View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_low_42 (Length: 235)
Name: NF6776_low_42
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 29802275 - 29802045
Alignment:
| Q |
5 |
acatcagccatccaatatccttcatgattaacacatttctccgcccagaaaacatgatcaacataacaccacaccgagaaattaaagtcctcagaaaagc |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29802275 |
acatcagccatccaatatccttcatgattaacacatttctccgcccagaaaacatgatcaacataacaccacaccgagaaattaaagtcctcagaaaggc |
29802176 |
T |
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| Q |
105 |
accacttacagaagttatattcctctaccatagctaattcaagctgaaagttgattctttatgcagctaacatctattgtatatatttgttttaacagaa |
204 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29802175 |
accacttacagaagttatagtcctctaccatagctaattcaagctgaaagttgattctttatgcagctaacatctattgtatatatttgttttaacagaa |
29802076 |
T |
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| Q |
205 |
atagatatggatgataaattttgcaagcaac |
235 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29802075 |
atagatatggatgataaattttgcaagcaac |
29802045 |
T |
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