View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6779_high_3 (Length: 266)
Name: NF6779_high_3
Description: NF6779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6779_high_3 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 2700282 - 2700547
Alignment:
| Q |
1 |
actattatcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctgtc |
100 |
Q |
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| T |
2700282 |
actattatcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctgtc |
2700381 |
T |
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| Q |
101 |
atatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttcttctgtctccctcccaaactactatctgtgttggtaaccctgcaggat |
200 |
Q |
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| T |
2700382 |
atatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttcttctgtctccctcccaaactactatctgtgttggtaaccctgcaggat |
2700481 |
T |
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| Q |
201 |
caactcccatagtatggttccctaatgaaggatctgtacttgatttccatgaagtgaagaaaaaac |
266 |
Q |
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| T |
2700482 |
caactcccatagtatggttccctaatgaaggatctgtacttgatttccatgaagtgaagaaaaaac |
2700547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 2692595 - 2692845
Alignment:
| Q |
16 |
cttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctgtcatatcaacaccagta |
115 |
Q |
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| T |
2692595 |
cttccactcattatcattataaacaaaatacctatctccattattatcataattaagtacaaaaccatgaagaaaactgcctgtcatatcaacaccagta |
2692694 |
T |
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| Q |
116 |
aaaattctaccatcccaataaccacttctccatgttcttctgtctccctcccaaactactatctgtgttggtaaccctgcaggatcaactcccatagtat |
215 |
Q |
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| T |
2692695 |
aaaattctaccatcccagtaaccacttctccatatttttctctctccatccctaactactacctgtggtggtaacccgttaggatcaactcccaaagtat |
2692794 |
T |
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| Q |
216 |
ggttccctaatgaaggatctgtacttgatttccatgaagtgaagaaaaaac |
266 |
Q |
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| T |
2692795 |
gattccctaatgaaggatctgtacttgatttccatgaagtgaagaaaaaac |
2692845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 14521657 - 14521922
Alignment:
| Q |
1 |
actattatcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctgtc |
100 |
Q |
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||||||| ||||| |||| |||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| | || |
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| T |
14521657 |
actattaccattcaacttccactcattatcattataaacaaaatatctatctccattactatcataatttagtataaaaccatgaagaaaactacttttc |
14521756 |
T |
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| Q |
101 |
atatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttcttctgtctccctcccaaactactatctgtgttggtaaccctgcaggat |
200 |
Q |
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| T |
14521757 |
gcatcaacaccggtaaaaaccctaccatcccaataaccacttctccatttttttctctcaccttcccaaacaaatacctgtggtggtaaccctacagtat |
14521856 |
T |
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| Q |
201 |
caactcccatagtatggttccctaatgaaggatctgtacttgatttccatgaagtgaagaaaaaac |
266 |
Q |
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| T |
14521857 |
caattcccattttatggttccctattgaaggatctgtacttgatttccatgatgtgaagaaaaaac |
14521922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 36288777 - 36288737
Alignment:
| Q |
107 |
acaccagtaaaaattctaccatcccaataaccacttctcca |
147 |
Q |
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| T |
36288777 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
36288737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 12096797 - 12096837
Alignment:
| Q |
107 |
acaccagtaaaaattctaccatcccaataaccacttctcca |
147 |
Q |
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| T |
12096797 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
12096837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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