View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6778_low_2 (Length: 595)
Name: NF6778_low_2
Description: NF6778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6778_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 26 - 576
Target Start/End: Original strand, 28309837 - 28310387
Alignment:
| Q |
26 |
tggctcccttcctccgtcttcctcggctcctatcatagtggctacggctgggtggatgctgaagctcagcctgtctcttgtggccacaacaacactgcta |
125 |
Q |
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| T |
28309837 |
tggctcccttcctccttcttcctcggctcctatcacagtggctacggccgggtggatgttgaagctcagcctgtctcttatggccacaacaacactgcta |
28309936 |
T |
|
| Q |
126 |
gcattttcactagcaatattctcctcctcccttgtaaacacatgttgcaaaaaccaaattgtgggactcacgattttctcgaacttttcattctttgcaa |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28309937 |
gcattttcactagcaatattctcctcctcccttgtaaacacatgttgcaaaaaccaaattgtgggactcacgattttctcgaacttttcattctttgcaa |
28310036 |
T |
|
| Q |
226 |
gtatcttcatgtctcatggcctcaaaagcgacctcggtgcaccaaacatttacaagaccaggaccagctgcctttgggctgatatgatactttggattta |
325 |
Q |
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| T |
28310037 |
gtatcttcatgtcttatggcctcaaaagcgacctcggtgcaccaaacatttacaagaccaggaccagctgcctttgggttgatatgatactttgggttta |
28310136 |
T |
|
| Q |
326 |
taatgttgtatgtggcttgtgttccctcttcattgtcttctcattgttggtgtaggatgcttgttagagagaaaagggtgcatttgcttttcatgttaat |
425 |
Q |
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| T |
28310137 |
taatgttgtatgtggcttgtgccacctcttcactgtcttctcattgttggtgtaggatgcttgttagagagaaaagggtgcatttgcttttcatgttaat |
28310236 |
T |
|
| Q |
426 |
ttgtaggttcatgaaacaaaaataaaagtaatatgtctagtactttagttggatttctaagaaagagattgtactcaaattaactagatatattttagtg |
525 |
Q |
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| T |
28310237 |
ttgtaggttcatgaaacaaaaattaaagtaatatgtctagtactttagttggatttctaagaaagagattgtactcaaattaactagatatattttagta |
28310336 |
T |
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| Q |
526 |
ttttatctcatattacttaattttaatttttgttgaagacaatatttacct |
576 |
Q |
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| T |
28310337 |
ttttatctcatattacttaattttaatttctgttgaagacaatatttacct |
28310387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 350 - 581
Target Start/End: Original strand, 28305176 - 28305405
Alignment:
| Q |
350 |
cctcttcattgtcttctcattgttggtgtaggatgcttgttagagagaaaagggtgcatttgcttttcatgttaatttgtaggttcatgaaacaaaaata |
449 |
Q |
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||||||| |||||| |||||||||||||| |||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28305176 |
cctcttctatgtcttttcattgttggtgtatgatgattgttagagcataa--gttgcatttgcttttcatgttaatttgtaggttcatgaaacaaaaata |
28305273 |
T |
|
| Q |
450 |
aaagtaatatgtctagtactttagttggatttctaagaaagagattgtactcaaattaactagatatattttagtgttttatctcatattacttaatttt |
549 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
28305274 |
aaagtaatatgtctagtactttagttagttttctaagaaagagattgtactcaaattaactttaactattttagtgttttatctcatattacttaatttt |
28305373 |
T |
|
| Q |
550 |
aatttttgttgaagacaatatttacctgatgt |
581 |
Q |
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||||| |||| |||||||||||||||| |||| |
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| T |
28305374 |
aatttatgttaaagacaatatttaccttatgt |
28305405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 476 - 587
Target Start/End: Complemental strand, 19796109 - 19796000
Alignment:
| Q |
476 |
ggatttctaagaaagagattgtactcaaattaactagatatattttagtgttttatctcatattacttaattttaatttttgttgaagacaatatttacc |
575 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
19796109 |
ggatttctaagaaagagattgtactcaaattaacttgatcg-ttttagtgttttatctcatattacttaattttaatttctgtt-aagacaatatttacc |
19796012 |
T |
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| Q |
576 |
tgatgtccatct |
587 |
Q |
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| T |
19796011 |
ttatgttcatct |
19796000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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