View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_low_47 (Length: 220)
Name: NF6776_low_47
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 51207615 - 51207774
Alignment:
| Q |
44 |
cccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaa |
143 |
Q |
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| T |
51207615 |
cccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagagggcctcccaaacacaa |
51207714 |
T |
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| Q |
144 |
caccaaaccgcaactgcagtggcatcacagaaaaactgcaactctgcacaggactgctgt |
203 |
Q |
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| T |
51207715 |
caccaaaccgcaactgcagtggcatcacagaaaaactgcaactttgcacaggactgctgt |
51207774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 43430057 - 43430187
Alignment:
| Q |
73 |
agaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaacaccaaaccgcaactgcagtggcatcaca |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
43430057 |
agaaaccaaaatagcaataaaagccagccagaagcaactccgaaacacgctagcaagcctcccaaacacaacaccaaatcacaactgcagtggcatcacg |
43430156 |
T |
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| Q |
173 |
gaaaaactgcaactctgcacaggactgctgt |
203 |
Q |
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| T |
43430157 |
gaaaaactgcaactctgcacaggactgctgt |
43430187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 44 - 199
Target Start/End: Complemental strand, 6256218 - 6256063
Alignment:
| Q |
44 |
cccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaa |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6256218 |
cccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagctatccagaagcaacttcaaaacacgctagcaagcctcccaaacacaa |
6256119 |
T |
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| Q |
144 |
caccaaaccgcaactgcagtggcatcacagaaaaactgcaactctgcacaggactg |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
6256118 |
caccaaaccgcaactgcagtggcatcactgaaaaactgcaactctgcataggactg |
6256063 |
T |
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