q  204 ttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||| || ||||||||| ||| ||||||||||||||||    
T  56039826 ttttacatctttacctatggacaaaaccgtaggtaatt 56039789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 54085565 - 54085679
Alignment:
Q  109 aaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttc 208  Q
    |||||| ||||||| |||| | |||||| | ||||||| |   ||| || |||| ||||||| ||||||||||| ||| || |||||||  |||||||||    
T  54085565 aaatttcacttttactgacagtcaaaattcatcactatggtaaaaaatttcgtaactaaatccgtctgtcattgtcaaatggctgtcacaacatgttttc 54085664  T
Q  209 cacctttacctacgg 223  Q
    |||||||||||||||    
T  54085665 cacctttacctacgg 54085679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 29528820 - 29528739
Alignment:
Q  89 tttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatc 170  Q
    ||||||| |||| || |||||||||||| || |||||||  || ||||| || |||||||||  ||||||||||||| ||||    
T  29528820 tttctttatatcacttcaagaaatttgatttgtagtgaccaccgaaatctgttactatagggttaatttccgtagctgaatc 29528739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 19576310 - 19576448
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| |||||    
T  19576310 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggaaaatttccgtagctaaatctgtctgtcattgccaaatgactgtcattgcat 19576409  T
Q  203 gttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19576410 gttttccacctttacctacggaaaaaaccgtaggtaatt 19576448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 8911493 - 8911631
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||||||||||| |||||||||||||||    
T  8911493 tacaagaaatttgacttttagtgacggccaaaattcgtcactatagggcaaatttccgtagctaaatttgtttgtcattgccaaatgactgtcactgcat 8911592  T
Q  203 gttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  8911593 gttttccacctttacctacgaaaaaaaccgtaggtaatt 8911631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 38 - 241
Target Start/End: Complemental strand, 39021822 - 39021610
Alignment:
Q  38 gcgattttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaattt----------gacttttagtgac 127  Q
    ||||||||||||||||||||||||||| |||| |||  | |||||| ||||||||||| |||   | ||||||||||          |||||||||| ||    
T  39021822 gcgattttaccccccagctagcccgggcacgcgccggggttcaacccatactttctttgtatttttgcaagaaatttacaagaaattgacttttagtaac 39021723  T
Q  128 ggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaa 227  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |||| ||||| |||| ||||||| ||||| ||||||||||    
T  39021722 ggccaaaatccatcactatagggcaaatttccgtagctaaatctgtctgtcattaccaaatgaccgtcaccgcat-ttttccagctttaactacggaaaa 39021624  T
Q  228 aaccgtaggtaatt 241  Q
    ||||||||||||||    
T  39021623 aaccgtaggtaatt 39021610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 3052640 - 3052771
Alignment:
Q  109 aaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttc 208  Q
    ||||||||||| ||||||| | |||||||||||| ||||||| |||||| |||||||||||| ||||||||||| ||| |  |||||||  |||||||||    
T  3052640 aaatttgacttatagtgacagtcaaaatccgtcattatagggaaaattttcgtagctaaatctgtctgtcattgtcaaatagctgtcaccacatgttttc 3052739  T
Q  209 cacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||| ||||||||||||||||| |||||||||||    
T  3052740 cacatttacctacggaaaaaa-cgtaggtaatt 3052771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 31649290 - 31649152
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    ||||||||||| ||||||||||| |||||||| |||| |||||||||||||||||||| ||||||  ||| ||  || ||||||||  ||||||| || |    
T  31649290 atactttctttgtatcgctacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaaattatgttgctaaatccatctgtcagtgtc 31649191  T
Q  185 aagtgactgtcactgcatgttttccacctttacctacgg 223  Q
    || || |||||||  ||||||||||||||||||||||||    
T  31649190 aaatggctgtcacgacatgttttccacctttacctacgg 31649152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 12448083 - 12448203
