View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6778_low_6 (Length: 336)

Name: NF6778_low_6
Description: NF6778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6778_low_6
NF6778_low_6
[»] chr7 (6 HSPs)
chr7 (9-323)||(18395911-18396234)
chr7 (209-268)||(27073633-27073692)
chr7 (209-268)||(27204621-27204680)
chr7 (215-320)||(40808414-40808521)
chr7 (256-305)||(23565313-23565363)
chr7 (222-302)||(36146678-36146759)
[»] chr8 (8 HSPs)
chr8 (201-320)||(11712240-11712361)
chr8 (222-303)||(32902442-32902524)
chr8 (225-303)||(29796578-29796656)
chr8 (170-251)||(7597380-7597462)
chr8 (201-251)||(8153572-8153622)
chr8 (225-278)||(3232092-3232145)
chr8 (201-278)||(8863333-8863409)
chr8 (229-277)||(18141659-18141706)
[»] chr2 (4 HSPs)
chr2 (201-320)||(4560904-4561025)
chr2 (234-278)||(28671797-28671841)
chr2 (229-303)||(36773387-36773462)
chr2 (233-316)||(11067134-11067219)
[»] chr4 (7 HSPs)
chr4 (163-320)||(21704065-21704225)
chr4 (163-278)||(3739397-3739511)
chr4 (229-316)||(6677306-6677394)
chr4 (222-303)||(36463657-36463738)
chr4 (225-268)||(4587792-4587835)
chr4 (223-256)||(43208174-43208207)
chr4 (234-320)||(37755162-37755250)
[»] scaffold0129 (1 HSPs)
scaffold0129 (222-302)||(19854-19933)
[»] chr1 (4 HSPs)
chr1 (229-303)||(8871315-8871390)
chr1 (217-273)||(2263271-2263327)
chr1 (227-303)||(28265821-28265898)
chr1 (203-251)||(25116407-25116455)
[»] chr5 (1 HSPs)
chr5 (204-278)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (204-278)||(21156738-21156811)
chr3 (225-278)||(40519479-40519532)
chr3 (225-278)||(2075350-2075403)
chr3 (229-273)||(9666754-9666797)
chr3 (222-278)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 323
Target Start/End: Original strand, 18395911 - 18396234
Alignment:
Q  9 gatggacatcatcaaggaaaacaaatgttgaaatttgtctaaaatatcgacaaaaattgggccgtgatttgcaaaaatcgtgacgcgattttggttaagg 108  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  18395911 gatggccataatcaaggaaaacaaatgttgaaatttgtctaaaaaatcgacaaaaattgggccgcgatttgcaaaaatcgtgacgagattttggttaagg 18396010  T
Q  109 t---------tttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 199  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396011 ttttggaggttttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 18396110  T
Q  200 tacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactt 299  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  18396111 tacgattttctcggaacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagagagaaactttggatatcaaggaggtaactt 18396210  T
Q  300 taggttgaatgtctttggtgatgt 323  Q
    ||||||||||||||||||||||||    
T  18396211 taggttgaatgtctttggtgatgt 18396234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 27073633 - 27073692
Alignment:
Q  209 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 268  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27073633 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27073692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 27204680 - 27204621
Alignment:
Q  209 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 268  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27204680 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27204621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 40808414 - 40808521
Alignment:
Q  215 acttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtc 312  Q
    ||||||||  ||||||  ||||||||||||||||| |||||||  ||| ||||| || |||||| | | ||| ||||||||||||||| |||||| ||||    
T  40808414 acttgtgctctatatagaacttcattcttcatgttataagtaggacttaaagagagataaacttagagaatcaaaggaggtaactttagggttgagtgtc 40808513  T
Q  313 tttggtga 320  Q
    ||||||||    
T  40808514 tttggtga 40808521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 23565363 - 23565313
Alignment:
Q  256 agagcttcaagagtgagaaactttgggtatc-aaggaggtaactttaggtt 305  Q
    ||||||||||||| ||||||||| || |||| |||||||||||||||||||    
T  23565363 agagcttcaagagagagaaacttgggatatcaaaggaggtaactttaggtt 23565313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 36146759 - 36146678
Alignment:
Q  222 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttag 302  Q
    |||||| |||| ||||||||||||| ||||  | ||||||||||||| || |||||| ||  ||| ||||||||||||||||    
T  36146759 cattatttaaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaactttag 36146678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 201 - 320
Target Start/End: Complemental strand, 11712361 - 11712240
Alignment:
Q  201 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactt 299  Q
    |||||||||| ||||| |||||| ||||||||  ||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| || ||||||||||    
T  11712361 acgattttcttgggacatgtgcactatataaggtttcattctttatgttttaggtagagcttcaagagagagaaacttagggtatcaaatgaggtaactt 11712262  T
Q  300 ta-ggttgaatgtctttggtga 320  Q
    || |||||| ||||||||||||    
T  11712261 tagggttgagtgtctttggtga 11712240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 32902524 - 32902442
Alignment:
Q  222 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 303  Q
    |||| ||||||||||||||||||||||||| || || |||||||||| ||||||||| ||  |||| | ||||||||||||||    
T  32902524 cattgtataagacttcattcttcatgttttgaggagggcttcaagagagagaaacttgggaaatcagatgaggtaactttagg 32902442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 29796656 - 29796578
Alignment:
Q  225 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 303  Q
    |||||||| |||||||||||||||||| || ||| ||||||||| |||||||||  |  ||| |||||||||||||||||    
T  29796656 tatataaggcttcattcttcatgttttgaggaga-cttcaagagagagaaacttgagaaatcaaaggaggtaactttagg 29796578  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 7597380 - 7597462
Alignment:
Q  170 aaatcgtggcacaattagtgaaaattgtgatacga-ttttctcgggacttgtgcattatataagacttcattcttcatgtttt 251  Q
    |||||||||||||||| |||||||| | |  || | |||||||| || ||| ||| |||||||| ||||||||||||||||||    
T  7597380 aaatcgtggcacaattggtgaaaatcggggcacaatttttctcgagatttgagcactatataaggcttcattcttcatgtttt 7597462  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 8153572 - 8153622
Alignment:
Q  201 acgattttctcgggacttgtgcattatataagacttcattcttcatgtttt 251  Q
    |||||||||||||  ||||| ||||||| ||| ||||||||||||||||||    
T  8153572 acgattttctcggatcttgtacattataaaaggcttcattcttcatgtttt 8153622  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 3232145 - 3232092
Alignment:
Q  225 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 278  Q
    |||||||| |||||||||||||||||| |||||||| | |||||  ||||||||    
T  3232145 tatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaactt 3232092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 8863333 - 8863409
Alignment:
Q  201 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 278  Q
    ||||||||||| |  | |||||| |||||||| ||||||||||||||||||  || |||||||||||| || ||||||    
T  8863333 acgattttctcagatcatgtgcactatataaggcttcattcttcatgttttgggt-gagcttcaagagagaaaaactt 8863409  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 18141659 - 18141706
Alignment:
Q  229 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaact 277  Q
    |||| ||||||||||||| |||| |||||||||||||||| ||||||||    
T  18141659 taaggcttcattcttcat-ttttgagtagagcttcaagagagagaaact 18141706  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 320
Target Start/End: Original strand, 4560904 - 4561025
Alignment:
Q  201 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactt 299  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || | | ||||||||| || |||||| ||  |||| ||||| ||||||    
T  4560904 acgattttctcgggacttgtgcattgtataagacttcattcttcatgtttttagaataacttcaagagagaaaaacttaggaaatcagaggagataactt 4561003  T
Q  300 tag-gttgaatgtctttggtga 320  Q
    ||| ||||| ||||||||||||    
T  4561004 tagagttgagtgtctttggtga 4561025  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 28671797 - 28671841
Alignment:
Q  234 cttcattcttcatgttttaagtagagcttcaagagtgagaaactt 278  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||    
T  28671797 cttcattcttcatgttttgagtagggcttcaagagagagaaactt 28671841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 36773387 - 36773462
Alignment:
Q  229 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 303  Q
    |||||||||||||||||| ||||   |||||||||||||| ||||||||  ||  ||| |||||||||||||||||    
T  36773387 taagacttcattcttcattttttgtatagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagg 36773462  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 11067134 - 11067219
Alignment:
Q  233 acttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttg 316  Q
    |||||||||||||| |||| || || |||||||||| ||||||||  ||  ||| ||||||||||||||| |||||| ||||||||    
T  11067134 acttcattcttcattttttgaggagggcttcaagagagagaaactagggaaatcaaaggaggtaactttatggttgattgtctttg 11067219  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 320
Target Start/End: Complemental strand, 21704225 - 21704065
Alignment:
Q  163 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtaga-gct 261  Q
    |||| |||||||||||||| |||||  ||||||| |  ||||||||  | |||| |||||| ||| |||||||||||| ||||||||||  ||||| |||    
T  21704225 taacgtgaaatcgtggcacgattaggtaaaattggggcacgattttgacaggacatgtgcactatttaagacttcatttttcatgttttgtgtagaggct 21704126  T
Q  262 tcaagagtgagaaactttgggtatc-aaggaggtaacttt-aggttgaatgtctttggtga 320  Q
    ||||||| |||||||||  |  ||| || ||||||||||| |||||||| |||||||||||    
T  21704125 tcaagagagagaaacttgagaaatcaaatgaggtaactttaaggttgaaagtctttggtga 21704065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 3739511 - 3739397
Alignment:
Q  163 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagctt 262  Q
    |||| ||||||||||||| |||  ||| |||| | |  ||||||||  |||||| |||||||||| ||||||||||||||||||||||| |||| |  ||    
T  3739511 taacgtgaaatcgtggcaaaatgtgtgtaaatcgaggcacgattttgacgggacatgtgcattatttaagacttcattcttcatgttttgagtaca-ttt 3739413  T
Q  263 caagagtgagaaactt 278  Q
    |||||| |||||||||    
T  3739412 caagagagagaaactt 3739397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 6677306 - 6677394
Alignment:
