View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6779_low_9 (Length: 213)
Name: NF6779_low_9
Description: NF6779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6779_low_9 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 4185 - 4007
Alignment:
| Q |
22 |
atacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatcccctc |
121 |
Q |
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| T |
4185 |
atacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgat-ccctc |
4087 |
T |
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| Q |
122 |
aaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatgatgtccatc |
201 |
Q |
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| T |
4086 |
aaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatc |
4007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 3687 - 3635
Alignment:
| Q |
133 |
agctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctc |
184 |
Q |
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| T |
3687 |
agctttcttcttccattccaagcacttgtgtctcatttcttttcccttttctc |
3635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 35774298 - 35774463
Alignment:
| Q |
33 |
atactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatcccctcaaattag---- |
128 |
Q |
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| T |
35774298 |
atactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgatgatccacccaaattagtagc |
35774397 |
T |
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| Q |
129 |
--ttctagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccat |
191 |
Q |
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| T |
35774398 |
ttttctagctttcttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccat |
35774463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 35848122 - 35848254
Alignment:
| Q |
76 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcac-tttgtctcaat |
168 |
Q |
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| T |
35848122 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
35848221 |
T |
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| Q |
169 |
tcttcttccttttctccttccatgatgtccatc |
201 |
Q |
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| T |
35848222 |
tcttttcctttttctccttccatcatttccatc |
35848254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 201
Target Start/End: Complemental strand, 141 - 9
Alignment:
| Q |
76 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcac-tttgtctcaat |
168 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | | ||||||||| | |
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| T |
141 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
42 |
T |
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| Q |
169 |
tcttcttccttttctccttccatgatgtccatc |
201 |
Q |
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| T |
41 |
tcttttcctttttctccttccatcatttccatc |
9 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 551 - 481
Alignment:
| Q |
132 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatgatgtccatc |
201 |
Q |
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| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatc |
481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 551 - 481
Alignment:
| Q |
132 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatgatgtccatc |
201 |
Q |
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| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatc |
481 |
T |
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