View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_low_6 (Length: 497)
Name: NF6776_low_6
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 125 - 495
Target Start/End: Complemental strand, 40152168 - 40151790
Alignment:
| Q |
125 |
gactaattataacttttaacataaatagatcaatattaaacttattcatgatagatcacaccatatcaaccattgaannnnnnnaattctcttgaatcct |
224 |
Q |
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| T |
40152168 |
gactaagtatgacttttaacataaatagattgatattaaacttattcatgatagatcacgccatatcaacaattgaatttttttaattctattgaatcct |
40152069 |
T |
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| Q |
225 |
atcatgtctctcctacactagaattattaatattatcttcaatcaaagaactaatgtaatcaacaccaattctattatcacttgatgaaaatgtagcaga |
324 |
Q |
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| T |
40152068 |
atcatgtctctcctacactagaattattaatattaccttcaatcaaagaactaatgtaatcaacaccaatttcattatcacttgatgaaaatgtagcaga |
40151969 |
T |
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| Q |
325 |
gattagt--------attttgaaaacctctaaaaccatcatatttttgaatcagtcttttgaggtttagcaactgaatcaagactagaagattgattgga |
416 |
Q |
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| T |
40151968 |
gattagttaggaagtattttaaaaacctctaaaaccatcatatttttgaatcagtcttttgaggtttagcaactgaatcaagactagaagattgattgga |
40151869 |
T |
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| Q |
417 |
tccaaaacaagtcaatgattaaaattatttttgtttttataactaatcaaaatttcactaccaaatgcaacaacaccaa |
495 |
Q |
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| T |
40151868 |
tccaaaacaagtcaatgattaaaataatttttgttttgttaactaatcaaaattccactaccaaatgcaacaacaccaa |
40151790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 40152273 - 40152203
Alignment:
| Q |
20 |
actcggtccactatgagttgagtcatcccaaaaatgtcaagacatttaatattttcttttctttttcttac |
90 |
Q |
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| T |
40152273 |
actcggtccactatgagttgagtcatcccaaaaatgtcaagacatttaatattttcttttctttttcttac |
40152203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 49899014 - 49898943
Alignment:
| Q |
363 |
tgaatcagtcttttgaggtttagcaactgaatcaagactagaagattgattggatccaaaacaagtcaatga |
434 |
Q |
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| T |
49899014 |
tgaatcaatctttgaaggtttagcagctgaattaagactagaagatggcttagatccaaaaccagccaatga |
49898943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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