View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6778_low_10 (Length: 208)

Name: NF6778_low_10
Description: NF6778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6778_low_10
NF6778_low_10
[»] chr4 (20 HSPs)
chr4 (13-201)||(26192649-26192837)
chr4 (1-158)||(26176558-26176714)
chr4 (1-158)||(26192866-26193023)
chr4 (13-158)||(26192779-26192924)
chr4 (13-155)||(26176474-26176616)
chr4 (1-54)||(26176715-26176768)
chr4 (7-134)||(26162757-26162884)
chr4 (88-162)||(26162957-26163031)
chr4 (91-161)||(26162817-26162887)
chr4 (1-111)||(26162921-26163031)
chr4 (1-51)||(26162753-26162803)
chr4 (91-161)||(26163240-26163310)
chr4 (91-162)||(26163380-26163451)
chr4 (1-54)||(26163455-26163508)
chr4 (1-54)||(26163737-26163790)
chr4 (73-141)||(26163455-26163523)
chr4 (93-161)||(26163663-26163731)
chr4 (7-110)||(26163627-26163730)
chr4 (91-161)||(26163099-26163169)
chr4 (1-53)||(26162892-26162944)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 26192837 - 26192649
Alignment:
Q  13 ccttacataactggatatggtaaacatgaagccaaacaaccaaattacattagtggctataagatccataaccatgaatccaatggtccttacataactc 112  Q
    ||||||||||||  |||||||||||||||| |||| |||| |||||||||||  || |||| || |||||||||||||||||||||||||||||||||||    
T  26192837 ccttacataactcaatatggtaaacatgaaaccaagcaactaaattacattaccgggtatatgacccataaccatgaatccaatggtccttacataactc 26192738  T
Q  113 aatatggtaaacatgaaaccaagcaaccaaattacattactgggtacaaatatgtcattgatccaaaaggcctcccatctaccaactcc 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26192737 aatatggtaaacatgaaaccaagcaaccaaattacatttctgggtacaaatatgtcattgatccaaaaggcctcccatctaccaactcc 26192649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 26176714 - 26176558
Alignment:
Q  1 gaatcaaatgaaccttacataactggatatggtaaacatgaagccaaacaaccaaattacattagtggctataagatccataaccatgaatccaatggtc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||  || ||||||| |||||||||||||||||||||||    
T  26176714 gaatcaaatgaaccttacataactggatatggtaaa-atgaagccaaacaacaaaattacattatcgggtataagacccataaccatgaatccaatggtc 26176616  T
Q  101 cttacataactcaatatggtaaacatgaaaccaagcaaccaaattacattactgggta 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26176615 cttacataactcaatatggtaaacatgaaaccaagcaaccaaattacattaccgggta 26176558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 26193023 - 26192866
Alignment:
Q  1 gaatcaaatgaaccttacataactggatatggtaaacatgaagccaaacaaccaaattacattagtggctataagatccataaccatgaatccaatggtc 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||  ||| ||||||||||| ||| |||| || |||||||||||||||||||||||    
T  26193023 gaatcaaattaaccttacataactggatatggtaaacatgaagccaattaactaaattacattactgggtatatgacccataaccatgaatccaatggtc 26192924  T
Q  101 cttacataactcaatatggtaaacatgaaaccaagcaaccaaattacattactgggta 158  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  26192923 cttacataactcaatatggtaaacatgaaaccaagcaacaaaattacattaccgggta 26192866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 26192924 - 26192779
Alignment:
Q  13 ccttacataactggatatggtaaacatgaagccaaacaaccaaattacattagtggctataagatccataaccatgaatccaatggtccttacataactc 112  Q
    ||||||||||||  |||||||||||||||| |||| |||| |||||||||||  || |||| || |||||||||||||||||||||||||||||||||||    
T  26192924 ccttacataactcaatatggtaaacatgaaaccaagcaacaaaattacattaccgggtataggacccataaccatgaatccaatggtccttacataactc 26192825  T
Q  113 aatatggtaaacatgaaaccaagcaaccaaattacattactgggta 158  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||    
T  26192824 aatatggtaaacatgaaaccaagcaactaaattacattaccgggta 26192779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 26176616 - 26176474
Alignment:
Q  13 ccttacataactggatatggtaaacatgaagccaaacaaccaaattacattagtggctataagatccataaccatgaatccaatggtccttacataactc 112  Q
    ||||||||||||  |||||||||||||||| |||| ||||||||||||||||  || |||| || |||||||||| ||||||| ||  |||||||||||     
T  26176616 ccttacataactcaatatggtaaacatgaaaccaagcaaccaaattacattaccgggtataggacccataaccataaatccaacggagcttacataactt 26176517  T
Q  113 aatatggtaaacatgaaaccaagcaaccaaattacattactgg 155  Q
     ||||| ||||||||||  ||||||||||||||||||||||||    
T  26176516 catatgataaacatgaaggcaagcaaccaaattacattactgg 26176474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26176768 - 26176715
Alignment:
Q  1 gaatcaaatgaaccttacataactggatatggtaaacatgaagccaaacaacca 54  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26176768 gaatcaaataaaccttacataactggatatggtaaacatgaagccaaacaacca 26176715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 26162884 - 26162757
Alignment:
Q  7 aatgaaccttacataactggatatggtaaacatgaagccaaacaaccaaattacattagtggctataagatccataaccatgaatccaatggtccttaca 106  Q
    |||| |||||||||||||  |||||||||||||||||||||  | ||| |||||| ||  || || |||| ||||| ||||||||||||||  |||||||    
T  26162884 aatggaccttacataactcaatatggtaaacatgaagccaagaacccagattacactaccgggtacaagacccatacccatgaatccaatgaaccttaca 26162785  T
