View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6781_high_18 (Length: 266)
Name: NF6781_high_18
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_high_18 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 38136764 - 38136509
Alignment:
| Q |
20 |
agttcttctggagaaccagagttcaattcgtggatggaacaattttgatcaaactttacttaaccgttgtccattccccttaccacctgagggttaacac |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38136764 |
agttcttctggagaaccagagttcgattcgtggatggaacaattttgatcaaactttacttaaccgttgtccattccccttaccacctgagggttaacac |
38136665 |
T |
|
| Q |
120 |
nnnnnnnnn---------ttaatagatcgtaggatactctttaactaactgataagtggttgtttagtttgaccatgtaagaatctgttagagtttgtta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38136664 |
aaaaaaaataaaaaaaaattaatagatcgtaggatactctttaactaactgataagtggttgtttagtttgaccatgtaagaatctgttagagtttgtta |
38136565 |
T |
|
| Q |
211 |
gattctaactaactcatgctgatgtggcacctttactgtacatgtataactacatc |
266 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
38136564 |
gattctaactaactcatgctgatgtggtacctttactgtacatgtataaatacatc |
38136509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University