View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_low_41 (Length: 238)
Name: NF6776_low_41
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_41 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 12544029 - 12543800
Alignment:
| Q |
9 |
atggacatcataagttgtaagtatagactcggaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatc |
108 |
Q |
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| T |
12544029 |
atggacatcataagttgtaagtatagactcggaagaattgggacgagattgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatc |
12543930 |
T |
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| Q |
109 |
aagtgtccgactgtcatacaatatcgacaacaatttgaaataatatgaccctttttcaaacaattatagcattcaacagtgaacaatcgaagaaagaatg |
208 |
Q |
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| T |
12543929 |
aagtgtccgactgtcatacaatatcgacaacaatttgaaataatatgaccctttttcaaacaattatagcattcagcagtgaacaatcgaagaaagaatg |
12543830 |
T |
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| Q |
209 |
cccaagctaacatcaatgacggcaaaattt |
238 |
Q |
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| T |
12543829 |
cccaagctaacaacaatgacggcaaaattt |
12543800 |
T |
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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 53018277 - 53018406
Alignment:
| Q |
57 |
ttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaaataatatga |
156 |
Q |
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| T |
53018277 |
ttgattccgattttgatcagaccgtggaggacgagtgagacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagtaatatga |
53018376 |
T |
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| Q |
157 |
ccctttttcaaacaattatagcattcaaca |
186 |
Q |
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| T |
53018377 |
ccctttttcatgcagttataacattcaaca |
53018406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 16501940 - 16501803
Alignment:
| Q |
48 |
gggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaa |
147 |
Q |
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| T |
16501940 |
gggacgaagttgattcctattttgatcaaatcgtggaggatgagtgggacaattttgaatcaaatgtttggctgtcttgcagtatcgacaacaatttgaa |
16501841 |
T |
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| Q |
148 |
ataatatgaccctttttcaaacaattatagcattcaac |
185 |
Q |
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| T |
16501840 |
gcaatatgaccctttttcaagcaattataacattcaac |
16501803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 23723542 - 23723477
Alignment:
| Q |
96 |
acaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaaataatatgaccctt |
161 |
Q |
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| T |
23723542 |
acaattttgaatcaagtgtccgactgtcttacaatattggcaacaatttgaagaaatatgaccctt |
23723477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 24432975 - 24433048
Alignment:
| Q |
40 |
gaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtg |
113 |
Q |
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| T |
24432975 |
gaagaattaggacgaggttgattcttgttctgattaggtcgtggaggacgagtggggcaattttgaatcaagtg |
24433048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 24431001 - 24430928
Alignment:
| Q |
40 |
gaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtg |
113 |
Q |
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| T |
24431001 |
gaagaattaggacgaggttgattcttgttctgattaggtcgtggaggaagagtggggcaattttgaatcaagtg |
24430928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 24658279 - 24658228
Alignment:
| Q |
96 |
acaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaa |
147 |
Q |
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| T |
24658279 |
acaattttgaatcaagtgcccaactgtcttacaatatcgacaacaatttgaa |
24658228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 17452024 - 17452097
Alignment:
| Q |
40 |
gaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtg |
113 |
Q |
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| T |
17452024 |
gaagaattaggacgaggttgattcttgttctgattaggtcgtggaggacgagtggggcaattttgaatcaagtg |
17452097 |
T |
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