View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6779_low_6 (Length: 254)
Name: NF6779_low_6
Description: NF6779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6779_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 25732733 - 25732967
Alignment:
| Q |
1 |
tgaagaagttgatgtggaaagtcagaatgctatagatgttattgttatgaatagagtagnnnnnnnnnnnnnnnnnnnngttggagagactgatgacgtt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25732733 |
tgaagaagttgatgtggaaagtcagaatgctatagatgttattgttatgaatagagtagataataataataataat---gttggagagactgatgacgtt |
25732829 |
T |
|
| Q |
101 |
gtaatgaatgaccctgctgcggaagcacctcccaatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25732830 |
gtaatgaatgaccctgctgcggaagcacctctcaatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcg |
25732929 |
T |
|
| Q |
201 |
gggtttaggaagcccgagcatagttgcgactcttaagt |
238 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| |
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|
| T |
25732930 |
gggtctaggaagcccgagcatagttccgactcttaagt |
25732967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 16940002 - 16939874
Alignment:
| Q |
90 |
ctgatgacgttgtaatgaatgaccctgctgcggaagcacctcccaatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcc |
189 |
Q |
| |
|
||||||| ||||||||||||| |||| ||| |||| ||| |||||||||||||||||| | ||||||||||||||| ||||||||||| || |
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|
| T |
16940002 |
ctgatgatattgtaatgaatgagtctgcctcggcagcaaatcctaatgtaatggcgggacctggttaccaggcccgccaagaaaaatgagtttcatcagt |
16939903 |
T |
|
| Q |
190 |
tggaactgtcggggtttaggaagcccgag |
218 |
Q |
| |
|
||||||||| |||||||||| |||||||| |
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|
| T |
16939902 |
tggaactgtaggggtttaggtagcccgag |
16939874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 30472764 - 30472660
Alignment:
| Q |
134 |
aatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcggggtttaggaagcccgagcatagttgcgactct |
233 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||||||||||| | |||||||||||||| | || |||||||| | |||| | ||||| |
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|
| T |
30472764 |
aatgtaatggcggagcctggtcaccaggcccgccaaggaaaatgagttttatcgtatggaactgtcggggcctgggcagcccgagtacagttcccactct |
30472665 |
T |
|
| Q |
234 |
taagt |
238 |
Q |
| |
|
||||| |
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|
| T |
30472664 |
taagt |
30472660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 3966428 - 3966337
Alignment:
| Q |
134 |
aatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcggggtttaggaagcccgagcatagtt |
225 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| |||| |
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|
| T |
3966428 |
aatgtaatggcgggacctggacaccatgcccgccaaggtaaatgagtcttatatggtggaactgtcggggtttaggtagcccgagcacagtt |
3966337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 9613633 - 9613542
Alignment:
| Q |
134 |
aatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcggggtttaggaagcccgagcatagtt |
225 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||| |||| |
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|
| T |
9613633 |
aatgtaatggcgggacctgaacaccaggcccgccaaggcaaatgagtcttatttggtggaactgtcggggtttaggtagcccgagcacagtt |
9613542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 33309081 - 33308961
Alignment:
| Q |
98 |
gttgtaatgaatgaccctgctgcggaagcacctcccaatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactg |
197 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| | | |||||||||||||||||| ||||||||||||||| || | ||||||||| ||| |||||||| |
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|
| T |
33309081 |
gttgtaatgaatgagtctgctacggcagcaaatgctaatgtaatggcgggacctggacaccaggcccgcccagaacaatgagtttcttagtgtggaactg |
33308982 |
T |
|
| Q |
198 |
tcggggtttaggaagcccgag |
218 |
Q |
| |
|
||||||| | || |||||||| |
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|
| T |
33308981 |
tcggggtcttggtagcccgag |
33308961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 35318350 - 35318470
Alignment:
| Q |
98 |
gttgtaatgaatgaccctgctgcggaagcacctcccaatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactg |
197 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| | | |||||||||||||||||| ||||||||||||||| || | ||||||||| ||| |||||||| |
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|
| T |
35318350 |
gttgtaatgaatgagtctgctacggcagcaaatgctaatgtaatggcgggacctggacaccaggcccgcccagaacaatgagtttcttagtgtggaactg |
35318449 |
T |
|
| Q |
198 |
tcggggtttaggaagcccgag |
218 |
Q |
| |
|
||||||| | || |||||||| |
|
|
| T |
35318450 |
tcggggtcttggtagcccgag |
35318470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 45278368 - 45278264
Alignment:
| Q |
134 |
aatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcggggtttaggaagcccgagcatagttgcgactct |
233 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||||||||||| | |||||||||||||| | || |||||||| | |||| | ||||| |
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|
| T |
45278368 |
aatgtaatggcggagcctggtcaccaggcccgccaaggaaaatgagttttatcgtatggaactgtcggggcctgggcagcccgagtacagttcccactct |
45278269 |
T |
|
| Q |
234 |
taagt |
238 |
Q |
| |
|
||||| |
|
|
| T |
45278268 |
taagt |
45278264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 12276052 - 12275949
Alignment:
| Q |
134 |
aatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcggggtttaggaagcccgagcatagttgcgactct |
233 |
Q |
| |
|
||||||||||||||| | | |||||||| |||||||||||||||||||||| |||||||||| ||||| | | |||| ||||||| || | ||||| |
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|
| T |
12276052 |
aatgtaatggcgggatatgggcaccaggctcgccaaggaaaatgagttttattagctggaactgttggggtctgagtagcctgagcataattcccactct |
12275953 |
T |
|
| Q |
234 |
taag |
237 |
Q |
| |
|
|||| |
|
|
| T |
12275952 |
taag |
12275949 |
T |
|
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