View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_low_43 (Length: 232)

Name: NF6776_low_43
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6776_low_43
NF6776_low_43
[»] chr4 (3 HSPs)
chr4 (27-222)||(56171808-56172005)
chr4 (68-182)||(26742492-26742606)
chr4 (69-109)||(31381838-31381879)
[»] chr2 (8 HSPs)
chr2 (96-222)||(17792480-17792605)
chr2 (84-149)||(15261474-15261539)
chr2 (65-183)||(27095680-27095798)
chr2 (66-183)||(44942261-44942378)
chr2 (118-183)||(20607340-20607405)
chr2 (72-157)||(27665601-27665686)
chr2 (68-111)||(40039360-40039403)
chr2 (73-172)||(25067835-25067934)
[»] chr7 (10 HSPs)
chr7 (68-182)||(39990203-39990316)
chr7 (74-172)||(4028168-4028264)
chr7 (75-183)||(36579340-36579448)
chr7 (97-161)||(43256599-43256663)
chr7 (65-183)||(28664940-28665058)
chr7 (72-185)||(5237936-5238050)
chr7 (72-182)||(45457585-45457695)
chr7 (72-183)||(9785299-9785410)
chr7 (83-143)||(23303503-23303563)
chr7 (65-113)||(24988452-24988500)
[»] chr1 (6 HSPs)
chr1 (83-172)||(31609735-31609823)
chr1 (72-172)||(18889058-18889158)
chr1 (118-173)||(31427182-31427237)
chr1 (72-169)||(38783050-38783147)
chr1 (73-183)||(42490876-42490986)
chr1 (65-113)||(17347574-17347622)
[»] chr3 (11 HSPs)
chr3 (82-183)||(5327512-5327613)
chr3 (83-183)||(4219175-4219273)
chr3 (68-183)||(31270304-31270419)
chr3 (66-172)||(13702019-13702125)
chr3 (66-183)||(34960894-34961011)
chr3 (69-110)||(49552389-49552431)
chr3 (78-183)||(49628123-49628228)
chr3 (65-113)||(32080859-32080908)
chr3 (65-172)||(11819058-11819165)
chr3 (72-107)||(29503332-29503368)
chr3 (72-107)||(51202418-51202454)
[»] chr6 (4 HSPs)
chr6 (74-149)||(15175797-15175872)
chr6 (74-149)||(15470296-15470371)
chr6 (72-142)||(7870151-7870221)
chr6 (72-183)||(21507836-21507947)
[»] chr8 (6 HSPs)
chr8 (76-156)||(10952323-10952403)
chr8 (76-156)||(10960328-10960408)
chr8 (84-171)||(19384338-19384425)
chr8 (69-110)||(17949123-17949165)
chr8 (68-183)||(2968507-2968625)
chr8 (72-183)||(37612635-37612746)
[»] chr5 (6 HSPs)
chr5 (124-183)||(374317-374376)
chr5 (72-110)||(10649328-10649367)
chr5 (65-183)||(17331303-17331421)
chr5 (125-173)||(26612049-26612097)
chr5 (99-183)||(39179856-39179939)
chr5 (72-183)||(43493854-43493965)
[»] scaffold0238 (1 HSPs)
scaffold0238 (75-149)||(15739-15813)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 56171808 - 56172005
Alignment:
Q  27 caaatcctaactgttgcaacttttcttttccttgatccgtca--gatgggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttat 124  Q
    |||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  56171808 caaatcctaactgttgcaacttttcttttccttgatccatcaaagatgggtgattttgggtcaattttgacctgaaatcatccctccgaagtatttttat 56171907  T
Q  125 ttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttttttgtgttctcgtcatctcacatgactttgtttattctgat 222  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  56171908 ttctcttttagttaaataagtgattctcacatattttaagttttcttttgcttgttttttgtgttctcgtcatctcacatgactttgtttattttgat 56172005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 26742606 - 26742492
Alignment:
Q  68 agatgggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagtt 166  Q
    ||||||||||||| || |||||||||| ||  ||||||||| |||||| | ||||| ||||| | ||| || |||||| |||| |||||||||||  |||    
T  26742606 agatgggtgatttaggatcaattttgacccaaaaatcacccatccgaattgtttttctttctatcttaattgaataagtgatt-tcacatattttctgtt 26742508  T
Q  167 ttcttttgcttgtttt 182  Q
    |||||| | |||||||    
T  26742507 ttctttcgtttgtttt 26742492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 31381879 - 31381838
Alignment:
Q  69 gatgggtgattttgggtcaatt-ttgacctgaaatcacccct 109  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
T  31381879 gatgggtggttttgggtcaattcttgacctgaaatcacccct 31381838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 17792480 - 17792605
Alignment:
Q  96 ctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttttttgtgttctcgtc 195  Q
    ||||||||||||||||  | | ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||| | ||| |||||||| | |||||    
T  17792480 ctgaaatcacccctccatattgtttttctttctcttctagttaaataagcgattttcacatattttcagttttctttcgtttg-tttttgtgatttcgtc 17792578  T
