View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_low_50 (Length: 206)

Name: NF6776_low_50
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6776_low_50
NF6776_low_50
[»] chr5 (21 HSPs)
chr5 (97-204)||(15382430-15382534)
chr5 (88-203)||(21541984-21542094)
chr5 (97-204)||(13287403-13287505)
chr5 (88-204)||(21522703-21522814)
chr5 (88-204)||(21533269-21533380)
chr5 (88-134)||(21351900-21351946)
chr5 (97-205)||(21191060-21191163)
chr5 (95-141)||(7218269-7218315)
chr5 (142-204)||(41995424-41995486)
chr5 (97-141)||(6247633-6247677)
chr5 (97-152)||(12199929-12199985)
chr5 (89-182)||(30135288-30135377)
chr5 (97-141)||(33178036-33178080)
chr5 (94-141)||(24906302-24906349)
chr5 (34-77)||(27932311-27932354)
chr5 (97-135)||(15884005-15884043)
chr5 (99-141)||(21576751-21576793)
chr5 (100-141)||(39698552-39698593)
chr5 (97-141)||(10298580-10298624)
chr5 (93-141)||(22299481-22299528)
chr5 (97-141)||(42893371-42893415)
[»] chr4 (18 HSPs)
chr4 (101-204)||(27706185-27706283)
chr4 (97-201)||(23292990-23293089)
chr4 (88-204)||(19482621-19482732)
chr4 (99-200)||(12708103-12708200)
chr4 (161-204)||(4157111-4157154)
chr4 (153-204)||(20633438-20633489)
chr4 (97-141)||(29205455-29205499)
chr4 (141-205)||(35158028-35158092)
chr4 (30-135)||(42640546-42640647)
chr4 (89-138)||(28000738-28000787)
chr4 (100-141)||(28964255-28964296)
chr4 (97-141)||(6485615-6485659)
chr4 (101-141)||(11596360-11596400)
chr4 (97-133)||(12797342-12797378)
chr4 (141-201)||(12895317-12895377)
chr4 (97-141)||(21945514-21945558)
chr4 (97-182)||(49431000-49431081)
chr4 (97-141)||(54580027-54580071)
[»] chr1 (24 HSPs)
chr1 (34-179)||(18471276-18471414)
chr1 (88-202)||(47989453-47989561)
chr1 (87-201)||(6612165-6612274)
chr1 (88-204)||(31694705-31694816)
chr1 (87-182)||(5944256-5944348)
chr1 (97-204)||(42359453-42359555)
chr1 (97-199)||(28663562-28663663)
chr1 (36-141)||(1486646-1486757)
chr1 (97-141)||(18337340-18337384)
chr1 (97-141)||(24577190-24577234)
chr1 (33-204)||(38078600-38078762)
chr1 (97-141)||(40258937-40258981)
chr1 (141-204)||(9103593-9103656)
chr1 (97-205)||(48040465-48040569)
chr1 (32-141)||(1704933-1705040)
chr1 (97-139)||(1815270-1815312)
chr1 (97-135)||(51410042-51410080)
chr1 (88-141)||(113310-113363)
chr1 (100-141)||(32434723-32434764)
chr1 (152-204)||(10577789-10577841)
chr1 (97-141)||(19058860-19058904)
chr1 (97-141)||(22515891-22515935)
chr1 (97-141)||(22881620-22881664)
chr1 (152-204)||(48548016-48548068)
[»] scaffold0027 (1 HSPs)
scaffold0027 (97-204)||(46635-46737)
[»] chr3 (30 HSPs)
chr3 (97-204)||(16000020-16000122)
chr3 (97-204)||(15796298-15796400)
chr3 (97-204)||(10335290-10335392)
chr3 (94-141)||(21256987-21257034)
chr3 (141-204)||(3164068-3164131)
chr3 (100-184)||(14216865-14216944)
chr3 (100-184)||(14222994-14223073)
chr3 (99-193)||(3610597-3610686)
chr3 (97-134)||(3865692-3865729)
chr3 (97-134)||(8593155-8593192)
chr3 (168-205)||(51512244-51512281)
chr3 (141-204)||(750661-750725)
chr3 (97-141)||(26508121-26508165)
chr3 (97-141)||(28918012-28918056)
chr3 (98-182)||(35312029-35312108)
chr3 (97-141)||(39756247-39756291)
chr3 (100-141)||(11610532-11610573)
chr3 (100-141)||(14209124-14209165)
chr3 (88-193)||(41961645-41961745)
chr3 (88-141)||(49651781-49651834)
chr3 (97-141)||(1509550-1509594)
chr3 (101-141)||(4987299-4987339)
chr3 (97-141)||(8587025-8587069)
chr3 (97-141)||(10954963-10955007)
chr3 (97-141)||(20503476-20503520)
chr3 (88-132)||(22774065-22774109)
chr3 (97-141)||(34185127-34185171)
chr3 (97-141)||(34910328-34910372)
chr3 (97-141)||(51206357-51206401)
chr3 (97-141)||(55401086-55401130)
[»] chr8 (15 HSPs)
chr8 (88-206)||(22651927-22652040)
chr8 (99-204)||(24857962-24858064)
chr8 (97-204)||(29510308-29510410)
chr8 (34-141)||(8342983-8343086)
chr8 (97-202)||(2572060-2572160)
chr8 (97-141)||(4948663-4948707)
chr8 (97-141)||(25192351-25192395)
chr8 (97-141)||(25566852-25566896)
chr8 (99-141)||(18407730-18407772)
chr8 (162-204)||(24413624-24413666)
chr8 (141-201)||(4673468-4673528)
chr8 (161-201)||(18964127-18964167)
chr8 (97-141)||(20873080-20873124)
chr8 (101-141)||(22596005-22596045)
chr8 (97-141)||(40332202-40332246)
[»] chr2 (17 HSPs)
chr2 (97-188)||(19536401-19536488)
chr2 (88-204)||(23058437-23058549)
chr2 (141-201)||(36756387-36756447)
chr2 (32-128)||(29367281-29367379)
chr2 (97-179)||(18421941-18422018)
chr2 (97-205)||(15972825-15972928)
chr2 (97-181)||(21624242-21624322)
chr2 (99-184)||(20473295-20473375)
chr2 (97-141)||(2438723-2438767)
chr2 (94-141)||(6940266-6940313)
chr2 (98-141)||(30404855-30404898)
chr2 (100-139)||(33153437-33153476)
chr2 (99-141)||(30717536-30717578)
chr2 (97-139)||(38442320-38442362)
chr2 (90-126)||(11223860-11223896)
chr2 (168-204)||(26769470-26769506)
chr2 (105-174)||(29367381-29367446)
[»] scaffold0021 (1 HSPs)
scaffold0021 (97-202)||(130437-130537)
[»] chr7 (22 HSPs)
chr7 (102-201)||(13557750-13557847)
chr7 (88-203)||(24339596-24339706)
chr7 (88-141)||(9778511-9778564)
chr7 (97-141)||(3991335-3991379)
chr7 (97-204)||(11061080-11061182)
chr7 (88-141)||(7438717-7438770)
chr7 (88-141)||(26033456-26033509)
chr7 (88-158)||(18038994-18039063)
chr7 (146-201)||(18213082-18213137)
chr7 (101-204)||(25481855-25481953)
chr7 (34-141)||(5409771-5409884)
chr7 (99-141)||(13770702-13770744)
chr7 (97-135)||(21560520-21560558)
chr7 (88-141)||(11665435-11665488)
chr7 (139-204)||(21141023-21141088)
chr7 (88-198)||(32094015-32094121)
chr7 (88-166)||(2334239-2334314)
chr7 (156-200)||(6028582-6028626)
chr7 (97-141)||(9408338-9408382)
chr7 (153-201)||(30730993-30731041)
chr7 (97-141)||(33994223-33994267)
chr7 (153-181)||(48246868-48246896)
[»] chr6 (24 HSPs)
chr6 (97-193)||(34595098-34595189)
chr6 (88-202)||(16766652-16766761)
chr6 (101-204)||(8776981-8777079)
chr6 (88-198)||(8365514-8365619)
chr6 (97-182)||(16833283-16833363)
chr6 (88-204)||(9107365-9107476)
chr6 (97-141)||(9522902-9522946)
chr6 (34-173)||(24645464-24645600)
chr6 (97-135)||(4877960-4877998)
chr6 (97-202)||(426518-426618)
chr6 (147-200)||(24353133-24353186)
chr6 (97-141)||(10770678-10770722)
chr6 (34-141)||(28715306-28715414)
chr6 (141-204)||(7938069-7938132)
chr6 (41-141)||(7930316-7930413)
chr6 (99-204)||(1681711-1681811)
chr6 (97-141)||(9911532-9911577)
chr6 (100-141)||(31384931-31384972)
chr6 (97-141)||(1700363-1700407)
chr6 (97-141)||(7801160-7801204)
chr6 (97-141)||(7977834-7977878)
chr6 (88-165)||(8713971-8714044)
chr6 (89-141)||(18252747-18252799)
chr6 (97-133)||(28152117-28152153)
[»] scaffold0223 (1 HSPs)
scaffold0223 (100-188)||(20141-20224)
[»] scaffold0083 (1 HSPs)
scaffold0083 (97-182)||(45534-45615)
[»] scaffold0136 (1 HSPs)
scaffold0136 (100-141)||(3856-3897)
[»] scaffold0053 (1 HSPs)
scaffold0053 (141-202)||(8753-8814)
[»] scaffold0018 (1 HSPs)
scaffold0018 (88-188)||(178813-178909)
[»] scaffold0025 (1 HSPs)
scaffold0025 (97-135)||(23787-23825)
[»] scaffold0227 (1 HSPs)
scaffold0227 (160-205)||(15007-15052)
[»] scaffold0171 (1 HSPs)
scaffold0171 (100-182)||(23485-23563)
[»] scaffold0652 (1 HSPs)
scaffold0652 (97-141)||(466-510)
[»] scaffold0191 (1 HSPs)
scaffold0191 (161-197)||(31449-31485)
[»] scaffold0103 (1 HSPs)
scaffold0103 (101-141)||(51822-51862)
[»] scaffold0011 (1 HSPs)
scaffold0011 (97-141)||(17753-17797)


Alignment Details
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 15382534 - 15382430
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    |||||||||||||||||||||||||||| ||| ||||||   | |||||||||  ||||||| |||||||||||| |||||||||| ||||| |||||||    
T  15382534 accgacacttgtaattatactgaattatatgattttttt---tcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtcc 15382438  T
Q  197 gtatccgt 204  Q
    ||||||||    
T  15382437 gtatccgt 15382430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 21542094 - 21541984
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||||||||||||| |||||||||||| |  |||||||     ||||||| |||||||| | ||||| ||||||||||||||||||||    
T  21542094 cgacacgacaccgacacttgtaattacactgaattatgttatctttttaa-----attattagttgtgtcggcatgtcaatgtctgtgtcgtgtctggtg 21542000  T
Q  188 ttcgtgtccgtatccg 203  Q
    | ||||||||||||||    