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||||| ||| ||||||  ||||||  ||||||||||   ||||||| |||||| || |||||||  |||    
T  12448083 tacaacaaatttgaatttttgtgacggccaaaatccatcaatataggaaaaatttatgtagctaaattcatctgtcagtgccaaatggctgtcacgacat 12448182  T
Q  203 gttttccacctttacctacgg 223  Q
    |||||||||||||||||||||    
T  12448183 gttttccacctttacctacgg 12448203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 1705166 - 1705030
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    ||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||||| |||||   ||||||  ||||||||||  |||  ||||||||    
T  1705166 atactttctttgtatcgctacaagaaatttgaatttttgtgtcggccaaaatccgtcaatatagaaaaaatttatgtagctaaattcgtc--tcattgcc 1705069  T
Q  185 aagtgactgtcactgcatgttttccacctttacctacgg 223  Q
    || || || ||||   |||||||| ||||||||||||||    
T  1705068 aaatggctatcacaatatgttttctacctttacctacgg 1705030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 8784981 - 8785088
Alignment:
Q  75 agctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtc 174  Q
    ||||||||||||||||||||| ||| | ||||||||||||||||| |||||||   ||||||||||||||||  |  || ||||||||||| |||| |||    
T  8784981 agctcaacctatactttctttttattgttacaagaaatttgacttatagtgacaatcaaaatccgtcactatgtgaaaattttccgtagcttaatctgtc 8785080  T
Q  175 tgtcattg 182  Q
    ||||||||    
T  8785081 tgtcattg 8785088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 15731526 - 15731407
Alignment:
Q  122 agtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctac 221  Q
    |||||| |||||||| ||||||| ||||  |||||||||||||||||||  ||| || ||| ||||||  ||||||||||||||||||||||||| ||||    
T  15731526 agtgacagccaaaattcgtcactgtaggaaaaatttccgtagctaaatccatctatcgttgtcaagtggttgtcactgcatgttttccacctttaactac 15731427  T
Q  222 ggaaaaaaccgtaggtaatt 241  Q
    |||  ||||| | |||||||    
T  15731426 ggacgaaaccattggtaatt 15731407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 36704963 - 36704829
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    ||||||||||| ||||||||||| |||||||| ||||  ||||||||||||||||||| ||||||  ||| ||  |||||||||||  | ||||| || |    
T  36704963 atactttctttgtatcgctacaataaatttgaattttgctgacggccaaaatccgtcaatataggaaaaaattatgtagctaaatccttatgtcagtgtc 36704864  T
Q  185 aagtgactgtcactgcatgttttccacctttacct 219  Q
    || || |||||||  ||||||||| ||||||||||    
T  36704863 aaatggctgtcacgacatgttttctacctttacct 36704829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 12098216 - 12098123
Alignment:
Q  76 gctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaat 169  Q
    |||||||| |||||||||||  ||| |||||||||| ||||||| || |||  |||||||||||||||||||||| ||| || |||||||||||    
T  12098216 gctcaacccatactttcttttaatcactacaagaaaattgacttgtaatgatagccaaaatccgtcactatagggtaaactttcgtagctaaat 12098123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 13760302 - 13760182
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||||||||| ||||||  ||||||  ||||||||||| |  ||| | |||||| || |||||||  ||     
T  13760302 tacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaatttatgtagctaaatccgcatgttagtgccaaatggctgtcacaacaa 13760203  T
Q  203 gttttccacctttacctacgg 223  Q
     ||||||||||||||||||||    
T  13760202 attttccacctttacctacgg 13760182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 23245009 - 23244962
Alignment:
Q  194 tcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23245009 tcactgcatgttttccacctttacctacggacaaaaccgtaggtaatt 23244962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 6451948 - 6451829
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||||||||| |||| |  ||||||  ||||||||||  || | ||| || ||| || |||||||  |||    
T  6451948 tacaacaaatttgaatttttgtgacggccaaaatccgtcaatataagaaaaatttatgtagctaaattcgtttatcagtgtcaaatg-ctgtcacgacat 6451850  T
Q  203 gttttccacctttacctacgg 223  Q
    |||||||||||||||||||||    
T  6451849 gttttccacctttacctacgg 6451829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 27169733 - 27169624
