View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_low_7 (Length: 495)
Name: NF6776_low_7
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 190 - 480
Target Start/End: Complemental strand, 46809673 - 46809383
Alignment:
| Q |
190 |
agtatatttgcatagatggccttcagcgtaaatgagctacggttcctagtttcatcttcttcctatagatttttcatagaattatacaatgacagcacat |
289 |
Q |
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| T |
46809673 |
agtatatttgcatagatggccttcagcgtaaatgagctacggttcctagtttcatcttcttcctatagatttttcatagaattatacaatgacagcacgt |
46809574 |
T |
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| Q |
290 |
atattaagttaataacacagtgataataaaggttaaataaaaccatttttcctttatattttcaattctaacattcatgtctaatgcagctatcatgaat |
389 |
Q |
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| T |
46809573 |
atattaagttaataacacagtgataataaaggttaaataaaaccatttttcctttatattttcaattctaacattcatgtctaatgcagctatcatgaat |
46809474 |
T |
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| Q |
390 |
attggttatgttggtataaaagatttctttgatacacatttgggagcacacactctccgagtgtccgcattgtggcgcatactagtgtgat |
480 |
Q |
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| T |
46809473 |
attggttatgttggtataaaagatttctttgatacacatttgggagcacacactttccgagtgtccgcattgtggcgcatactagtgtgat |
46809383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 46809840 - 46809694
Alignment:
| Q |
16 |
caataacatacaagtgaaagatgccttatccttgtgtgtctctgagcttaactatagacaattttagtcaattcatggaaagggttatccagaagaatca |
115 |
Q |
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| T |
46809840 |
caataacatacaagtgaaagatgccttatccttgtgtgtctctgagcttaattatagacaattttagtcaattcatggaaagggttatccagaagaatca |
46809741 |
T |
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| Q |
116 |
gtttgcttacagttcctgccttagactatgatatatctgccttggat |
162 |
Q |
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| T |
46809740 |
gtttgcttacagttcctgccttagactatgatatatctgccttggat |
46809694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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