T  21541999 tccgtgtccgtatccg 21541984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 13287403 - 13287505
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||||||     |||  ||||||||||||| | |||| |||||||||| ||||| |||||||    
T  13287403 accgacacttgtagttacactgaattatgtgattttttcaaatta-----ttatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtgtcc 13287497  T
Q  197 gtatccgt 204  Q
    ||||||||    
T  13287498 gtatccgt 13287505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 21522814 - 21522703
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||| ||||||||| |||||||||||| | |||||||||    |||||||  ||||||| ||||||| |||| |||||||||| ||||    
T  21522814 cgacacgacaccgacaattgtaattacactgaattatgtta-ttttttaaa----attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 21522720  T
Q  188 ttcgtgtccgtatccgt 204  Q
      |||||||||||||||    
T  21522719 accgtgtccgtatccgt 21522703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 21533380 - 21533269
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||| ||||||||| |||||||||||| | |||||||||    |||||||  ||||||| ||||||| |||| |||||||||| ||||    
T  21533380 cgacacgacaccgacaattgtaattacactgaattatgtta-ttttttaaa----attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 21533286  T
Q  188 ttcgtgtccgtatccgt 204  Q
      |||||||||||||||    
T  21533285 accgtgtccgtatccgt 21533269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 21351900 - 21351946
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttt 134  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  21351900 cgacatgacaccgacacttgtaattacactgaattatgtgacttttt 21351946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 21191060 - 21191163
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||||||| |||||||||||||| ||||     | |||||||||  ||||||| | ||||| |||| |||||||||| |||||  ||||||    
T  21191060 accgacacttgtaattacactgaattatgtgattttt-----tcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccggtgtcagtgtcc 21191154  T
Q  197 gtatccgta 205  Q
    |||| ||||    
T  21191155 gtattcgta 21191163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 7218269 - 7218315
Alignment:
Q  95 ataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||||| |||||||||||||| || |||||||||    
T  7218269 ataccgacacttgtaattacactgaattatgtgatttatttaaatta 7218315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 41995486 - 41995424
Alignment:
Q  142 aattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    |||||||| |||||||| ||||||| |||||||||||| ||  |||| |||||||||||||||    
T  41995486 aattattagttgtgtcggcgtgtcagtgtctgtgtcgtatccagtgtccgtgtccgtatccgt 41995424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 6247677 - 6247633
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  6247677 accgacacttgtaattacactgaattatgtgattttttcaaatta 6247633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 12199985 - 12199929
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgactttttta-aattaaattattaatt 152  Q
    |||||||||||||||| ||||||||||||||| |||||||   ||||||||||||||    
T  12199985 accgacacttgtaattgtactgaattatgtgatttttttatctttaaattattaatt 12199929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 30135377 - 30135288
Alignment:
Q  89 gacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtc 182  Q
    ||||||| ||||||||||||||||| | ||| |||||||| |||||    | ||||||||| |||||||| ||||||  | |||||||||||||    
T  30135377 gacatgacaccgacacttgtaattacaatgagttatgtgatttttt----tcaaattattagttgtgtcggcgtgtcggtatctgtgtcgtgtc 30135288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 33178080 - 33178036
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||    
T  33178080 accgacacttgtaattacactaaattatgtgatttttttaaatta 33178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 24906302 - 24906349
Alignment:
Q  94 gataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||||||||| |||||||||||| | ||||| ||||||    
T  24906302 gataccgacacttgtaattacactgaattatgtcattttttcaaatta 24906349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 27932354 - 27932311
Alignment:
Q  34 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtc 77  Q
    |||||||||||||||||||||||||||||| ||||  |||||||    
T  27932354 ctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtc 27932311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 15884043 - 15884005
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgactttttt 135  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  15884043 accgacacttgtaattacactgaattatgtgattttttt 15884005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 21576751 - 21576793
Alignment:
Q  99 cgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||    
T  21576751 cgacacttgtaattacactgaattatgtgattttttcaaatta 21576793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 39698593 - 39698552
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||| |||||||||||||| ||||| ||||||    
T  39698593 gacacttgtaattacactgaattatgtgattttttcaaatta 39698552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 10298624 - 10298580
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| | || ||||||||||||||| ||||||    
T  10298624 accgacacttgtaattacattgtattatgtgactttttcaaatta 10298580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 22299481 - 22299528
Alignment:
Q  93 tgataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||| ||| |||||||||||||||||| |||||| ||||||||||||    
T  22299481 tgatactgacccttgtaattatactgaatcatgtga-ttttttaaatta 22299528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 42893415 - 42893371
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||| ||||||||| ||||| ||||||    
T  42893415 accgacacttgtaattacactggattatgtgattttttcaaatta 42893371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 27706185 - 27706283
Alignment:
Q  101 acacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtat 200  Q
    ||||||||||||| ||| |||||||||| ||||||||     |||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||    
T  27706185 acacttgtaattacactaaattatgtgatttttttaa-----attattaattgtgtcgacgtgtcagtgtccctgtcgtgtctggtgtccgtgtccgtat 27706279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 23292990 - 23293089
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    |||||||||||||||||||||||||||||||| ||||     | |||||||||  ||||||| |||||||||||| |||||||||| ||||| |||||||    
T  23292990 accgacacttgtaattatactgaattatgtgattttt-----tcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtcc 23293084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 19482732 - 19482621
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||| ||||||||||||| || |||||||||||  |||     | ||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  19482732 cgacacgacaccaacacttgtaattacaccgaattatgtgatattt-----tcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtctggtg 19482638  T
Q  188 ttcgtgtccgtatccgt 204  Q
    |  |||| |||||||||    
T  19482637 tctgtgttcgtatccgt 19482621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 12708200 - 12708103
Alignment:
Q  99 cgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgt 198  Q
    ||||||||||||||| |||||||||| | | |||||||||   |||||||| |||||||  ||||||| |||||| |||||||||| ||| |||||||||    
T  12708200 cgacacttgtaattacactgaattatttca-ttttttaaa---aattattagttgtgtctgcgtgtcagtgtctgcgtcgtgtctgatgtccgtgtccgt 12708105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 4157154 - 4157111
Alignment:
Q  161 gtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  4157154 gtgtcagtgtctgtgtcgtgtctggtgtccgtgtccgtatccgt 4157111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 20633489 - 20633438
Alignment:
Q  153 gtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    |||||||||||||| |||| || ||||||||||||| |||||||||||||||    
T  20633489 gtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgtgtccgtatccgt 20633438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 29205499 - 29205455
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  29205499 accgacacttgtaattacactgaattatgtgattttttcaaatta 29205455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 35158028 - 35158092
Alignment:
Q  141 aaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgta 205  Q