Q  196 atctcacatgactttgtttattctgat 222  Q
    ||||  || ||||||||||||| ||||    
T  17792579 atctagcacgactttgtttattttgat 17792605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 15261539 - 15261474
Alignment:
Q  84 gtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgatt 149  Q
    ||||||||||||| |||||||||| |||||| | ||||| |||||||||||| |||||||| ||||    
T  15261539 gtcaattttgacccgaaatcacccttccgaattgtttttctttctcttttagctaaataagtgatt 15261474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 27095680 - 27095798
Alignment:
Q  65 gtcagatgggtgattttgggtcaattttgacct-gaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaa 163  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||||||  | |||||  |||| |  || || |||||| |||| |||||||||||      
T  27095680 gtcagatgggtgatttagggtcaattttgacctaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatt-tcacatatttttt 27095778  T
Q  164 gttttcttttgcttgttttt 183  Q
    ||||||||| | ||||||||    
T  27095779 gttttctttcgtttgttttt 27095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 44942261 - 44942378
Alignment:
Q  66 tcagatgggtgattttgggtcaattttgacctgaaa-tcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaag 164  Q
    |||||||||||||||  ||||||||||||||  ||| ||||||||||||  | |||||  |||| |  || || |||||| |||| |||||||||||| |    
T  44942261 tcagatgggtgatttatggtcaattttgacccaaaaatcacccctccgagttgttttttcttctatcctaattgaataagtgatt-tcacatattttatg 44942359  T
Q  165 ttttcttttgcttgttttt 183  Q
    |||||||||| ||||||||    
T  44942360 ttttcttttgtttgttttt 44942378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 20607405 - 20607340
Alignment:
Q  118 tttttatttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttttt 183  Q
    ||||| ||||| |||||||||| |||| |||| ||||||||||| |||||||||| | ||||||||    
T  20607405 tttttctttcttttttagttaactaagtgattttcacatattttcagttttctttcgtttgttttt 20607340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 27665601 - 27665686
Alignment:
Q  72 gggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacata 157  Q
    ||||||||| || | ||||||||||| ||||||||  | |||  | |||||||||||||||||||||||||||  ||| |||||||    
T  27665601 gggtgatttaggataaattttgacctaaaatcaccaattcgacttgtttttatttctcttttagttaaataagttattttcacata 27665686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 40039403 - 40039360
Alignment:
Q  68 agatgggtgattttgggtcaattttgacctgaaatcacccctcc 111  Q
    |||| |||||| | ||||||||||||||||||||||||||||||    
T  40039403 agatcggtgatgtagggtcaattttgacctgaaatcacccctcc 40039360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 25067835 - 25067934
Alignment:
Q  73 ggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttctt 171  Q
    |||||||| ||||||||||||| ||  |||||||||||||||  | |||||  |||| ||||| || |||||| |||| |||||||||||  ||||||||    
T  25067835 ggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctattttaattgaataagtgatt-tcacatattttctgttttctt 25067933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 39990316 - 39990203
Alignment:
Q  68 agatgggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttt 167  Q
    |||||| |||||| |||||||||||||| |||||||||| ||||||| | |||   |||||| |||||||||||| | |||| ||||||||||| |||||    
T  39990316 agatggatgatttagggtcaattttgacatgaaatcacctctccgaattgtttaactttctc-tttagttaaataggtgattttcacatattttcagttt 39990218  T
Q  168 tcttttgcttgtttt 182  Q
    ||||| | |||||||    
T  39990217 tctttcgtttgtttt 39990203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 4028168 - 4028264
Alignment:
Q  74 gtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcga-ttctcacatattttaagttttcttt 172  Q
    ||||||| |||| ||||||||||  ||||||||||   ||  ||||||| ||||||||||||||||||||| || || ||| ||||||||||||||||||    
T  4028168 gtgatttagggttaattttgacccaaaatcacccc---gacttatttttctttctcttttagttaaataagtgatttttcatatattttaagttttcttt 4028264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 36579448 - 36579340
Alignment:
Q  75 tgattttgggtcaattttgacctgaaa-tcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttctttt 173  Q