Q  229 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttg 316  Q
    |||| |||||||||||||||||| ||||| |||||||||  |||||| || ||||||| ||||||||||||||| |||||| ||||||||    
T  6677306 taaggcttcattcttcatgttttgagtag-gcttcaagaaagagaaatttagggtatcaaaggaggtaactttagggttgagtgtctttg 6677394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 36463738 - 36463657
Alignment:
Q  222 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 303  Q
    |||||| |||| ||||||||||||| |||| |||||||||||||||| || |||||| ||  |||| ||||||||||||||||    
T  36463738 cattatttaaggcttcattcttcat-ttttgagtagagcttcaagagagaaaaacttgggaaatcataggaggtaactttagg 36463657  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 4587792 - 4587835
Alignment:
Q  225 tatataagacttcattcttcatgttttaagtagagcttcaagag 268  Q
    |||| |||||||||||||||||||||| || |||||||||||||    
T  4587792 tataaaagacttcattcttcatgttttgaggagagcttcaagag 4587835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 43208207 - 43208174
Alignment:
Q  223 attatataagacttcattcttcatgttttaagta 256  Q
    ||||||||||||||||||||||||||||| ||||    
T  43208207 attatataagacttcattcttcatgttttgagta 43208174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 37755250 - 37755162
Alignment:
Q  234 cttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg-ttgaatgtctttggtga 320  Q
    |||||||||||||||||| ||  ||| |||||||| ||||||||| |   ||| ||||||||||||||||| ||||  |||||||||||    
T  37755250 cttcattcttcatgttttgagatgagtttcaagagagagaaacttggaaaatcaaaggaggtaactttaggattgagagtctttggtga 37755162  T

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Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 19933 - 19854
Alignment:
Q  222 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactttag 302  Q
    ||||||||| ||||||||||||| |||||| ||||| |||||||||| | ||||||| ||  |||||||||||||||||||    
T  19933 cattatatatgacttcattcttcttgttttgagtag-gcttcaagagagtgaaacttgggaaatcaaggaggtaactttag 19854  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 8871390 - 8871315
Alignment:
Q  229 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 303  Q
    |||| ||||||||||||||||||  ||||||||||||||| ||||||||  || |||| ||| |||||||||||||    
T  8871390 taaggcttcattcttcatgtttttggtagagcttcaagagagagaaactagggatatcaaagcaggtaactttagg 8871315  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 2263327 - 2263271
Alignment:
Q  217 ttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgaga 273  Q
    ||||||| |||||||| ||||||||||||||||||  ||||||| ||||||| ||||    
T  2263327 ttgtgcactatataaggcttcattcttcatgttttgtgtagagcgtcaagagagaga 2263271  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 28265898 - 28265821
Alignment:
Q  227 tataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 303  Q
    |||||| ||||||||||||| ||||  | ||||||||||||| ||||||||  ||  ||| |||||||||||||||||    
T  28265898 tataaggcttcattcttcattttttgggaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagg 28265821  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 25116407 - 25116455
Alignment:
Q  203 gattttctcgggacttgtgcattatataagacttcattcttcatgtttt 251  Q
    ||||||||| || | |||||| |||||||| ||||||||||||||||||    
T  25116407 gattttctcaggtcatgtgcactatataagtcttcattcttcatgtttt 25116455  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 5611524 - 5611451
Alignment:
Q  204 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 278  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  5611524 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 5611451  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 21156811 - 21156738
Alignment:
Q  204 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 278  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  21156811 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 21156738  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 40519532 - 40519479
Alignment:
Q  225 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 278  Q
    |||||||| |||||||| |||||| || |||||||||||||||| |||||||||    
T  40519532 tatataaggcttcattcatcatgtattgagtagagcttcaagagagagaaactt 40519479  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 2075403 - 2075350
Alignment:
Q  225 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 278  Q
    |||||||| |||||||||||||||||| |||   |||||||||| |||||||||    
T  2075403 tatataaggcttcattcttcatgttttgagtgaggcttcaagagagagaaactt 2075350  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 9666797 - 9666754
Alignment:
Q  229 taagacttcattcttcatgttttaagtagagcttcaagagtgaga 273  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||    
T  9666797 taagacttcattcttcat-ttttgagtagagcttcaagagagaga 9666754  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 37761820 - 37761765
Alignment:
Q  222 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 278  Q
    ||||||||||||||| |||||||||||||| ||| | |||||||||| ||| |||||    
T  37761820 cattatataagactttattcttcatgtttttagttg-gcttcaagagagagtaactt 37761765  T

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