    ||||||||| ||| |||| ||||||| |||| |||| ||||| ||||| ||||||||||||||||    
T  35158028 aaattattagttgcgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgtccgtatccgta 35158092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 42640647 - 42640546
Alignment:
Q  30 agatctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacatgataccgacacttgtaattatactgaattatgtgac 129  Q
    |||||||||||||||  | |||||||| |||||| ||||  ||||| || |||| ||||     || ||||||||||||||||| ||||||||||||||     
T  42640647 agatctatgaagcacggaaactcctcggattaggcgtgtcctggtgccggacacgtgtcc----gacaccgacacttgtaattacactgaattatgtgat 42640552  T
Q  130 tttttt 135  Q
    ||||||    
T  42640551 tttttt 42640546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 28000738 - 28000787
Alignment:
Q  89 gacatgataccgacacttgtaattatactgaattatgtgacttttttaaa 138  Q
    ||||||| ||||||||||||||||| |||||||||| ||| | |||||||    
T  28000738 gacatgacaccgacacttgtaattacactgaattatatgattattttaaa 28000787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 28964255 - 28964296
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||| |||||||||||||| ||||| ||||||    
T  28964255 gacacttgtaattacactgaattatgtgattttttcaaatta 28964296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 6485615 - 6485659
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  6485615 accgacacttgtaattacactaaattatgtgattttttcaaatta 6485659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 11596360 - 11596400
Alignment:
Q  101 acacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  11596360 acacttgtaattacactgaattatgtgattttttcaaatta 11596400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 12797342 - 12797378
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgactttt 133  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  12797342 accgacacttgtaattacactgaattatgtgattttt 12797378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 12895317 - 12895377
Alignment:
Q  141 aaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatc 201  Q
    ||||||||| |||||||| |||||||||||  ||||||| || ||||| ||| ||||||||    
T  12895317 aaattattatttgtgtcggcgtgtcattgttcgtgtcgtatccggtgtccgtatccgtatc 12895377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 21945558 - 21945514
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||| | ||||| ||||||    
T  21945558 accgacacttgtaattacactgaattatgtcattttttcaaatta 21945514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 49431081 - 49431000
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtc 182  Q
    |||||||||| |||||| |||||||||||||| |||||    | |||||||||  ||||||| ||||||| |||| | ||||||||    
T  49431081 accgacacttttaattacactgaattatgtgatttttt----tcaaattattagctgtgtcggcgtgtcactgtccgagtcgtgtc 49431000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 54580027 - 54580071
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||| |||||| |||||||||||||| ||||| ||||||    
T  54580027 accgacacttataattacactgaattatgtgattttttcaaatta 54580071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 18471414 - 18471276
Alignment:
Q  34 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacatgataccgacacttgtaattatactgaattatgtgactttt 133  Q
    |||||||| ||  ||||||||||||||||| |||||  ||||||| |||| |||||   || ||||||||||||||||||||||||||||||||| ||||    
T  18471414 ctatgaagtacggacactcctcgaattaggtgtgtttcggtgtcggacacgtgtcg---tg-taccgacacttgtaattatactgaattatgtgattttt 18471319  T
Q  134 ttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgt 179  Q
    ||   | |||||||||  |||||||||| ||||||||| |||||||    
T  18471318 tt---tcaaattattagctgtgtcgacgggtcattgtccgtgtcgt 18471276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 47989561 - 47989453
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||||||||||||| |||||||||||||| ||||||||||||      | ||||||||| ||||||| |||||||||||||||||||     
T  47989561 cgacacgacaccgacacttgtaattacactgaattatgtgatttttttaaatta------ttattgtgtcggcgtgtcagtgtctgtgtcgtgtctggta 47989468  T
Q  188 ttcgtgtccgtatcc 202  Q
    | |||||| ||||||    
T  47989467 tccgtgtctgtatcc 47989453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 6612165 - 6612274
Alignment:
Q  87 tcgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggt 186  Q
    |||||| || ||||||||||||||||| |||||||||||| | ||||     | |||||||||| ||| ||| |||||||||||| |||||||||| |||    
T  6612165 tcgacacgacaccgacacttgtaattacactgaattatgtaattttt-----tcaaattattaactgtatcggcgtgtcattgtccgtgtcgtgtccggt 6612259  T
Q  187 gttcgtgtccgtatc 201  Q
    |||||||||||||||    
T  6612260 gttcgtgtccgtatc 6612274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 31694705 - 31694816
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||||   | |||||||||  | ||||||||| ||| ||||  ||||||||| ||||    
T  31694705 cgacacgacaccgacacttgtaattatactgaattatgtgattttttt---tcaaattattagctatgtcgacgtatcagtgtc--tgtcgtgtccggtg 31694799  T
Q  188 ttcgtgtccgtatccgt 204  Q
    | ||| |||||||||||    
T  31694800 tccgtatccgtatccgt 31694816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 5944348 - 5944256
Alignment:
Q  87 tcgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtc 182  Q
    |||||| || |||||||||| |||||| |||||||||||||| ||||||   | |||||||||  |||| || ||||||| |||||||||||||||    
T  5944348 tcgacacgacaccgacacttataattacactgaattatgtgattttttt---tcaaattattagctgtggcggcgtgtcagtgtctgtgtcgtgtc 5944256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 42359453 - 42359555
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||||||| |||||||| ||||| ||||     | |||||||||  ||||||  ||||||| |||| |||| ||||  |||||||||||||    
T  42359453 accgacacttgtaattacactgaattttgtgattttt-----tcaaattattagatgtgtcagcgtgtcagtgtccgtgttgtgtacggtgttcgtgtcc 42359547  T
Q  197 gtatccgt 204  Q
    ||||||||    
T  42359548 gtatccgt 42359555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 28663663 - 28663562
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||||||| |  ||||||||||| ||||||   |||||||||   |||||||| | ||||  |||| |||| |||||||||||||||||||    
T  28663663 accgacacttgtaattacatagaattatgtgattttttttt-ttaaattatcggttgtgtcggcatgtctgtgtccgtgtggtgtctggtgttcgtgtcc 28663565  T
Q  197 gta 199  Q
    |||    
T  28663564 gta 28663562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 1486646 - 1486757
Alignment:
Q  36 atgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcg------acatgataccgacacttgtaattatactgaattatgtgac 129  Q
    |||||||||| |||||||||| |||||| ||||   ||||||| |||| |||||      ||| || |||||||||| |||||| ||||||||||||||     
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgat 1486745  T
Q  130 ttttttaaatta 141  Q
    ||||| ||||||    
T  1486746 tttttcaaatta 1486757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 18337384 - 18337340
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  18337384 accgacacttgtaattacactgaattatgtgattttttcaaatta 18337340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 24577190 - 24577234
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  24577190 accgacacttgtaattacactgaattatgtgattttttcaaatta 24577234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 38078600 - 38078762
Alignment:
Q  33 tctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacat-gataccgacacttgtaattatactgaattatgtgactt 131  Q
    |||||||||||| || |||||||| |||||| ||||  |||||| |||||  |||||     || ||||||||||||||||| | |||||||||||| ||    
T  38078600 tctatgaagcacgaatactcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgattt 38078699  T
Q  132 ttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    ||     | |||||||||  ||||||||||||||| |||     ||||||| ||||| |||||||||||||||    
T  38078700 tt-----tcaaattattagctgtgtcgacgtgtcagtgt-----tcgtgtccggtgtccgtgtccgtatccgt 38078762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 40258937 - 40258981
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  40258937 accgacacttgtaattacactgaattatgtgattttttcaaatta 40258981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 9103656 - 9103593
Alignment:
Q  141 aaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    |||||||||| ||||||| ||||||| |||| | ||| |||| ||||||||||||| |||||||    
T  9103656 aaattattaactgtgtcggcgtgtcagtgtccgagtcctgtcaggtgttcgtgtccatatccgt 9103593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 48040465 - 48040569