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||||||||||||||| |||||||||||||||||         |||| |||||| ||||| |||||  || |||||||| ||| ||  |||||||||||    
T  27169733 tacaagaaatttgacttatagtgacggccaaaatc---------agggaaaattttcgtagttaaattcgtttgtcattgtcaaatggttgtcactgcat 27169643  T
Q  203 gttttccacctttacctac 221  Q
    ||||||||| |||||||||    
T  27169642 gttttccacttttacctac 27169624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 4785055 - 4785100
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatag 148  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||    
T  4785055 tacaaaaaatttgatttttagtgacggccaaaatccgtcactatag 4785100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 4785131 - 4785174
Alignment:
Q  198 tgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||    
T  4785131 tgcatgtttttcacctttacatacggaaaaaaccgtaagtaatt 4785174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 8110815 - 8110861
Alignment:
Q  99 tcgctacaagaaatttgacttttagtgacggccaaaatccgtcacta 145  Q
    ||||||||||||| ||||||| ||||||||| ||||| |||||||||    
T  8110815 tcgctacaagaaacttgacttgtagtgacgggcaaaaaccgtcacta 8110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 40813129 - 40813199
Alignment:
Q  172 gtctgtcattgccaagtgactgtcactgcatgtttt-ccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||| || ||  ||||||||| |||||| |||||||||||| |||| |||| |||||||||||    
T  40813129 gtctgtcattgctaaatggttgtcactgcgtgtttttccacctttacctgcggacaaaatcgtaggtaatt 40813199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 241
Target Start/End: Original strand, 38762007 - 38762210
Alignment:
Q  38 gcgattttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatc 137  Q
    |||||||||||||||||||| |||||| |||  |    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38762007 gcgattttaccccccagctaacccgggcacgtgctcgggctcaacccatactttctttgtatcgctacaagaaatttgacttttagtgacggccaaaatc 38762106  T
Q  138 cgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggt 237  Q
     | |||| ||| |||||||| |||||||||||| |||||||||||  || |||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  38762107 agccactgtagagcaaattttcgtagctaaatctgtctgtcattgttaaatgactgtcaccgcaagttttccacctttacctacggaaaaaactgtaggt 38762206  T
Q  238 aatt 241  Q
    ||||    
T  38762207 aatt 38762210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 38761606 - 38761744
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| || ||| ||||||||||     
T  38761606 tacaagaaatttgacttttagtgacggccaaaatccgtcactataggacaaatttccgtagctaaatctgtctatcattgctaaatgagtgtcactgcaa 38761705  T
Q  203 gttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||||| ||||||||||||||||||  |||||||||    
T  38761706 gttttccacttttacctacggaaaaaactataggtaatt 38761744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 29953156 - 29953018
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    |||| |||||||||||||| |||||| ||||||||| |||||||||| ||||||||| ||| |||||| | |||||||| | || ||||||||||  |||    
T  29953156 tacacgaaatttgactttttgtgacgaccaaaatccatcactataggacaaatttccatagttaaatctggctgtcatttcaaaatgactgtcacgacat 29953057  T
Q  203 gttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  29953056 gttttccacctttacctacggaaaaaatcgtaggtaatt 29953018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 9225769 - 9225889
Alignment:
Q  109 aaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttc 208  Q
    ||||||||||| ||||||| |||||||||||||||| | |||||||||| ||||| ||||||  |||||||||||||| || |||||||| |||||||||    
T  9225769 aaatttgacttgtagtgacagccaaaatccgtcactttggggcaaattttcgtagttaaatctatctgtcattgccaaatggctgtcactacatgttttc 9225868  T
Q  209 cacctttacctacggaaaaaa 229  Q
    ||| |||||||| ||||||||    
T  9225869 cacatttacctatggaaaaaa 9225889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 43727257 - 43727381
Alignment:
Q  105 caagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgt 204  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||   ||||| || |||||||| ||| || |||||||| |||||    
T  43727257 caagaaatttgacttatagtaacagccaaaatccgtcactatagggcaaatttccgtattcaaatctgtttgtcattgtcaaatggctgtcactacatgt 43727356  T
Q  205 tttccacctttacctacggaaaaaa 229  Q
    || |||| |||||||||||||||||    
T  43727357 ttcccacatttacctacggaaaaaa 43727381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 6113227 - 6113361
Alignment:
Q  105 caagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtg-actgtcactgcatg 203  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||||||| || |||||  ||||| ||   ||||||||||||    
T  6113227 caagaaatttgacttgtagtgatagccaaaatccgtcactatagggtaaatttccgtagctaaatccgtatgtca--gccaaatgtgttgtcactgcatg 6113324  T
Q  204 ttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||||||||| || |||| |||||||||||    
T  6113325 ttttccacctttacctacagacaaaa-cgtaggtaatt 6113361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 26787165 - 26787041
Alignment:
Q  105 caagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgt 204  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||| ||  ||||| | |||||    
T  26787165 caagaaatttgacttatagagacagccaaaatccgtcactatagggcaaatttccatagctaaatttgtctgtcattgccaaatggttgtcattacatgt 26787066  T
Q  205 tttccacctttacctacggaaaaaa 229  Q
    ||| ||  ||||| |||||||||||    
T  26787065 ttttcatatttacatacggaaaaaa 26787041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 241
Target Start/End: Original strand, 25252936 - 25253099
Alignment:
Q  76 gctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtct 175  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||| ||||||  ||||||||  |||  |||| ||  ||||||||||||||||||  |||    
T  25252936 gctcaaccgatactttctttgtattgctacaagaaatttgacttgtagtgaaagccaaaatttgtcgttatatggttaatttccgtagctaaatccttct 25253035  T
Q  176 gtcattgccaagtg-actgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||  ||||| ||   ||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  25253036 gtca--gccaaatgtgttgtcactgcatgttttccacctttacctacggacaaaa-cgtaggtaatt 25253099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 31036090 - 31035983
Alignment:
Q  136 tccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacgg--aaaaaaccgt 233  Q
    ||||||||||||||| |||||||||||| |||||  ||||||||||| ||| ||||||||||| || ||||||||||||||||||| |  ||||||||||    
T  31036090 tccgtcactatagggaaaatttccgtagttaaatatgtctgtcattgtcaaatgactgtcactacaagttttccacctttacctaccgaaaaaaaaccgt 31035991  T
Q  234 aggtaatt 241  Q
    ||||||||    
T  31035990 aggtaatt 31035983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 20965783 - 20965921
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    ||||||||||| ||||||||||| |||||||| |||| |||||||| ||||||||||| ||||||  ||| ||  || ||||||||  ||||||| || |    
T  20965783 atactttctttgtatcgctacaacaaatttgaatttttgtgacggctaaaatccgtcaatataggaaaaaattatgttgctaaatccatctgtcagtgtc 20965882  T
Q  185 aagtgactgtcactgcatgttttccacctttacctacgg 223  Q
    || || |||||||  ||||||||||||||||||||||||    
T  20965883 aaatggctgtcacgacatgttttccacctttacctacgg 20965921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 43217067 - 43216948
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| ||||| || ||||||||||| ||||||  ||||||  ||||||||||| |||||||| |||||| || |||||||  |||    
T  43217067 tacaacaaatttgaatttttgtgacagctaaaatccgtcaatataggaaaaatttatgtagctaaatccgtctgtcagtgccaaatggctgtcacgacat 43216968  T
Q  203 gttttccacctttacctacg 222  Q
    ||||||||||||||||||||    
T  43216967 gttttccacctttacctacg 43216948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 24276937 - 24276801
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| ||| |||| |||||||||  |||||||||| ||||||||||| ||||||||||||| |||||  |||||||||| ||| || || |||||  ||    
T  24276937 tacaaaaaaattgaattttagtgatagccaaaatccttcactatagggaaaatttccgtagcgaaatccatctgtcattgtcaaatggctatcactaaat 24276838  T