    |||||| ||||||||||||||| |||| ||||||||||||| | |||||  |||| |  ||||| |||||| ||||| ||||||||||  ||||||||||    
T  36579448 tgatttagggtcaattttgacccgaaaatcacccctccgaattgtttttccttctatcctagttgaataagtgattc-cacatattttttgttttctttt 36579350  T
Q  174 gcttgttttt 183  Q
    | ||||||||    
T  36579349 gtttgttttt 36579340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 43256663 - 43256599
Alignment:
Q  97 tgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatatttt 161  Q
    |||||||||| ||  ||| | ||||||||||||||||||||||||||| |||| |||||||||||    
T  43256663 tgaaatcaccactttgaattgtttttatttctcttttagttaaataagtgattatcacatatttt 43256599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 28665058 - 28664940
Alignment:
Q  65 gtcagatgggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaa 163  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||||||  | |||||  |||| |  || || |||||| |||| |||||||||||      
T  28665058 gtcagatgggtgatttagggtcaattttgaccctaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatt-tcacatattttct 28664960  T
Q  164 gttttcttttgcttgttttt 183  Q
    ||||||||| | ||||||||    
T  28664959 gttttctttcgtttgttttt 28664940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 5237936 - 5238050
Alignment:
Q  72 gggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcga-ttctcacatattttaagttttct 170  Q
    ||||||||| ||||||| ||||||   ||||||||| ||  || | ||||  ||||||||||||||||||||| || || ||||||||||| | ||||||    
T  5237936 gggtgatttagggtcaaatttgactcaaaatcacccttctaaattgttttgctttctcttttagttaaataagagatttttcacatattttcaattttct 5238035  T
Q  171 tttgcttgttttttg 185  Q
    |||| | ||||||||    
T  5238036 tttgttggttttttg 5238050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 45457695 - 45457585
Alignment:
Q  72 gggtgattttgggtcaattttgac-ctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttct 170  Q
    ||||||||| |||||||||||||| |  ||||||| |||||||| | |||||  |||| | ||| || |||||| |||| |||||||||||| |||||||    
T  45457695 gggtgatttagggtcaattttgacgcaaaaatcactcctccgaattgtttttccttctatcttaattgaataagtgatt-tcacatattttatgttttct 45457597  T
Q  171 tttgcttgtttt 182  Q
    || | |||||||    
T  45457596 ttcgtttgtttt 45457585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 9785299 - 9785410
Alignment:
Q  72 gggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttct 170  Q
    ||||||||| ||||||||||||| ||  ||||||||||| |||| | |||||  |||| | ||| || |||||| |||| |||||||||||  |||||||    
T  9785299 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcttaattgaataagtgatt-tcacatattttttgttttct 9785397  T
Q  171 tttgcttgttttt 183  Q
    |||| || |||||    
T  9785398 tttgtttattttt 9785410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 23303503 - 23303563
Alignment:
Q  83 ggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataa 143  Q
    |||||||||||| ||||||||| |||| | || | ||||| ||||||||| ||||||||||    
T  23303503 ggtcaattttgatctgaaatcagcccttcaaattgtttttctttctctttcagttaaataa 23303563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 24988500 - 24988452
Alignment:
Q  65 gtcagatgggtgattttgggtcaattttgacctgaaatcacccctccga 113  Q
    |||||| ||||||||  |||||||||||||||  |||||||||||||||    
T  24988500 gtcagaggggtgattcagggtcaattttgacccaaaatcacccctccga 24988452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 31609735 - 31609823
Alignment:
Q  83 ggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttcttt 172  Q
    |||||||||||||||| |||||||||||| || | |||||||||||||||||||| ||| || |||| |||||| |||| ||||||||||    
T  31609735 ggtcaattttgacctgcaatcacccctccaaattgtttttatttctcttttagtttaatgagtgatt-tcacatttttttagttttcttt 31609823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 18889058 - 18889158
Alignment:
Q  72 gggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttctt 171  Q
    ||||||||| | |||||||||| ||  |||||||||||| ||| | ||||||||||||||||||  ||||||  |||| ||||||| ||| | |||||||    
T  18889058 gggtgatttagagtcaattttggccgaaaatcacccctctgaattgtttttatttctcttttagcaaaataaatgattttcacatactttcaattttctt 18889157  T
Q  172 t 172  Q
    |    
T  18889158 t 18889158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 31427237 - 31427182
Alignment:
Q  118 tttttatttctcttttagttaaataagcgattctcacatattttaagttttctttt 173  Q
    |||| |||||||||||||| |||||||  ||| |||||||||||||||||||||||    
T  31427237 ttttaatttctcttttagtaaaataagttattttcacatattttaagttttctttt 31427182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 38783050 - 38783147
Alignment:
Q  72 gggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttc 169  Q
    |||||||||  ||| |||||||| |||||||||  | |  ||| | ||||| ||||||||||||||||||||| |||| | ||||||||| |||||||    
T  38783050 gggtgatttaaggttaattttgatctgaaatcattcatttgaattgtttttctttctcttttagttaaataagtgattttaacatattttcagttttc 38783147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 42490876 - 42490986
Alignment:
Q  73 ggtgattttgggtcaattttgacctgaaa-tcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttctt 171  Q
    |||||||| ||||||| |||||||| ||| ||||||||||||| | |||||  |||| | ||| || |||||| |||| |||||||| || |||||||||    
T  42490876 ggtgatttagggtcaagtttgacctaaaaatcacccctccgaattgtttttcgttctatcttaattgaataagtgatt-tcacatatcttcagttttctt 42490974  T
Q  172 ttgcttgttttt 183  Q
    | | ||||||||    
T  42490975 tcgtttgttttt 42490986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 17347574 - 17347622
Alignment:
Q  65 gtcagatgggtgattttgggtcaattttgacctgaaatcacccctccga 113  Q
    ||||||||| |||||| |||||||||||||||  ||||||||| |||||    
T  17347574 gtcagatggatgatttagggtcaattttgaccaaaaatcacccatccga 17347622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 5327613 - 5327512
Alignment:
Q  82 gggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttt 181  Q
    |||| ||||||||| | ||||||||||| | || | ||||| ||||||||| ||||||||||| |||| ||||| ||||| |||||||||| | ||||||    
T  5327613 gggttaattttgacttaaaatcacccctgcaaattgtttttctttctctttcagttaaataagtgattatcacaaattttcagttttctttcgtttgttt 5327514  T
Q  182 tt 183  Q
    ||    
T  5327513 tt 5327512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 4219175 - 4219273
Alignment:
Q  83 ggtcaattttgacctgaaatcacccctccgaagtatttttatttc--tcttttagttaaataagcgattctcacatattttaagttttcttttgcttgtt 180  Q
    ||||||||||||||||||||||| | ||||||    || ||||||  || |||||||||||||| |||| ||||||||||| |||||||||| | |||||    
T  4219175 ggtcaattttgacctgaaatcactcatccgaa----ttgtatttccttcctttagttaaataagtgattttcacatattttcagttttctttcgtttgtt 4219270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 31270304 - 31270419
Alignment:
Q  68 agatgggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagtt 166  Q
    ||||||||||||| ||||||||||||| ||  ||||||||||| |||| |||||||  |||| |  || || |||||| |||| |||||||||||| |||    
T  31270304 agatgggtgatttagggtcaattttgacccaaaaatcaccccttcgaattatttttccttctatcctaattgaataagtgatt-tcacatattttatgtt 31270402  T
Q  167 ttcttttgcttgttttt 183  Q
    |||||| | ||||||||    
T  31270403 ttctttcgtttgttttt 31270419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 13702125 - 13702019
Alignment:
Q  66 tcagatgggtgattttgggtcaattttgacctgaaa-tcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaag 164  Q
    ||||| ||||||||| |||||||||||||||  ||| |||||||| |||| ||||||| ||||| |  || || |||||| |||| |||||||||||  |    
T  13702125 tcagaggggtgatttagggtcaattttgacccaaaagtcaccccttcgaattatttttctttctatcataattgaataagtgatt-tcacatattttctg 13702027  T
Q  165 ttttcttt 172  Q
    ||||||||    
T  13702026 ttttcttt 13702019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 34961011 - 34960894
Alignment:
Q  66 tcagatgggtgattttgggtcaattttgacctgaaa-tcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaag 164  Q
    ||||| |||||| || |||||||||||||||  ||| ||||||||| ||| | |||||  |||| || || || |||||| |||| |||||||||||| |    
T  34961011 tcagaggggtgacttagggtcaattttgacccaaaaatcacccctcagaattgttttttcttctattctaattgaataagtgatt-tcacatattttatg 34960913  T
Q  165 ttttcttttgcttgttttt 183  Q
    |||||||| | ||||||||    
T  34960912 ttttctttcgtttgttttt 34960894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 49552431 - 49552389
Alignment:
Q  69 gatgggtgattttgggtcaatt-ttgacctgaaatcacccctc 110  Q
    |||||||| ||||||||||||| ||||||||||||||||||||    
T  49552431 gatgggtggttttgggtcaattcttgacctgaaatcacccctc 49552389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 49628228 - 49628123
