View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_low_40 (Length: 238)
Name: NF6776_low_40
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 6255563 - 6255357
Alignment:
| Q |
1 |
cacaactttcaaattaaatattgtccacaccacaatctatgtctactaaaagaagtacatataatgggagagtaatgttccttttaacaagaagaaaatg |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6255563 |
cacaactttcaaattcaatattgtccacaccacaatctatgtctactaaaagaagtacatataatgggagaggaatgttccttttaacaagaagaaaatg |
6255464 |
T |
|
| Q |
101 |
tatgctccattcacgcagttcatgcttacatgagaacttacggagtcaatagctgtacggaaaggagaaccatcggtgacaagagtgtatataaaggttc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6255463 |
tatgctccattcacgcagttcatgctaacatgagaacttacggagtcaatagctgtacggaaaggagaaccatcagtgacaagagtgtatataaaggttc |
6255364 |
T |
|
| Q |
201 |
caagcat |
207 |
Q |
| |
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||||||| |
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| T |
6255363 |
caagcat |
6255357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 43430680 - 43430886
Alignment:
| Q |
1 |
cacaactttcaaattaaatattgtccacaccacaatctatgtctactaaaagaagtacatataatgggagagtaatgttccttttaacaagaagaaaatg |
100 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43430680 |
cacaactttcaaattcaatattgaccacaccacaatctatgtctactaaaagaagta--tataatgggagaggaatgttccttttaacaagaagaaaatg |
43430777 |
T |
|
| Q |
101 |
tatgctccattcacgcagttcatgcttacatgagaacttacggagtcaatag--ctgtacggaaaggagaaccatcggtgacaagagtgtatataaaggt |
198 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||| || || |
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| T |
43430778 |
tatgctccattcacgcagttcatgcttatatgagcacttacgaagtcaatagctctgtacggaaaggagaaccatcagtgacaagaatgtatattaaagt |
43430877 |
T |
|
| Q |
199 |
tccaagcat |
207 |
Q |
| |
|
||||||||| |
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| T |
43430878 |
tccaagcat |
43430886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 51208254 - 51208425
Alignment:
| Q |
1 |
cacaactttcaaattaaatattgtccacaccacaatctatgtctactaaaagaagtacatataatgggagagtaatgttccttttaacaagaagaaaatg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51208254 |
cacaactttcaaattcaatattgtccacaccacaatctatgtctactaaaagaagta--tataatgggagaggaatgttccttttaacaagaagaaaatg |
51208351 |
T |
|
| Q |
101 |
tatgctccattcacgcagttcatgcttacatgagaacttacggagtcaatagctgtacggaaaggagaaccatc |
174 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51208352 |
tatgctccattcacgcagttcatgcttatatgagcacttacggagtcaatagctgtacggaaaggagaaccatc |
51208425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 43956065 - 43955920
Alignment:
| Q |
64 |
atgggagagtaatgttccttttaacaagaagaaaatgtatgctccattcacgcagttcatgcttacatgagaacttacggagtcaatag--ctgtacgga |
161 |
Q |
| |
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||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
43956065 |
atgggagaggaatattccttttaacaagaagaaaatgtattctccatttacgcagttcatgcttatatgagcacttacggagtcaatagctctgtacgga |
43955966 |
T |
|
| Q |
162 |
aaggagaaccatcggtgacaagagtgtatataaaggttccaagcat |
207 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
43955965 |
aaggagaaccatcagtgacaagagtgtataccaaggttccaagcat |
43955920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 43962374 - 43962323
Alignment:
| Q |
156 |
tacggaaaggagaaccatcggtgacaagagtgtatataaaggttccaagcat |
207 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
43962374 |
tacggaaaggagaaccatcggtgacaagcgtgtaccctaaggttccaagcat |
43962323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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