Q  203 gttttccacctttacctacggaaaaaaccgtaggtaa 239  Q
    ||||| || |||||| ||| || ||||||||||||||    
T  24276837 gtttttcatctttacttacagacaaaaccgtaggtaa 24276801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 28042070 - 28041934
Alignment:
Q  104 acaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatg 203  Q
    |||| ||||||||||| ||| ||||||| ||||||  |||||||| |  |||  |||||| ||||||  |||||||||| ||| || |||||| ||||||    
T  28042070 acaaaaaatttgacttgtagcgacggccgaaatccaacactatagagttaatagccgtagttaaatccttctgtcattgtcaaatggctgtcaatgcatg 28041971  T
Q  204 ttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||| |||||||||| || || ||||||||||||||||    
T  28041970 tttttcacctttacc-acagacaaaaccgtaggtaatt 28041934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 23181573 - 23181463
Alignment:
Q  111 atttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttcca 210  Q
    ||||||||| |||| | ||||||||||||| |||||||| ||||||| ||||| |||||  ||||||||||| ||| ||  |||||||||| ||||| ||    
T  23181573 atttgacttatagt-atggccaaaatccgttactataggccaaattttcgtagttaaatatgtctgtcattgtcaaatggttgtcactgcacgtttttca 23181475  T
Q  211 cctttacctacg 222  Q
    | ||||||||||    
T  23181474 cttttacctacg 23181463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 3118266 - 3118129
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    ||||||||||| |||| |||||| |||||| | |||| |||||||| |||||| || | |||||   ||||||  |||| |||||| |||||||| || |    
T  3118266 atactttctttgtatcactacaacaaattttaatttttgtgacggctaaaatctgtaaatatagaaaaaatttatgtagataaatccgtctgtcagtgtc 3118167  T
Q  185 aagtgactgtcactgcatgttttccacctttacctacg 222  Q
    || ||  ||||||  |||||||||||||||||||||||    
T  3118166 aaatggttgtcacgacatgttttccacctttacctacg 3118129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 23804967 - 23804907
Alignment:
Q  175 tgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtag 235  Q
    |||||||| ||| || ||||||| |||||||||||||||||||||||||| ||||||||||    
T  23804967 tgtcattgtcaaatggctgtcaccgcatgttttccacctttacctacggacaaaaccgtag 23804907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 47729802 - 47729890
Alignment:
Q  111 atttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactg 199  Q
    ||||||||| ||||||||| ||| ||| ||||||||||||||||||| | |||||||||  || |||| ||||||| ||| ||||||||    
T  47729802 atttgacttgtagtgacggtcaagatctgtcactatagggcaaattttcatagctaaattcgtttgtcgttgccaaatgattgtcactg 47729890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 5286888 - 5286954
Alignment:
Q  172 gtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaat 240  Q
    |||| |||||| ||| |||||||||||  |||||| ||||||||||||| || ||||||||||||||||    
T  5286888 gtctatcattgtcaaatgactgtcactatatgttt-ccacctttacctatgg-aaaaaccgtaggtaat 5286954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 41504685 - 41504823
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||   |||||||||||||    
T  41504685 tacaagaaatttgacttttagtgacggccaaaatccatcactatagggcaaatttccgtagctaaatctgtctgtcatggccaaaacactgtcactgcat 41504784  T
Q  203 gttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41504785 gttttccacctttacctacggaaaaaaccgtaggtaatt 41504823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 10869661 - 10869869
Alignment:
Q  33 caggcgcgattttaccccccagctagcccgggtacgcaccgaagctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggcca 132  Q
    |||| ||||||||||||||||||||||  ||| |||| |    |||||||| ||||||||||| ||||  |||||||||||| ||||||||||| |||||    
T  10869661 caggggcgattttaccccccagctagcttgggcacgcgctcgggctcaacccatactttctttgtatcattacaagaaatttaacttttagtgatggcca 10869760  T
Q  133 aaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccg 232  Q
    |||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||| | |||||| ||||| ||||||||| |||||||||||||||||||     
