View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_high_20 (Length: 245)
Name: NF6781_high_20
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 33912360 - 33912585
Alignment:
| Q |
6 |
ttggtgttccttatgagatggatgaatttggattagatataagcatgattagcaattgaattatgttgtttgtggactgctgttaaatgacatccaaatg |
105 |
Q |
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| T |
33912360 |
ttggtgttccttatgagatggatgaatttggtttagatataagcatgattagcaattgaattatgttgtttgtggactgctgttaaatgacatccaaatg |
33912459 |
T |
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| Q |
106 |
atgatatggattcttgtttggta---aacatatggttgcatgtatttttcatgttgacgtgttcgtggttgatnnnnnnnngcattattcttatctccat |
202 |
Q |
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| T |
33912460 |
atgatatggattcttgtttggtatctaacatatggttgcatgtgtttttcatgttgacgtgttcgtggttgataaaaaaaagcattattcttatctccat |
33912559 |
T |
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| Q |
203 |
gattctttgaatcttctatttctctg |
228 |
Q |
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| T |
33912560 |
gattctttgaatcttctatttctctg |
33912585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 35908983 - 35909208
Alignment:
| Q |
6 |
ttggtgttccttatgagatggatgaatttggattagatataagcatgattagcaattgaattatgttgtttgtggactgctgttaaatgacatccaaatg |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35908983 |
ttggtgttccttatgagatggatgaatttggattagatataagcatgattagcaattga-ttatgttgtttgtggactgctgttaaatgacatccaaatg |
35909081 |
T |
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| Q |
106 |
atgatatggattcttgtttggta---aacatatggttgcatgtatttttcatgttgacgtgttcgtggttgat-nnnnnnnngcattattcttatctcca |
201 |
Q |
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| T |
35909082 |
atgatatggattcttgtttggtatctaacatatggttgcatgtatttttcatgttgacgtgttcgtggttgataaaaaaaaagcattattcttatctcca |
35909181 |
T |
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| Q |
202 |
tgattctttgaatcttctatttctctg |
228 |
Q |
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| T |
35909182 |
tgattctttgaatcttctatttctctg |
35909208 |
T |
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