View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6779_low_10 (Length: 203)
Name: NF6779_low_10
Description: NF6779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6779_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 6194647 - 6194479
Alignment:
| Q |
19 |
acatgaaagatttgttgtgtatcattgtcatcatcaatgctaacttcacactcaattcctggccatgttgtatcagtacatggttgaggatgtgtttgtg |
118 |
Q |
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| T |
6194647 |
acatgaaagatttgttgtgtatcatt---atcatcaatgctaacttcacactcaattcctggccatgttgtatcagtacatggttgaggatgtgtttgtg |
6194551 |
T |
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| Q |
119 |
aaaaatcaggttcatccaaaagtgcttccatcacttcaaacaatcctaataattccttctcttccaacacca |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6194550 |
aaaaatcaggttcatccaaaagtgcttccatcacttcaaacaatcctaataattccttctcttccatcacca |
6194479 |
T |
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