Alignment:
Q  78 ttttgggtcaattttgacct-gaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttcttttgct 176  Q
    ||||||||||||||||||||  |||||||||||| ||| | |||||  |||| |  ||||| |||||| |||| |||||||||||  ||||||||| | |    
T  49628228 ttttgggtcaattttgacctaaaaatcacccctctgaattgtttttccttctatcctagttgaataagtgatt-tcacatattttttgttttctttcgtt 49628130  T
Q  177 tgttttt 183  Q
    |||||||    
T  49628129 tgttttt 49628123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 32080908 - 32080859
Alignment:
Q  65 gtcagatgggtgattttgggtcaattttga-cctgaaatcacccctccga 113  Q
    |||||||||||||||| ||||||||||||| ||  |||||||||||||||    
T  32080908 gtcagatgggtgatttagggtcaattttgacccaaaaatcacccctccga 32080859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 11819058 - 11819165
Alignment:
Q  65 gtcagatgggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaa 163  Q
    |||||| ||||||||| ||||||||||||| ||  |||||||||||||||  | |||||  ||||   ||| || |||||| |||| ||||||||||||     
T  11819058 gtcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatt-tcacatattttat 11819156  T
Q  164 gttttcttt 172  Q
    |||||||||    
T  11819157 gttttcttt 11819165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 29503332 - 29503368
Alignment:
Q  72 gggtgattttgggtcaatt-ttgacctgaaatcaccc 107  Q
    ||||||||||||||||||| |||||||||||||||||    
T  29503332 gggtgattttgggtcaattcttgacctgaaatcaccc 29503368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 51202454 - 51202418
Alignment:
Q  72 gggtgattttgggtcaatt-ttgacctgaaatcaccc 107  Q
    ||||||||||||||||||| |||||||||||||||||    
T  51202454 gggtgattttgggtcaattcttgacctgaaatcaccc 51202418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 15175797 - 15175872
Alignment:
Q  74 gtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgatt 149  Q
    |||||||| ||||||||||||||  |||||||||||||||| | ||||| ||||| ||||| ||||||||| ||||    
T  15175797 gtgattttcggtcaattttgacccaaaatcacccctccgaaatgtttttctttctattttacttaaataagtgatt 15175872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 15470371 - 15470296
Alignment:
Q  74 gtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgatt 149  Q
    |||||||| ||||||||||||||  |||||||||||| ||| | ||||| ||||| ||||| ||||||||| ||||    
T  15470371 gtgatttttggtcaattttgacccaaaatcacccctctgaaatgtttttctttctattttacttaaataagtgatt 15470296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 7870151 - 7870221
Alignment:
Q  72 gggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaata 142  Q
    ||||||||| ||||||||||| | |||||||||||  || ||| | || || |||||||||||||||||||    
T  7870151 gggtgatttagggtcaatttttatctgaaatcaccaatcggaattgttcttctttctcttttagttaaata 7870221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 21507947 - 21507836
Alignment:
Q  72 gggtgattttgggtcaattttgacctgaa-atcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttct 170  Q
    ||||||||| |||||||||||||||  || ||||||||||| || | |||||  |||| |  ||||| |||||| |||| |||||||||||  |||||||    
T  21507947 gggtgatttagggtcaattttgacccaaacatcacccctccaaattgtttttccttctatcctagttgaataagtgatt-tcacatattttttgttttct 21507849  T
Q  171 tttgcttgttttt 183  Q
    || | ||||||||    
T  21507848 ttcgtttgttttt 21507836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 10952403 - 10952323
Alignment:
Q  76 gattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacat 156  Q
    ||||| |||||||| ||||  ||||||||||||| | || ||||||| ||| ||||||||||||||||| |||| ||||||    
T  10952403 gatttagggtcaatattgatttgaaatcaccccttcaaattatttttctttttcttttagttaaataagtgattttcacat 10952323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 10960408 - 10960328
Alignment:
Q  76 gattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacat 156  Q
    ||||| |||||||| ||||  ||||||||||||| | || ||||||| ||| ||||||||||||||||| |||| ||||||    
T  10960408 gatttagggtcaatattgatttgaaatcaccccttcaaattatttttctttttcttttagttaaataagtgattttcacat 10960328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 19384338 - 19384425
Alignment:
Q  84 gtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttctt 171  Q