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||| ||| ||| || |||||||| ||||    | |||||||||  ||||||| ||||||| |||| |||||||||| ||||| ||| |||    
T  48040465 accgacacttgtatttacactaaaatatgtgacctttt----tcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatcc 48040560  T
Q  197 gtatccgta 205  Q
     ||||||||    
T  48040561 atatccgta 48040569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 1704933 - 1705040
Alignment:
Q  32 atctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacatgataccgacacttgtaattatactgaattatgtgactt 131  Q
    ||||||||||||   |||||||| | |||||| ||||   ||||||| ||||  || |||| || |||||||||||||||||  ||||||||||||| ||    
T  1704933 atctatgaagcatggacactccttggattaggcgtgtctcggtgtcggacac--gttgacacgacaccgacacttgtaattaccctgaattatgtgattt 1705030  T
Q  132 ttttaaatta 141  Q
    ||| ||||||    
T  1705031 tttcaaatta 1705040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 1815312 - 1815270
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaat 139  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||    
T  1815312 accgacacttgtaattacactgaattatgtgattttttaaaat 1815270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 51410080 - 51410042
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgactttttt 135  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  51410080 accgacacttgtaattacactgaattatgtgattttttt 51410042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 113363 - 113310
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||| || ||| ||||||||||||| |||||||||||||| ||||| ||||||    
T  113363 cgacacgacacctacacttgtaattacactgaattatgtgattttttcaaatta 113310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 32434723 - 32434764
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||| | |||||||||||||||||| ||||||    
T  32434723 gacacttgtaattacaatgaattatgtgactttttcaaatta 32434764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 10577789 - 10577841
Alignment:
Q  152 tgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    ||||||| ||||||  |||| |||||||||| ||||| |||||||||||||||    
T  10577789 tgtgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatccgt 10577841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 19058860 - 19058904
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||| |  |||||||||||    
T  19058860 accgacacttgtaattacactgaattatgttatctttttaaatta 19058904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 22515891 - 22515935
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  22515891 accgacacttgtaattacactaaattatgtgattttttcaaatta 22515935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 22881620 - 22881664
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  22881620 accgacacttgtaattacactaaattatgtgattttttcaaatta 22881664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 48548016 - 48548068
Alignment:
Q  152 tgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    ||||||| |||||||||||| || | ||||| ||||| |||||||||||||||    
T  48548016 tgtgtcggcgtgtcattgtccgtattgtgtccggtgtccgtgtccgtatccgt 48548068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 46737 - 46635
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||| ||||||||| |||||||||||||| ||||     | |||||||||| ||||||| |||||||||||| |||||||||| | ||| |||||||    
T  46737 accgacatttgtaattacactgaattatgtgattttt-----tcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccgatgtccgtgtcc 46643  T
Q  197 gtatccgt 204  Q
    ||||||||    
T  46642 gtatccgt 46635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 16000020 - 16000122
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||| ||| |||||||||||| | ||||     ||||||||||| |||||||| ||||||| ||||||||||||||  ||||| |||||||    
T  16000020 accgacacttgtagttacactgaattatgttattttt-----ttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtgtcc 16000114  T
Q  197 gtatccgt 204  Q
    ||||||||    
T  16000115 gtatccgt 16000122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 15796298 - 15796400
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||| ||||||||| |||||||||| ||| ||||| ||||||     |||| ||||||| |||||||||||| |||||||||| ||||| |||||||    
T  15796298 accgacaattgtaattacactgaattatatgattttttcaaatta-----ttaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtcc 15796392  T
Q  197 gtatccgt 204  Q
     |||||||    
T  15796393 atatccgt 15796400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 10335290 - 10335392
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||| ||| ||| || ||||||||||||     | ||||||||| |||||||| ||||||| |||| |||||||||| ||||| ||||| |    
T  10335290 accgacacttgtatttacactaaaatatgtgactttt-----tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttc 10335384  T
Q  197 gtatccgt 204  Q
    ||||||||    
T  10335385 gtatccgt 10335392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 21256987 - 21257034
Alignment:
Q  94 gataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  21256987 gataccgacacttgtaattatactgaattatgtgattttttcaaatta 21257034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 3164068 - 3164131
Alignment:
Q  141 aaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    |||||||||  |||||||||||| ||||||| |||||||||| ||||| |||||| ||||||||    
T  3164068 aaattattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgtgtctgtatccgt 3164131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 14216944 - 14216865
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctg 184  Q
    |||||||||||||| |||||||||| ||| | |||||    ||||||||| |||||||||||||||| |||| ||||||||||||    
T  14216944 gacacttgtaattacactgaattatatga-tatttta----aaattattagttgtgtcgacgtgtcagtgtccgtgtcgtgtctg 14216865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 14223073 - 14222994
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctg 184  Q
    |||||||||||||| |||||||||| ||| | |||||    ||||||||| |||||||||||||||| |||| ||||||||||||    
T  14223073 gacacttgtaattacactgaattatatga-tatttta----aaattattagttgtgtcgacgtgtcagtgtccgtgtcgtgtctg 14222994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 3610686 - 3610597
Alignment:
Q  99 cgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtg 193  Q
    ||||||| ||||||| ||||| |||||| | ||||||||     |||||||| ||||| | ||||||| ||||||||||||||| ||||||||||    
T  3610686 cgacactggtaattacactgagttatgttatttttttaa-----attattaactgtgttggcgtgtcagtgtctgtgtcgtgtccggtgttcgtg 3610597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 3865729 - 3865692
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttt 134  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3865729 accgacacttgtaattatactgaattatgtgagttttt 3865692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 8593192 - 8593155
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttt 134  Q
    |||||||||||||||||||||||||||||||| |||||    
T  8593192 accgacacttgtaattatactgaattatgtgatttttt 8593155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 51512244 - 51512281
Alignment:
Q  168 tgtctgtgtcgtgtctggtgttcgtgtccgtatccgta 205  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  51512244 tgtctgtgtcgtgtctgatgttcgtgtccgtatccgta 51512281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 750661 - 750725
Alignment:
Q  141 aaattattaattgtgtcgacgtgtcat-tgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    ||||||||| |||||||| |||||||  |||| |||||||||| ||||| |||||||||||||||    
T  750661 aaattattagttgtgtcgccgtgtcaagtgtccgtgtcgtgtccggtgtccgtgtccgtatccgt 750725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 26508165 - 26508121
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  26508165 accgacacttgtaattacactgaattatgtgattttttcaaatta 26508121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 28918056 - 28918012
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  28918056 accgacacttgtaattacactgaattatgtgattttttcaaatta 28918012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 35312108 - 35312029
Alignment:
Q  98 ccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtc 182  Q
    |||||||||||||||| |||||||||||| || |||||||     |||||||| ||||||||| | ||| |||| ||||||||||    
