View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_high_21 (Length: 242)
Name: NF6781_high_21
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 28612881 - 28612676
Alignment:
| Q |
20 |
gtatgttacaagcaaatgtgacagaggacattaacattgatatcaaaagtacgatttggttttgaattttaatgtaaagaaatgtcaacactatcaatgt |
119 |
Q |
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| T |
28612881 |
gtatgttacaagcaaatgtgacagaggacattaacattgatatcaaaagtacgatttggttttgaattttaatgtaaagaaatgtcaacactatcaatgt |
28612782 |
T |
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| Q |
120 |
ttatcaattggtgcactggcaccatgaatgagctagctagctagtagttctgaaatgtattattttcctgctcccataacctttgtaccatgtctttggt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28612781 |
ttatcaattggtgcactggcaccatgaatgagctagctagctagtagttctgaaatgtattattttcctgctcccataacctttgtaccatgtctttggt |
28612682 |
T |
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| Q |
220 |
tccttc |
225 |
Q |
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|||||| |
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| T |
28612681 |
tccttc |
28612676 |
T |
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