    |||||||||||||  |||| |||||| |||| | ||||| ||||||||||||||||| |||  ||| ||||||||||| || ||||||    
T  19384338 gtcaattttgacccaaaataaccccttcgaaatgtttttctttctcttttagttaaacaagtaattttcacatattttcagctttctt 19384425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 17949123 - 17949165
Alignment:
Q  69 gatgggtgattttgggtcaatt-ttgacctgaaatcacccctc 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  17949123 gatgggtgattttgggtcaattattgacctgaaatcacccctc 17949165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 2968507 - 2968625
Alignment:
Q  68 agatgggtgattttgggtcaattttgacctgaaatcacc---cctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaag 164  Q
    ||||| |||||||  |||||||||||||   ||||||||   |||||||  | ||||| ||| | || || ||||||||| |||| ||||||||||| ||    
T  2968507 agatgagtgatttatggtcaattttgactcaaaatcacctctcctccgagttgtttttctttatattctaattaaataagtgattttcacatatttttag 2968606  T
Q  165 ttttcttttgcttgttttt 183  Q
    |||||||| | ||||||||    
T  2968607 ttttctttcgtttgttttt 2968625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 37612635 - 37612746
Alignment:
Q  72 gggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttct 170  Q
    ||||||||| ||||||||||||| ||  |||||||||||||||| | |||||  |||| |  ||||| |||||| |||| |||||||||||   ||||||    
T  37612635 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattttttttccttctatcctagttgaataagtgatt-tcacatattttttattttct 37612733  T
Q  171 tttgcttgttttt 183  Q
    || | ||||||||    
T  37612734 ttcgtttgttttt 37612746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 374317 - 374376
Alignment:
Q  124 tttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttttt 183  Q
    ||||||||||||||||||||  |||| |||| |||||| |||||| ||||| ||||||||    
T  374317 tttctcttttagttaaataaatgattttcacgtattttcagttttattttgtttgttttt 374376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 10649328 - 10649367
Alignment:
Q  72 gggtgattttgggtcaatt-ttgacctgaaatcacccctc 110  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  10649328 gggtgattttgggtcaattcttgacctgaaatcacccctc 10649367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 17331303 - 17331421
Alignment:
Q  65 gtcagatgggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaa 163  Q
    |||||| ||||||||| ||||||||||||| ||  |||||||||||||||  | |||||  |||| | ||| || |||||| |||| |||||||||||      
T  17331303 gtcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctatcttaattgaataagtgatt-tcacatattttct 17331401  T
Q  164 gttttcttttgcttgttttt 183  Q
    ||||||||| | ||||||||    
T  17331402 gttttctttcgtttgttttt 17331421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 26612049 - 26612097
Alignment:
Q  125 ttctcttttagttaaataagcgattctcacatattttaagttttctttt 173  Q
    |||||||||||||||||| | |||| ||||||| ||| |||||||||||    
T  26612049 ttctcttttagttaaatacgtgattttcacatacttttagttttctttt 26612097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 39179939 - 39179856
Alignment:
Q  99 aaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttttt 183  Q
    |||||||||||||||| |||||||  |||| || || || |||||| |||| |||||||||||  ||||||||| | ||||||||    
T  39179939 aaatcacccctccgaattatttttccttctattctaattgaataagtgatt-tcacatattttctgttttctttcgtttgttttt 39179856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 43493854 - 43493965
Alignment:
Q  72 gggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttct 170  Q
    ||||||||| ||||||||||||| ||  |||||||| ||||||| | |||||  |||| || || || |||||| |||| |||||||||||  |||||||    
T  43493854 gggtgatttagggtcaattttgatccaaaaatcacctctccgaattgtttttccttctattctaattgaataagtgatt-tcacatattttttgttttct 43493952  T
Q  171 tttgcttgttttt 183  Q
    || | ||||||||    
T  43493953 ttcgtttgttttt 43493965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 15813 - 15739
Alignment:
Q  75 tgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgatt 149  Q
    ||||||| ||||||||||||| ||||||||||  ||  || | ||||| ||||||||||| ||||||||| ||||    
T  15813 tgatttttggtcaattttgacttgaaatcaccaatctaaattgtttttctttctcttttaattaaataagtgatt 15739  T

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