T  35312108 ccgacacttgtaattacactgaattatgtaacatttttaa-----attattaaatgtgtcgacatatcagtgtccgtgtcgtgtc 35312029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 39756291 - 39756247
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||    
T  39756291 accgacacttgtaattatattaaattatgtgatttttttaaatta 39756247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 11610573 - 11610532
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||| || |||||||||||||| ||||||||||||    
T  11610573 gacacttgtaactacactgaattatgtgatttttttaaatta 11610532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 14209165 - 14209124
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||| |||||||||||||| ||||| ||||||    
T  14209165 gacacttgtaattacactgaattatgtgattttttaaaatta 14209124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 41961645 - 41961745
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||||||||||||| || |||| ||||||  |||     | ||||||||| ||||| || ||||||| ||||||||||||||| ||||    
T  41961645 cgacacgacaccgacacttgtaattacaccgaataatgtgatattt-----tcaaattattagttgtgacggcgtgtcagtgtctgtgtcgtgtccggtg 41961739  T
Q  188 ttcgtg 193  Q
    | ||||    
T  41961740 tccgtg 41961745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 49651781 - 49651834
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||| || ||||||||||||||||| | |||||||||||| ||||| ||||||    
T  49651781 cgacacgacaccgacacttgtaattacagtgaattatgtgattttttcaaatta 49651834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 1509594 - 1509550
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  1509594 accgacacttgtaattacactaaattatgtgattttttcaaatta 1509550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 4987299 - 4987339
Alignment:
Q  101 acacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  4987299 acacttgtaattacactgaattatgtgattttttcaaatta 4987339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 8587025 - 8587069
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  8587025 accgacacttgtaattacacttaattatgtgattttttcaaatta 8587069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 10955007 - 10954963
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||| |||| |||||||||||||| ||||| ||||||    
T  10955007 accgacacttgtgattacactgaattatgtgattttttcaaatta 10954963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 20503520 - 20503476
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||| | ||||| ||||||    
T  20503520 accgacacttgtaattacactgaattatgtcattttttcaaatta 20503476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 22774065 - 22774109
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttt 132  Q
    |||||||| |||||||||| |||||| |||||| |||||||||||    
T  22774065 cgacatgacaccgacacttataattacactgaaatatgtgacttt 22774109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 34185127 - 34185171
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  34185127 accgacacttgtaattacactgaattgtgtgattttttgaaatta 34185171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 34910372 - 34910328
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||| |||||||||| |||||||||||||| ||||| ||||||    
T  34910372 accgactcttgtaattacactgaattatgtgattttttcaaatta 34910328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 51206357 - 51206401
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||||||    
T  51206357 accgacacttgtatttacactgaattatgtgattttttcaaatta 51206401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 55401130 - 55401086
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  55401130 accgacacttgtaattacactaaattatgtgattttttcaaatta 55401086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 22652040 - 22651927
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||||||||||||||| |||||||||||| ||||| ||||||     |||  ||||||| ||||||| |||| |||||||||| ||||    
T  22652040 cgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaatta-----ttagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 22651946  T
Q  188 ttcgtgtccgtatccgtac 206  Q
    |  ||||||||||||||||    
T  22651945 tcagtgtccgtatccgtac 22651927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 24858064 - 24857962
Alignment:
Q  99 cgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgt 198  Q
    ||||||||||| ||| |||||||||||||| ||||||   | |||||||||| ||||||| ||||||  |||| |||||||||| |||||||||||||||    
T  24858064 cgacacttgta-ttacactgaattatgtgatttttttt--tcaaattattaactgtgtcggcgtgtccatgtccgtgtcgtgtccggtgttcgtgtccgt 24857968  T
Q  199 atccgt 204  Q
    ||||||    
T  24857967 atccgt 24857962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 29510308 - 29510410
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    |||||||||||||||||||||||||| ||||| ||||     | |||||||||  ||||||| ||||||| |||| |||||||||| ||||| | ||||     
T  29510308 accgacacttgtaattatactgaattttgtgattttt-----tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccatgtca 29510402  T
Q  197 gtatccgt 204  Q
    ||||||||    
T  29510403 gtatccgt 29510410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 8343086 - 8342983
Alignment:
Q  34 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacatgataccgacacttgtaattatactgaattatgtgactttt 133  Q
    |||||||||||| |||||| ||| |||||| ||||   ||||||| ||||||||    | || ||||||||||||||||| ||| |||||||||| ||||    
T  8343086 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacatgt----acgacaccgacacttgtaattacactaaattatgtgattttt 8342991  T
Q  134 ttaaatta 141  Q
    | ||||||    
T  8342990 tcaaatta 8342983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 2572060 - 2572160
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||||||| ||| |||||||||| ||||     | |||||||||  ||||||||||||||  | || ||||||||||  |||| |||||||    
T  2572060 accgacacttgtaattacactaaattatgtgattttt-----tcaaattattaggtgtgtcgacgtgtcggtatccgtgtcgtgtccagtgtccgtgtcc 2572154  T
Q  197 gtatcc 202  Q
    ||||||    
T  2572155 gtatcc 2572160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 4948707 - 4948663
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  4948707 accgacacttgtaattacactgaattatgtgattttttcaaatta 4948663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 25192351 - 25192395
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||||    
T  25192351 accgacacttataattatactgaattatgtcactttttcaaatta 25192395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 25566896 - 25566852
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  25566896 accgacacttgtaattacactgaattatgtgattttttcaaatta 25566852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 18407772 - 18407730
Alignment:
Q  99 cgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||| |||||||||||||| |||||| |||||    
T  18407772 cgacacttgtaattacactgaattatgtgatttttttgaatta 18407730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 24413624 - 24413666
Alignment:
Q  162 tgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    ||||| |||| |||||||||||||||| |||||||||||||||    
T  24413624 tgtcagtgtccgtgtcgtgtctggtgtccgtgtccgtatccgt 24413666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 4673468 - 4673528
Alignment:
Q  141 aaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatc 201  Q
    |||||||||  ||||||| ||||||| ||||||||||||||| | ||| ||| ||||||||    
T  4673468 aaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtatccgtatc 4673528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 18964167 - 18964127
Alignment:
Q  161 gtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatc 201  Q
    |||||| |||| |||||||||||||||| ||||||||||||    
T  18964167 gtgtcagtgtccgtgtcgtgtctggtgtccgtgtccgtatc 18964127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 20873124 - 20873080
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  20873124 accgacacttgtaattacactaaattatgtgattttttcaaatta 20873080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 22596045 - 22596005
Alignment:
Q  101 acacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||| |||||||||||| | ||||||||||||    
T  22596045 acacttgtaattacactgaattatgttatttttttaaatta 22596005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 40332246 - 40332202
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||| | ||||||    
