View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6776_low_49 (Length: 217)
Name: NF6776_low_49
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_49 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 4653279 - 4653072
Alignment:
| Q |
7 |
cacatgtggttaaaaattattattacttcattagnnnnnnnnnnaaaccttcctgcttacaatttatttatgtaggttgagaatcacaaatttggttgat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4653279 |
cacatgtggttaaaaattattattacttcattagttttttc---aaaccttcctgctttcaatttatttatgtaggttgagaatcataaatttggttgat |
4653183 |
T |
|
| Q |
107 |
ttgaacaatcttccaaacaatgaaccaagtggtaattcagaaagaggattagttgagttgagtagcaatgaacaagaagtaattactattgaaaactatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4653182 |
ttgaacaatcttccaaacaatgaaccatgtggtaattcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattactattgaaaactatt |
4653083 |
T |
|
| Q |
207 |
tcgaacctttt |
217 |
Q |
| |
|
||||||||||| |
|
|
| T |
4653082 |
tcgaacctttt |
4653072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 8925568 - 8925402
Alignment:
| Q |
51 |
aaaccttcctgcttacaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaattcagaaag |
150 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8925568 |
aaaccttcctgctttcaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaag |
8925469 |
T |
|
| Q |
151 |
aggattagttgagttgagtagcaatgaacaagaagtaattactattgaaaactatttcgaacctttt |
217 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
8925468 |
tgaagtagttgagttgagtagcaatgaacaagaagcaattactattgaaaacgattttgaacctttt |
8925402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 8935825 - 8935659
Alignment:
| Q |
51 |
aaaccttcctgcttacaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaattcagaaag |
150 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8935825 |
aaaccttcctgctttcaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaag |
8935726 |
T |
|
| Q |
151 |
aggattagttgagttgagtagcaatgaacaagaagtaattactattgaaaactatttcgaacctttt |
217 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
8935725 |
tgaagtagttgagttgagtagcaatgaacaagaagcaattactattgaaaacgattttgaacctttt |
8935659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 16150646 - 16150480
Alignment:
| Q |
51 |
aaaccttcctgcttacaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaattcagaaag |
150 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16150646 |
aaaccttcctgctttcaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaag |
16150547 |
T |
|
| Q |
151 |
aggattagttgagttgagtagcaatgaacaagaagtaattactattgaaaactatttcgaacctttt |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
16150546 |
tggagtagttgagttgagtagcaatgaacaagaagcaattactattgaaaacgattttgaacctttt |
16150480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 23301665 - 23301831
Alignment:
| Q |
51 |
aaaccttcctgcttacaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaattcagaaag |
150 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23301665 |
aaaccttcctgctttcaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaag |
23301764 |
T |
|
| Q |
151 |
aggattagttgagttgagtagcaatgaacaagaagtaattactattgaaaactatttcgaacctttt |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
23301765 |
tggagtagttgagttgagtagcaatgaacaagaagcaattactattgaaaacgattttgaacctttt |
23301831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 26926066 - 26926148
Alignment:
| Q |
67 |
aatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaattcagaaa |
149 |
Q |
| |
|
||||||||| |||||||| || ||||| |||| |||||||||||||| ||||||| ||| ||||| ||| ||||||||||| |
|
|
| T |
26926066 |
aatttatttgtgtaggttaggagtcacagatttaattgatttgaacaatgttccaaataataaaccatgtgataattcagaaa |
26926148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 1000677 - 1000601
Alignment:
| Q |
67 |
aatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaatt |
143 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||| ||||| ||| ||||| |
|
|
| T |
1000677 |
aatttatttgtgtaggttgagagtcacaaatttaattgatttgaacaatcttccaaataataaaccatgtgataatt |
1000601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University