Q  107 taactcaatatggtaaacatgaaaccaa 134  Q
    |||||   ||||||||||||||| ||||    
T  26162784 taactgcctatggtaaacatgaagccaa 26162757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 26163031 - 26162957
Alignment:
Q  88 gaatccaatggtccttacataactcaatatggtaaacatgaaaccaagcaaccaa-attacattactgggtacaaa 162  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||    
T  26163031 gaatccaatggaccttacataactcaatatggtaaacatgaagccaag-aaccaagattacactactgggtacaaa 26162957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 26162887 - 26162817
Alignment:
Q  91 tccaatggtccttacataactcaatatggtaaacatgaaaccaagcaaccaaattacattactgggtacaa 161  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| | ||| |||||| ||| ||||||||    
T  26162887 tccaatggaccttacataactcaatatggtaaacatgaagccaagaacccagattacactaccgggtacaa 26162817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26163031 - 26162921
Alignment:
Q  1 gaatcaaatgaaccttacataactggatatggtaaacatgaagccaaacaaccaa-attacattagtggctataagatccataaccatgaatccaatggt 99  Q
    ||||| |||| |||||||||||||  ||||||||||||||||||| || |||||| |||||| || ||| || || | ||||| ||||||||||||||      
T  26163031 gaatccaatggaccttacataactcaatatggtaaacatgaagcc-aagaaccaagattacactactgggtacaaaacccatacccatgaatccaatgaa 26162933  T
Q  100 ccttacataact 111  Q
    ||||||||||||    
T  26162932 ccttacataact 26162921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26162803 - 26162753
Alignment:
Q  1 gaatcaaatgaaccttacataactggatatggtaaacatgaagccaaacaa 51  Q
    ||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  26162803 gaatccaatgaaccttacataactgcctatggtaaacatgaagccaaacaa 26162753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 26163310 - 26163240
Alignment:
Q  91 tccaatggtccttacataactcaatatggtaaacatgaaaccaagcaaccaaattacattactgggtacaa 161  Q
    |||||||| ||||||||||||||||||||||||||||||  |||| | ||| |||||| ||| ||||||||    
T  26163310 tccaatggaccttacataactcaatatggtaaacatgaagacaagaacccagattacactaccgggtacaa 26163240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 26163451 - 26163380
Alignment:
Q  91 tccaatggtccttacataactcaatatggtaaacatgaaaccaagcaaccaaattacattactgggtacaaa 162  Q
    |||||||| |||||||||||||||||||||||||||| | ||||| |  || |||||| ||| |||||||||    
T  26163451 tccaatggaccttacataactcaatatggtaaacatgtagccaaggacgcagattacactaccgggtacaaa 26163380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26163508 - 26163455
Alignment:
Q  1 gaatcaaatgaaccttacataactggatatggtaaacatgaagccaaacaacca 54  Q
    ||||| |||| ||||||||||||||  ||||||| |||||||||||||||||||    
T  26163508 gaatccaatggaccttacataactgcctatggtagacatgaagccaaacaacca 26163455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26163790 - 26163737
Alignment:
Q  1 gaatcaaatgaaccttacataactggatatggtaaacatgaagccaaacaacca 54  Q
    ||||| |||||||||||||||||||| ||||||| |||| ||| ||||||||||    
T  26163790 gaatccaatgaaccttacataactggctatggtagacatcaagtcaaacaacca 26163737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 26163523 - 26163455
Alignment:
Q  73 aagatccataaccatgaatccaatggtccttacataactcaatatggtaaacatgaaaccaagcaacca 141  Q
    |||| ||||| ||||||||||||||| ||||||||||||   ||||||| ||||||| |||| ||||||    
T  26163523 aagacccatacccatgaatccaatggaccttacataactgcctatggtagacatgaagccaaacaacca 26163455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 26163731 - 26163663
Alignment:
Q  93 caatggtccttacataactcaatatggtaaacatgaaaccaagcaaccaaattacattactgggtacaa 161  Q
    |||||| |||||||||||||||||| ||||||||||| ||||| | |||  ||||| ||| ||||||||    
T  26163731 caatggaccttacataactcaatatagtaaacatgaagccaagaatccaggttacactaccgggtacaa 26163663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 26163730 - 26163627
Alignment:
Q  7 aatgaaccttacataactggatatggtaaacatgaagccaaacaaccaaattacattagtggctataagatccataaccatgaatccaatggtccttaca 106  Q
    |||| |||||||||||||  |||| ||||||||||||||||  | |||  ||||| ||  || || |||| ||||| ||||||||||||||  |||||||    
T  26163730 aatggaccttacataactcaatatagtaaacatgaagccaagaatccaggttacactaccgggtacaagacccatacccatgaatccaatgaaccttaca 26163631  T
Q  107 taac 110  Q
    ||||    
T  26163630 taac 26163627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 26163169 - 26163099
Alignment:
Q  91 tccaatggtccttacataactcaatatggtaaacatgaaaccaagcaaccaaattacattactgggtacaa 161  Q
    |||||| | |||||||||||||||||||||| ||||||| ||||| | ||| |||||| |||  |||||||    
T  26163169 tccaatagaccttacataactcaatatggtacacatgaagccaagaacccagattacactacccggtacaa 26163099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26162944 - 26162892
Alignment:
Q  1 gaatcaaatgaaccttacataactggatatggtaaacatgaagccaaacaacc 53  Q
    ||||| |||||||||||||||||||   |||||| |||||||| |||||||||    
T  26162944 gaatccaatgaaccttacataactgcccatggtagacatgaagtcaaacaacc 26162892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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