T  40332246 accgacacttgtaattacactgaattatgtgattttctcaaatta 40332202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 19536401 - 19536488
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgt 188  Q
    ||||||||||||||||| |||||||||||||| |||||| ||    ||||||| |||||||| |||||||||||| |||||||||| |||||    
T  19536401 accgacacttgtaattacactgaattatgtgatttttttcaa----attattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgt 19536488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 23058437 - 23058549
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||||||||||||| |||| ||||||||| |||||| ||    |||||||||||||| | ||||||| |||| |||||||||| |||     
T  23058437 cgacacgacaccgacacttgtaattacactggattatgtgatttttttcaa----attattaattgtgtgggcgtgtcactgtccgtgtcgtgtcaggta 23058532  T
Q  188 ttcgtgtccgtatccgt 204  Q
    | ||||||||| |||||    
T  23058533 tccgtgtccgtgtccgt 23058549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 36756387 - 36756447
Alignment:
Q  141 aaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatc 201  Q
    ||||||||| |||||||||||||||| |||||||||||| || | ||||||||||||||||    
T  36756387 aaattattagttgtgtcgacgtgtcagtgtctgtgtcgtatccgatgttcgtgtccgtatc 36756447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 29367281 - 29367379
Alignment:
Q  32 atctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgt--cgacatgataccgacacttgtaattatactgaattatgtga 128  Q
    |||||||||||||||||| |||||| ||||||  |||   ||||||| ||||||||  ||||| |||||||||| ||||||||| ||| ||||||||||    
T  29367281 atctatgaagcacaaacattcctcggattaggcatgtctcggtgtcggacacatgtaccgacacgataccgacatttgtaattacactaaattatgtga 29367379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 18422018 - 18421941
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgt 179  Q
    ||||||||||||||||| ||||||||||||||  |||||||     |||||||||||||||| ||||||| |||| |||||||    
T  18422018 accgacacttgtaattacactgaattatgtgatatttttaa-----attattaattgtgtcggcgtgtcagtgtccgtgtcgt 18421941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 15972928 - 15972825
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||||||| |||||||| ||| | ||||     | |||||||||||||||||| ||||||| |||| ||||||| ||||||||  |||||     
T  15972928 accgacacttgtaattacactgaattgtgtaattttt-----tcaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatctggtgtctgtgtct 15972834  T
Q  197 gtatccgta 205  Q
    || ||||||    
T  15972833 gtgtccgta 15972825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 21624322 - 21624242
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgt 181  Q
    ||||||||||||||||| |||||||||||  | |||||||    |||||||||  ||||||| ||||||| ||||||||||||||    
T  21624322 accgacacttgtaattacactgaattatgctattttttta----aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgt 21624242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 20473375 - 20473295
Alignment:
Q  99 cgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctg 184  Q
    ||||||||||||||| |||||||||| ||| ||||||||     ||||||| |||||||| | ||||| ||||||||||| |||||    
T  20473375 cgacacttgtaattacactgaattatatgagttttttaa-----attattagttgtgtcggcatgtcagtgtctgtgtcgagtctg 20473295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 2438723 - 2438767
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  2438723 accgacacttgtaattacactgaattatgtgattttttgaaatta 2438767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 6940313 - 6940266
Alignment:
Q  94 gataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||||||||| ||| |||||||| ||||||| ||||||    
T  6940313 gataccgacacttgtaattacacttaattatgtaactttttaaaatta 6940266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 30404855 - 30404898
Alignment:
Q  98 ccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||||| |||||||||||||| ||||| ||||||    
T  30404855 ccgacacttgtaattacactgaattatgtgattttttcaaatta 30404898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 33153476 - 33153437
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaat 139  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  33153476 gacacttgtaattacactgaattatgtgatttttttaaat 33153437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 30717536 - 30717578
Alignment:
Q  99 cgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||    
T  30717536 cgacacttgtaattacactgaattatgtgattttttcaaatta 30717578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 38442362 - 38442320
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaat 139  Q
    |||||||||| |||||||| |||||||||||| ||||||||||    
T  38442362 accgacacttataattatattgaattatgtgatttttttaaat 38442320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 11223860 - 11223896
Alignment:
Q  90 acatgataccgacacttgtaattatactgaattatgt 126  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  11223860 acatgacaccgacacttgtaattacactgaattatgt 11223896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 26769506 - 26769470
Alignment:
Q  168 tgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  26769506 tgtctgtgtcgtgtccggtgtccgtgtccgtatccgt 26769470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 29367381 - 29367446
Alignment:
Q  105 ttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgt 174  Q
    ||||||||| |||||||||||||| |||||||    ||||||||||||||| || ||||||  |||||||    
T  29367381 ttgtaattacactgaattatgtgattttttta----aaattattaattgtgccggcgtgtccgtgtctgt 29367446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 130537 - 130437
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||||||| |||||||||||||| ||||| ||| ||     |||| ||||||| | |||||||||| |||||||||| ||||| |||||||    
T  130537 accgacacttgtaattacactgaattatgtgattttttcaaacta-----ttaactgtgtcggcttgtcattgtccgtgtcgtgtccggtgtccgtgtcc 130443  T
Q  197 gtatcc 202  Q
    ||||||    
T  130442 gtatcc 130437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 13557750 - 13557847
Alignment:
Q  102 cacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatc 201  Q
    |||||||||||| |||||||||||||| ||||||   ||||||||||| || ||||| ||||||| |||||||||| |||| ||||| |||||| |||||    
T  13557750 cacttgtaattacactgaattatgtgatttttttt--ttaaattattagttttgtcggcgtgtcagtgtctgtgtcatgtccggtgtccgtgtctgtatc 13557847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 24339706 - 24339596
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||||||||||||| |||||||||||||| ||||     | |||||||||  ||||||| ||||||| ||||  ||||||||| ||||    
T  24339706 cgacacgacaccgacacttgtaattacactgaattatgtgattttt-----tcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtg 24339612  T
Q  188 ttcgtgtccgtatccg 203  Q
    | ||| ||||||||||    
T  24339611 tccgtatccgtatccg 24339596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 9778564 - 9778511
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||| ||||||    
T  9778564 cgacacgacaccgacacttgtaattatactgaattatgtgattttttcaaatta 9778511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 3991379 - 3991335
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||    
T  3991379 accgacacttgtaattatactgaattatgtgattttttcaaatta 3991335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 11061080 - 11061182
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||||||||||| |||||||||| ||||     | |||||||||  |||||||  |||||| |||| ||||||| || | ||| |||||||    
T  11061080 accgacacttgtaattatactaaattatgtgattttt-----tcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccgatgtccgtgtcc 11061174  T
Q  197 gtatccgt 204  Q
    ||||||||    
T  11061175 gtatccgt 11061182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 7438770 - 7438717
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||| ||||||||||||||||| | |||||||||||| ||||| ||||||    
T  7438770 cgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaatta 7438717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 26033456 - 26033509
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||| || ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  26033456 cgacacgagaccgacacttgtaattacactgaattatgtgattttttcaaatta 26033509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 18039063 - 18038994
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgactttttt-aaattaaattattaattgtgtcg 158  Q
