View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6781_high_3 (Length: 534)

Name: NF6781_high_3
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6781_high_3
NF6781_high_3
[»] chr6 (2 HSPs)
chr6 (10-420)||(28612106-28612516)
chr6 (416-534)||(28612579-28612697)
[»] chr8 (3 HSPs)
chr8 (29-412)||(12729143-12729527)
chr8 (271-412)||(28696307-28696448)
chr8 (29-109)||(44729133-44729214)
[»] chr1 (8 HSPs)
chr1 (29-412)||(49053557-49053930)
chr1 (30-412)||(49061137-49061509)
chr1 (53-202)||(42263434-42263583)
chr1 (53-206)||(50059453-50059606)
chr1 (297-403)||(50059265-50059371)
chr1 (52-203)||(52282015-52282168)
chr1 (134-208)||(10917477-10917551)
chr1 (75-167)||(17458409-17458501)
[»] chr3 (11 HSPs)
chr3 (29-412)||(52653526-52653910)
chr3 (23-208)||(40574287-40574473)
chr3 (292-410)||(50914652-50914771)
chr3 (32-203)||(33709792-33709963)
chr3 (53-206)||(31362247-31362400)
chr3 (339-408)||(2257446-2257515)
chr3 (367-412)||(23686027-23686072)
chr3 (367-412)||(24058264-24058309)
chr3 (57-109)||(23686089-23686141)
chr3 (57-109)||(24058326-24058378)
chr3 (355-412)||(33709572-33709631)
[»] chr7 (6 HSPs)
chr7 (15-409)||(12239589-12239983)
chr7 (52-230)||(34091475-34091655)
chr7 (78-198)||(24870385-24870505)
chr7 (121-203)||(24871395-24871477)
chr7 (155-208)||(30108293-30108346)
chr7 (53-173)||(20463987-20464107)
[»] chr4 (12 HSPs)
chr4 (134-412)||(24129428-24129707)
chr4 (15-203)||(48779825-48780014)
chr4 (303-412)||(20251149-20251258)
chr4 (321-412)||(122831-122922)
chr4 (297-409)||(48780111-48780222)
chr4 (29-170)||(24391830-24391970)
chr4 (52-203)||(20251370-20251523)
chr4 (302-385)||(1495028-1495110)
chr4 (292-381)||(1516576-1516664)
chr4 (169-214)||(46324440-46324485)
chr4 (365-412)||(19226769-19226818)
chr4 (151-208)||(27538195-27538252)
[»] chr5 (7 HSPs)
chr5 (263-412)||(36202868-36203017)
chr5 (29-203)||(29006447-29006622)
chr5 (15-345)||(9851409-9851740)
chr5 (47-206)||(36203051-36203209)
chr5 (292-413)||(11043019-11043140)
chr5 (353-412)||(29006222-29006280)
chr5 (290-346)||(15205185-15205241)
[»] chr2 (3 HSPs)
chr2 (15-206)||(14218851-14219043)
chr2 (277-412)||(34681329-34681464)
chr2 (159-219)||(17862390-17862450)
[»] scaffold0007 (3 HSPs)
scaffold0007 (53-206)||(217708-217861)
scaffold0007 (356-409)||(215646-215699)
scaffold0007 (352-412)||(217512-217572)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 28612106 - 28612516
Alignment:
Q  10 tatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtac 108  Q
    ||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  28612106 tatgtaaaatggtatatcggcgaatccccttcagaatacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagtatac 28612205  T
Q  109 aaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  28612206 aaaacaatgttctgtcaattcccctcgtgcactagagataagaaagaatgatttagtataattttcggcagaatttcgactcacaagaatgtgattttgt 28612305  T
Q  209 ctcta-ttttctgaatacttttcaacctccaaaataactatctttatnnnnnnnnttatttcatttgatgaagaaaaacaatcatttggaagagtttgtt 307  Q
    ||||| |||||||||||||||||  |||| ||| |  ||||||||||        |||| ||||||| ||||||||||||||||||||||||||||||||    
T  28612306 ctctatttttctgaatacttttctgcctcgaaagtgtctatctttataaagaaacttatgtcatttggtgaagaaaaacaatcatttggaagagtttgtt 28612405  T
Q  308 catgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttc 407  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||||||||||    
T  28612406 catgaattgttatattgcttcaattgtcaaacaatacacctttgctctaaaaggcctctatttaaccattacaa--ttttaaatatattttggaaatttc 28612503  T
Q  408 tctcagggtatgc 420  Q
    |||||||||||||    
T  28612504 tctcagggtatgc 28612516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 416 - 534
Target Start/End: Original strand, 28612579 - 28612697
Alignment:
Q  416 tatgccccaattcatttgataaaatgcaataacacgtgaatgcacttcacatgcatcttgaaaaaccaaaggaaatcaagtttcaggtctcaaaaaagaa 515  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28612579 tatgccccaattcatttgataaaatgcaataacacttgaatgcacttcacatgcatcttgaaaaaccaaaggaaatcaagtttcaggtctcaaaaaagaa 28612678  T
Q  516 ggaaccaaagacatggtac 534  Q
    |||||||||||||||||||    
T  28612679 ggaaccaaagacatggtac 28612697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 6e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 29 - 412
Target Start/End: Complemental strand, 12729527 - 12729143
Alignment:
Q  29 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 127  Q
    |||| ||||||||||| ||| ||| |||||||||| ||||||| |||||||||||||||||||||   |||| |||| |||  || || |||||||||||    
T  12729527 gcgattccccttcaggatacgatgaaatccttgacatgacttgcacattcacaccaagcatatcgacaattg-tagtttactgaataaagttctgtcaat 12729429  T
Q  128 tcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctctat-tttctgaatact 226  Q
    | | ||||||||||||||| || ||||||| ||||||||||||||| | |||||||| ||| ||||| ||||||||||| | ||||| ||| ||| | ||    
T  12729428 ttctctcgtgcactagagaaaagaaagaattatttagtataattttcggcagaattttgacacacaacaatgtgattttctgtctatatttttgacttct 12729329  T
Q  227 tttcaacctccaaaataactatctttatnnnnnnnnttatttcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgct 326  Q
    ||||  |||||| |||   | | ||||         |||| || | || |||||| ||||||   ||| |||||||||| |||||||| |||||||||||    
T  12729328 tttctgcctccataatgcatctatttacagagaaatttatgtcctgtggtgaagagaaacaactctttagaagagtttgctcatgaatggttatattgct 12729229  T
Q  327 tcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
    |||||| ||  ||| ||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  12729228 tcaattgtcgagcattacaccttttctctaaaaggtctctatttaaccattgcaactttccaaatatattttggaaatttctctca 12729143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 271 - 412
Target Start/End: Original strand, 28696307 - 28696448
Alignment:
Q  271 tttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctattt 370  Q
    |||| |||||| |||||  | ||| ||||||||||||||||||| |||| |||||||||||| | | ||| ||||| ||| ||||||||| |||||||||    
T  28696307 tttggtgaagagaaacatccctttagaagagtttgttcatgaatggttacattgcttcaattgttaagcattacacattttctctaaaagatctctattt 28696406  T
Q  371 aaccattgcaactttttaaatatattttggaaatttctctca 412  Q
    | |||||||||||||||  | |||||||  ||||| ||||||    
T  28696407 acccattgcaactttttcgaaatattttaaaaattactctca 28696448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 44729214 - 44729133
Alignment:
Q  29 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 109  Q
    |||||||||||| ||| |||| ||||||||||||||||||||| ||||||| ||||||| ||||| ||| || |||| ||||    
T  44729214 gcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcataccaagcgtatcgatcaatgatagtttaca 44729133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 29 - 412
Target Start/End: Complemental strand, 49053930 - 49053557
Alignment:
Q  29 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 127  Q
    |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||  || ||||||| ||||||| || |||||| ||||    
T  49053930 gcgaatccccttcaggatacaatgaaatccttgacgtgacttgcacattcacaccaagcatatcga-caatggtagtttacaaaataaagttctgccaat 49053832  T
Q  128 tcccctcgtgcactagagataaaaaagaatgatttagtataat-ttttgacagaatttcgactcacaagaatgtgattt--tgtctcta-ttttctgaat 223  Q
    | |||||||||||||||||  | |||||||||||||||||||| ||||| |||||||  ||| ||||| ||||||||||  |||||||| ||||| ||||    
T  49053831 ttccctcgtgcactagagaagagaaagaatgatttagtataattttttggcagaattatgacacacaacaatgtgattttatgtctctatttttcagaat 49053732  T
Q  224 acttttcaacctccaaaataactatctttatnnnnnnnnttatttcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatatt 323  Q
     ||||||  || ||| |||  |||| |||||        |||| || |||| |||||| | ||||||||||| ||||||||||| |||||| |||| |||    
T  49053731 tcttttctgccaccataatgtctatatttatataaaaacttatgtcctttggtgaagagacacaatcatttgaaagagtttgtttatgaatggttacatt 49053632  T
Q  324 gcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