T  10869761 aaattcgttactatagggcaaatttccgtagctacatctgtctgtcattgccaaataactgtcgctgcaagttttccacttttacctacggaaaaaacca 10869860  T
Q  233 taggtaatt 241  Q
    |||||||||    
T  10869861 taggtaatt 10869869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 8882705 - 8882567
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||| |||| |||||| ||| ||||||||||||||     
T  8882705 tacaagaaatttgacttttagtgacggccaaaatccgtcactataggaaaaatttccttagctaaatctgtctatcattgacaaatgactgtcactgcaa 8882606  T
Q  203 gttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8882605 gttttccacctttacctacggaaaaaaccgtaggtaatt 8882567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 9255628 - 9255758
Alignment:
Q  88 ctttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaag 187  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  || |||| |||||||     
T  9255628 ctttctttgtatcgctacaagaaatttgacttatagtgacagccaaaatccgtcactatagggcaaatttccgtagctaaatttgtatgtcgttgccaaa 9255727  T
Q  188 tgactgtcactgcatgttttccacctttacc 218  Q
    || |||||||| |||||||| ||| ||||||    
T  9255728 tggctgtcactacatgttttacacatttacc 9255758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 241
Target Start/End: Complemental strand, 24592629 - 24592464
Alignment:
Q  76 gctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtct 175  Q
    |||||| | ||||||||||| ||||  ||||||||||||||||| | ||||| ||  ||||||||||||||||||  ||||| |||||||| |||  | |    
T  24592629 gctcaatccatactttctttgtatcagtacaagaaatttgacttatggtgacagctgaaatccgtcactatagggttaattttcgtagctacatctatat 24592530  T
Q  176 gtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    ||||||| ||| ||  ||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  24592529 gtcattgtcaaatggttgtcactgcatgttttccatctttacctagggacaaaaccgtaggtaatt 24592464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 16594652 - 16594790
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    ||||||||||| ||||||||||| |||||||| |||| |||||||||||||||||||| ||||||  ||| ||  |||||||||||  ||||||| || |    
T  16594652 atactttctttgtatcgctacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaaattatgtagctaaatccatctgtcagtgtc 16594751  T
Q  185 aagtgactgtcactgcatgttttccacctttacctacgg 223  Q
    || || |||||||  ||||||||||||||||||||||||    
T  16594752 aaatggctgtcacgacatgttttccacctttacctacgg 16594790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 28841217 - 28841352
Alignment:
Q  106 aagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgtt 205  Q
    ||||||||||| |||||||||   || |||||||||||||||| |  |||||||||||||||||| || |||||||| ||| || ||||||| |||| ||    
T  28841217 aagaaatttgaattttagtgataaccgaaatccgtcactatagagttaatttccgtagctaaatccgtatgtcattgtcaaatggctgtcacggcatatt 28841316  T
Q  206 ttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    || |||||||||||||||| |||| |||||||||||    
T  28841317 tttcacctttacctacggacaaaatcgtaggtaatt 28841352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 6623574 - 6623694
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||||||||| ||||||  ||||||  ||||||||||  |||||||| |||||| || |||||||  |||    
T  6623574 tacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaatttatgtagctaaattcgtctgtcagtgccaaatggctgtcacgacat 6623673  T
Q  203 gttttccacctttacctacgg 223  Q
    |||||||||||||||||||||    
T  6623674 gttttccacctttacctacgg 6623694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 30731975 - 30731855
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||||||||| ||||||  ||||||  ||||||||||  ||||||||||||||| || || ||||   ||    
T  30731975 tacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaatttatgtagctaaattcgtctgtcattgccaaatggctatcacgatat 30731876  T
Q  203 gttttccacctttacctacgg 223  Q
    |||||||||||||||||||||    
T  30731875 gttttccacctttacctacgg 30731855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 13153325 - 13153203
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgcc 184  Q