    ||||| || ||||||||||||||||| |||||||||||||| |||||| |||||  ||||||| ||||||||    
T  18039063 cgacacgacaccgacacttgtaattacactgaattatgtgatttttttcaaatt--attattagttgtgtcg 18038994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 18213082 - 18213137
Alignment:
Q  146 attaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatc 201  Q
    |||| |||||||| ||| ||| |||| |||||||||||||||||||||| ||||||    
T  18213082 attagttgtgtcggcgtatcagtgtccgtgtcgtgtctggtgttcgtgttcgtatc 18213137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 25481953 - 25481855
Alignment:
Q  101 acacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtat 200  Q
    ||||||||||||| |||||||||||||| ||||     | |||||||||  ||||||| ||||||||||||  ||| ||||| | ||| |||||| ||||    
T  25481953 acacttgtaattacactgaattatgtgattttt-----tcaaattattagctgtgtcggcgtgtcattgtccatgttgtgtccgatgtccgtgtctgtat 25481859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 5409771 - 5409884
Alignment:
Q  34 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcg------acatgataccgacacttgtaattatactgaattatgtg 127  Q
    |||||||||||  |||||||||| |||||| ||||   ||||||| |||| |||||      ||| || ||||||||||||||||  |||||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttgtaattgcactgaattatgtg 5409870  T
Q  128 acttttttaaatta 141  Q
    | ||||| ||||||    
T  5409871 attttttcaaatta 5409884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 13770744 - 13770702
Alignment:
Q  99 cgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||| |||||||||||| | ||||||||||||    
T  13770744 cgacacttgtaattacactgaattatgtaatttttttaaatta 13770702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 21560558 - 21560520
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgactttttt 135  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  21560558 accgacacttgtaattacactgaattatgtgattttttt 21560520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 11665435 - 11665488
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||| | |||||||| |||||| |||||||||||||| ||||| ||||||    
T  11665435 cgacatgacatcgacacttataattagactgaattatgtgattttttcaaatta 11665488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 21141023 - 21141088
Alignment:
Q  139 ttaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    ||||||||||| | |||||||||||||   ||| |||||||||  ||||| |||||||||||||||    
T  21141023 ttaaattattagtggtgtcgacgtgtcggcgtccgtgtcgtgtacggtgtccgtgtccgtatccgt 21141088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 32094015 - 32094121
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||| ||||||||| |||||||||||||| |||||    | ||||||||| |||||| | | ||| | ||| |||||||||||| |||    
T  32094015 cgacacgacaccgacatttgtaattacactgaattatgtgatttttt----tcaaattattagttgtgttggcatgttagtgtttgtgtcgtgtcttgtg 32094110  T
Q  188 ttcgtgtccgt 198  Q
    | ||| |||||    
T  32094111 tccgtatccgt 32094121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 2334314 - 2334239
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtca 166  Q
    ||||| || ||||||||||||||||| ||| |||||||||| ||||||   | |||||||||| | ||||| |||||||    
T  2334314 cgacacgacaccgacacttgtaattacactaaattatgtgattttttt---tcaaattattaactttgtcgccgtgtca 2334239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 6028626 - 6028582
Alignment:
Q  156 tcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtat 200  Q
    |||| |||||| ||||||||||||||||| ||| |||||||||||    
T  6028626 tcgatgtgtcagtgtctgtgtcgtgtctgatgtccgtgtccgtat 6028582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 9408338 - 9408382
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  9408338 accgacacttgtaattacactaaattatgtgattttttcaaatta 9408382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 30731041 - 30730993
Alignment:
Q  153 gtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatc 201  Q
    |||||| |||| || ||| ||||||||||||||||| ||||||||||||    
T  30731041 gtgtcggcgtgccactgtatgtgtcgtgtctggtgtccgtgtccgtatc 30730993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 33994267 - 33994223
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||  ||||||||||||||| |||| ||||||    
T  33994267 accgacacttgtaattgcactgaattatgtgaccttttcaaatta 33994223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 48246868 - 48246896
Alignment:
Q  153 gtgtcgacgtgtcattgtctgtgtcgtgt 181  Q
    |||||||||||||||||||||||||||||    
T  48246868 gtgtcgacgtgtcattgtctgtgtcgtgt 48246896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 34595189 - 34595098
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtg 193  Q
    ||||||||||||||||| |||||||||||||| ||||     | ||||||||| |||||||| |||||||||||| |||||||||| ||||| ||||    
T  34595189 accgacacttgtaattacactgaattatgtgattttt-----tcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 34595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 16766761 - 16766652
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||||||||||||| |||||||||||||| ||||     | |||||||||  ||||||| ||||||| ||||  ||||||||| ||||    
T  16766761 cgacacgacaccgacacttgtaattacactgaattatgtgattttt-----tcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtg 16766667  T
Q  188 ttcgtgtccgtatcc 202  Q
    | |||||||||||||    
T  16766666 tccgtgtccgtatcc 16766652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 8776981 - 8777079
Alignment:
Q  101 acacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtat 200  Q
    ||||||||||||| |||||||| ||||| ||||     | ||||||||| |||||||| ||||||| |||| |||||||||| | ||| |||||||||||    
T  8776981 acacttgtaattacactgaattttgtgattttt-----tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtat 8777075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 8365514 - 8365619
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||||||||||||| || |||||||||||  |||     | ||||||||| |||||||| ||||||| |||| |||||||||||||||    
T  8365514 cgacacgacaccgacacttgtaattacaccgaattatgtgatattt-----tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtg 8365608  T
Q  188 ttcgtgtccgt 198  Q
    | ||| |||||    
T  8365609 tccgtatccgt 8365619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 16833363 - 16833283
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtc 182  Q
    ||||||||||||||||| |||||| ||||||| ||||     | ||||||||| |||||||| ||||||| |||||||||||||||    
T  16833363 accgacacttgtaattacactgaagtatgtgattttt-----tcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtc 16833283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 9107365 - 9107476
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtg 187  Q
    ||||| || ||||||||||||||||| |||||||| ||||| ||||     | |||||||||  ||||||| ||||| | |||| |||||||||| ||||    
T  9107365 cgacacgacaccgacacttgtaattacactgaattttgtgattttt-----tcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtg 9107459  T
Q  188 ttcgtgtccgtatccgt 204  Q
    | |||||| ||||||||    
T  9107460 tccgtgtcagtatccgt 9107476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 9522946 - 9522902
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  9522946 accgacacttgtaattacactgaattatgtgatttttttaaatta 9522902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 24645600 - 24645464
Alignment:
Q  34 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgaca-tgataccgacacttgtaattatactgaattatgtgacttt 132  Q
    |||||||||||| |||||| ||| |||||  ||||  |||||||| |||| |||||    ||| |||||||||||||| ||||||||||||||||| |||    
T  24645600 ctatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaattatgtgatttt 24645501  T
Q  133 tttaaattaaattattaattgtgtcgacgtgtcattgtctg 173  Q
    ||    | |||||||||  ||||||||| ||||| ||||||    
T  24645500 tt----tcaaattattagctgtgtcgacatgtcagtgtctg 24645464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 4877998 - 4877960
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgactttttt 135  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  4877998 accgacacttgtaattatacttaattatgtgactttttt 4877960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 426518 - 426618
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtcc 196  Q
    ||||||||||||||||| | | |||||||||| ||||     | |||||||||| ||||||| ||||||| |||| |||||||||| ||| | ||||||     