    ||||||||||| ||||| |||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||  ||||||||||  || ||||||||||    
T  13153325 atactttctttgtatcgttacaagaaatttaacttatagtgacagccaaaatccgtcactat-gggcaaatttatgtagctaaatttgtttgtcattgcc 13153227  T
Q  185 aagtgactgtcactgcatgttttc 208  Q
    || ||  ||||| | |||||||||    
T  13153226 aaatggttgtcattacatgttttc 13153203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 22729328 - 22729436
Alignment:
Q  133 aaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttccacctttacctacggaaaaaaccg 232  Q
    |||||||||||||| | |  |||||||||||||||||  || |||||||| ||| || ||||||| |||| ||||||||||||  ||| ||| |||| ||    
T  22729328 aaatccgtcactattgagttaatttccgtagctaaattcgtatgtcattgtcaaatggctgtcacggcatattttccacctttggctatggacaaaatcg 22729427  T
Q  233 taggtaatt 241  Q
    |||||||||    
T  22729428 taggtaatt 22729436  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 10614262 - 10614381
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| ||||||||| || ||  ||| ||||||  ||||||  |||||||||||  ||||||| ||||||||| ||||| | ||||    
T  10614262 tacaacaaatttgattttttgtgacggccgaa-tctatcattataggaaaaatttatgtagctaaatccttctgtcactgccaagtggctgtcgccgcat 10614360  T
Q  203 gttttccacctttacctacgg 223  Q
    |||||  | ||||||||||||    
T  10614361 gttttttagctttacctacgg 10614381  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 14446199 - 14446248
Alignment:
Q  192 tgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||| ||||||||||||||||||||||| || |||||| | |||||||    
T  14446199 tgtcaccgcatgttttccacctttacctacagacaaaaccattggtaatt 14446248  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 24332073 - 24332165
Alignment:
Q  77 ctcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaat 169  Q
    ||||||| ||||||| ||| ||||  |||| |||| ||||| | ||||||   ||||||||||||||||| | || ||||||| |||||||||    
T  24332073 ctcaacccatactttgtttgtatcaatacatgaaacttgacctgtagtgataaccaaaatccgtcactattgagctaatttccatagctaaat 24332165  T

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Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 31410612 - 31410474
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||| ||| ||||||||| |    
T  31410612 tacaagaaatttgaattttagtgacggccaaaatctgtcactatagggcaaatttccgtagctaaatctgt-tgttattgccaaatgattgtcactgctt 31410514  T
Q  203 gttttccacctttacctacgg-aaaaaaccgtaggtaatt 241  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  31410513 gttttccacctttacctacggaaaaaaaccgtaggtaatt 31410474  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 31709053 - 31708901
Alignment:
Q  88 ctttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaag 187  Q
    |||||||| |||||||||||||||||||| || |||||||  |||||||||||||||||||||||||||||||||||||||||  | |||||||||||||    
T  31709053 ctttctttgtatcgctacaagaaatttgatttgtagtgacaaccaaaatccgtcactatagggcaaatttccgtagctaaatccttatgtcattgccaag 31708954  T
Q  188 tgactgtcactgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
     |  |||||||||| ||||||||||||||||||  || |||| |||||||||||    
T  31708953 cggttgtcactgcaagttttccacctttacctagagacaaaa-cgtaggtaatt 31708901  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 27925914 - 27925780
Alignment:
Q  106 aagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgtt 205  Q
    |||||||||||||| |||| ||  |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||  |||||| |||||||    
T  27925914 aagaaatttgacttgtagtaacaaccaaaaaccgtcactatagggcaaatttccgtagctaaatccgtctgtcattgtcaaatggttgtcacggcatgtt 27925815  T
Q  206 ttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||||| |||||||||||| |||| |||||||||||    
T  27925814 ttccacatttacctacggacaaaa-cgtaggtaatt 27925780  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 30546932 - 30547055
Alignment:
Q  106 aagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgtt 205  Q
    |||||||||||||| || |||| ||||||||||||||||| |||||||||||  ||||||||||  |||||||||||| || ||  ||||||||||||||    
T  30546932 aagaaatttgacttgtaatgacagccaaaatccgtcacta-agggcaaatttatgtagctaaatttgtctgtcattgcgaaatggttgtcactgcatgtt 30547030  T
Q  206 ttccacctttacctacggaaaaaac 230  Q
    ||||||||||||||||||| |||||    
T  30547031 ttccacctttacctacggataaaac 30547055  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 34318724 - 34318582
Alignment:
Q  78 tcaacctatactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgt 177  Q
    |||||| ||||||||||| ||| |||| ||||||||||| || |||||||| ||||||||||| ||||||| | |||||||||||| ||||||  || ||    
T  34318724 tcaacccatactttctttgtattgctataagaaatttgatttgtagtgacgaccaaaatccgtgactatagagaaaatttccgtagttaaatccatcagt 34318625  T
Q  178 cattgccaagt-gactgtcactgcatgttttccacctttacct 219  Q
    ||||||||| | |  |||||  |||||||||||||||||||||    
T  34318624 cattgccaaatggtttgtcaaagcatgttttccacctttacct 34318582  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 31162289 - 31162169
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||||||||| ||||||  ||||||  ||||||||||| || ||||  |||||| |  |||||||  |||    
T  31162289 tacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaatttatgtagctaaatctgtttgtcggtgccaaatagctgtcacgacat 31162190  T
Q  203 gttttccacctttacctacgg 223  Q
    ||||||||||||||| |||||    
T  31162189 gttttccacctttacgtacgg 31162169  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 28840442 - 28840484
Alignment:
Q  197 ctgcatgttttccacctttacctacggaaaaaaccgtaggtaa 239  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  28840442 ctgcatgttttccacctttacctacggacaaaaccgtaggtaa 28840484  T

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Target: scaffold0726 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 446 - 543
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattg 182  Q
    ||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||| | ||||||| ||||||| ||||||||||   ||||||||||    
T  446 atactttctttgtatcactacaagaaatttaacttttactgacggccaaaatccgttaatatagggaaaatttctgtagctaaattcatctgtcattg 543  T

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Target: scaffold0470 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 12998 - 13118
Alignment:
Q  103 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcat 202  Q
    ||||| |||||||| |||| |||||||||||||| ||||| ||||||  ||||||  ||||||||||  |||||||| || ||| || |||||||  |||    
T  12998 tacaacaaatttgaatttttgtgacggccaaaatacgtcaatataggaaaaatttatgtagctaaattcgtctgtcagtgacaaatggctgtcacgacat 13097  T
Q  203 gttttccacctttacctacgg 223  Q
    |||||||||||||||||||||    
T  13098 gttttccacctttacctacgg 13118  T

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Target: scaffold0178 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 16980 - 17100
Alignment:
Q  110 aatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaatcggtctgtcattgccaagtgactgtcactgcatgttttcc 209  Q
    ||||||||||  ||||||  |||||||||||||||| ||| |||||||||||| ||||||  |  ||| ||| |||| ||  ||| | |||||||||||     
T  16980 aatttgacttacagtgacaaccaaaatccgtcactaaaggacaaatttccgtaactaaatttggttgtgattaccaaatggttgtaattgcatgttttct 17079  T
Q  210 acctttacctacggaaaaaac 230  Q
    ||||||| ||||||| |||||    
T  17080 acctttatctacggacaaaac 17100  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 435798 - 435755
Alignment:
Q  198 tgcatgttttccacctttacctacggaaaaaaccgtaggtaatt 241  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||    
T  435798 tgcacgttttccacctttacctacggacaaaactgtaggtaatt 435755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 435965 - 435881
Alignment:
Q  85 atactttctttctatcgctacaagaaatttgacttttagtgacggccaaaatccgtcactatagggcaaatttccgtagctaaat 169  Q
    ||||||||||| |||| ||| || ||||||||| | || ||||  ||||||||| |||||||||||  |||||  ||||||||||    
T  435965 atactttctttgtatcactataaaaaatttgacctgtaatgacaaccaaaatccatcactatagggttaatttttgtagctaaat 435881  T

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