T  426518 accgacacttgtaattacatttaattatgtgattttt-----tcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtct 426612  T
Q  197 gtatcc 202  Q
    ||||||    
T  426613 gtatcc 426618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 24353186 - 24353133
Alignment:
Q  147 ttaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtat 200  Q
    |||||||||||| ||||||  ||| ||||||||||||||||| |||||||||||    
T  24353186 ttaattgtgtcggcgtgtctgtgtttgtgtcgtgtctggtgtccgtgtccgtat 24353133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 10770678 - 10770722
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  10770678 accgacacttgtaattacactgaattatgtgattttttcaaatta 10770722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 28715414 - 28715306
Alignment:
Q  34 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacat-gataccgacacttgtaattatactgaattatgtgacttt 132  Q
    |||||||||||  ||||| ||||||||||| ||||   |||||||||||| |||||     || ||||||||||||||||| |||||||||||| | |||    
T  28715414 ctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcatttt 28715315  T
Q  133 tttaaatta 141  Q
    || ||||||    
T  28715314 ttcaaatta 28715306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 7938132 - 7938069
Alignment:
Q  141 aaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgt 204  Q
    |||||||||  ||||||| ||||||| ||||  ||||||||| ||||| |||||||||||||||    
T  7938132 aaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccgt 7938069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 7930413 - 7930316
Alignment:
Q  41 gcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatt 140  Q
    |||| |||||||||||||||||| ||||  |||||||| |||| |   |||| || ||||||||||| ||||  ||| |||||||||| ||||| |||||    
T  7930413 gcacgaacactcctcgaattaggcgtgtcctggtgtcggacacgt---gacacgacaccgacacttgaaatttcactaaattatgtgattttttcaaatt 7930317  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 1681811 - 1681711
Alignment:
Q  99 cgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgt 198  Q
    ||||||||||||||| ||||||||| |||| ||||     | ||||||||| |||||||| ||||| | ||| ||||||||||  |||||  ||||| ||    
T  1681811 cgacacttgtaattacactgaattacgtgattttt-----tcaaattattagttgtgtcggcgtgttagtgtatgtgtcgtgttcggtgtctgtgtctgt 1681717  T
Q  199 atccgt 204  Q
    ||||||    
T  1681716 atccgt 1681711  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 9911532 - 9911577
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgactt-ttttaaatta 141  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||    
T  9911532 accgacacttgtaattacactgaattatgtgatttcttttaaatta 9911577  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 31384972 - 31384931
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||| |||||||||||||| ||||| ||||||    
T  31384972 gacacttgtaattacactgaattatgtgattttttcaaatta 31384931  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 1700407 - 1700363
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||| |||||| |||||| ||||||| ||||||||||||    
T  1700407 accgacacttataattacactgaaatatgtgatttttttaaatta 1700363  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 7801160 - 7801204
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||||||  ||||||||||||| ||||| ||||||    
T  7801160 accgacacttgtaattacgctgaattatgtgattttttcaaatta 7801204  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 7977834 - 7977878
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||||||| | ||||| ||||||    
T  7977834 accgacacttgtaattacactgaattatgtaattttttcaaatta 7977878  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 8714044 - 8713971
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtc 165  Q
    ||||| || ||| ||| ||||||||| |||||||||||||| |||||    | |||||||||| ||||||||||||||    
T  8714044 cgacacgacacccacatttgtaattacactgaattatgtgatttttt----tcaaattattaactgtgtcgacgtgtc 8713971  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 18252747 - 18252799
Alignment:
Q  89 gacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||| ||||||||||| |||||||| ||| |||||||| | ||||||||||||    
T  18252747 gacacgataccgacacctgtaattacactaaattatgtcatttttttaaatta 18252799  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 28152153 - 28152117
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgactttt 133  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  28152153 accgacacttgtaattacactgaattatgtgattttt 28152117  T

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Target: scaffold0223 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 20224 - 20141
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgt 188  Q
    |||||||||||||| |||||||||||||| ||||     | |||||||||  ||||||| |||||||||||| |||||||||| |||||    
T  20224 gacacttgtaattacactgaattatgtgattttt-----tcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgt 20141  T

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Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 45534 - 45615
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtc 182  Q
    ||||||||||||||||| |||||||||||| | ||||||   ||| || ||||||||||||||||||||| |||| |||| |||||    
T  45534 accgacacttgtaattacactgaattatgt-attttttt---ttagataattaattgtgtcgacgtgtcagtgtccgtgttgtgtc 45615  T

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Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 3856 - 3897
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  3856 gacacttgtaattacactgaattatgtgatttttttaaatta 3897  T

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Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 8814 - 8753
Alignment:
Q  141 aaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatcc 202  Q
    |||||||||  ||||||| ||||||| |||| |||||||||| ||||| |||||||||||||    
T  8814 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 8753  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 178813 - 178909
Alignment:
Q  88 cgacatgataccgacacttgtaattatactgaattatg-tgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtctggt 186  Q
    |||||||| || |||||||||||||| ||||||||||| ||| ||||     | ||||||||| |||||||| ||||||| |||| |||||||||| |||    
T  178813 cgacatgacactgacacttgtaattacactgaattatgatgattttt-----tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggt 178907  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 23825 - 23787
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgactttttt 135  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  23825 accgacacttgtaattacactgaattatgtgattttttt 23787  T

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Target: scaffold0227 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 15052 - 15007
Alignment:
Q  160 cgtgtcattgtctgtgtcgtgtctggtgttcgtgtccgtatccgta 205  Q
    ||||||| |||| |||||||||||||||| ||||||||| ||||||    
T  15052 cgtgtcagtgtccgtgtcgtgtctggtgtccgtgtccgtgtccgta 15007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 23563 - 23485
Alignment:
Q  100 gacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtgtcgtgtc 182  Q
    ||||||| |||||| |||||||||||||| |||||    |||| ||||||| |||||||  |||||| ||| |||||||||||    
T  23563 gacacttataattacactgaattatgtgatttttt----ttaagttattaactgtgtcggtgtgtcagtgtatgtgtcgtgtc 23485  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 466 - 510
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  466 accgacacttgtaattacactgaattttgtgattttttcaaatta 510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 31449 - 31485
Alignment:
Q  161 gtgtcattgtctgtgtcgtgtctggtgttcgtgtccg 197  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  31449 gtgtcagtgtatgtgtcgtgtctggtgttcgtgtccg 31485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 51862 - 51822
Alignment:
Q  101 acacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  51862 acacttgtaattacactgaattatgtgattttttcaaatta 51822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 17753 - 17797
Alignment:
Q  97 accgacacttgtaattatactgaattatgtgacttttttaaatta 141  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  17753 accgacacttgtaattacactaaattatgtgattttttcaaatta 17797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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