                  ||||||||||||| | ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||    
T  49053631 --------------gcaatacaccttttcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctca 49053557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 30 - 412
Target Start/End: Complemental strand, 49061509 - 49061137
Alignment:
Q  30 cgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaatt 128  Q
    ||||||||||||||  |||||||||||||||||||||| ||| ||||||||||||| |||||||  || ||||||| |||| || || ||| ||||||||    
T  49061509 cgaatccccttcagaatacaatggaatccttgacgtgatttgcacattcacaccaaacatatcga-caatggtagtttacagaataaagttttgtcaatt 49061411  T
Q  129 cccctcgtgcactagagataaaaaagaatgatttagtataattttt-gacagaatttcgactcacaagaatgtgattt--tgtctcta-ttttctgaata 224  Q
     ||||||||||||||||| || |||||||||||||||||||||||| | |||||||  ||| ||||| ||||||||||  |||||||| ||||||||||     
T  49061410 tccctcgtgcactagagaaaagaaagaatgatttagtataatttttcggcagaattatgacacacaacaatgtgattttatgtctctatttttctgaatt 49061311  T
Q  225 cttttcaacctccaaaataactatctttatnnnnnnnnttatttcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattg 324  Q
    ||||||  || | | |||  || | |||||        |||| || |||  |||||| | ||||| ||||| |||| |||||| |||||| |||| |||     
T  49061310 cttttctgccactataatgtctctatttatatagaaacttatgtcctttcgtgaagagacacaattatttgaaagaatttgtttatgaatggttacatt- 49061212  T
Q  325 cttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
                 ||||||||||| | | ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||    
T  49061211 -------------gcaatacacctattcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctca 49061137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 42263434 - 42263583
Alignment:
Q  53 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 152  Q
    |||| ||||| ||||||| ||||||| || |||| |||||  || || || | |||||||||| ||| |||| ||| | ||||||||||||||| || ||    
T  42263434 aatctttgacatgacttgcacattcatactaagcgtatcgaacaatgttaatttacaaaacaaagttttgtcgatttctctcgtgcactagagaaaagaa 42263533  T
Q  153 agaatgatttagtataatttttgacagaatttcgactcacaagaatgtga 202  Q
    |||||||| |||||| ||||| | ||| |||| |||||||||||||||||    
T  42263534 agaatgatatagtattattttaggcagtattttgactcacaagaatgtga 42263583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 50059606 - 50059453
Alignment:
Q  53 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 152  Q
    |||||| |||||||||| || ||||||| | | | ||||| ||| || |||| || | || || ||||||| |||| | ||||||||||||||| || ||    
T  50059606 aatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataa 50059507  T
Q  153 agaatgatttagtataatttttgacagaatttcgactcacaagaatgtgatttt 206  Q
    ||||||||| ||||| |||||| ||||||||| || ||||||||||||| ||||    
T  50059506 agaatgattcagtattattttttacagaattttgattcacaagaatgtgttttt 50059453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 403
Target Start/End: Complemental strand, 50059371 - 50059265
Alignment:
Q  297 aagagtttgttcatgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatatt 396  Q
    ||||| ||||| | |||| |||| |||||||  || |||| ||| ||||||| | | ||| || ||||||||||||| | ||||| ||||||||||||||    
T  50059371 aagagcttgtttacgaatggttacattgctttgatgttcaagcattacacctcttcactataatgtctctatttaacgactgcaattttttaaatatatt 50059272  T
Q  397 ttggaaa 403  Q
    |||||||    
T  50059271 ttggaaa 50059265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 52282015 - 52282168
Alignment:
Q  52 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaatt--cccctcgtgcactagagataa 149  Q
    ||||| ||||| ||||||| | |||||||||||||  |||| ||| ||||||| |||| || || ||| ||||||||   | ||| ||||||||||| ||    
T  52282015 gaatctttgacatgacttgcatattcacaccaagcgcatcgatcaatggtagtttacagaataaagttatgtcaatttctctctcatgcactagagaaaa 52282114  T
Q  150 aaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgat 203  Q
     ||||||||||||| ||| |||||  | |||||||  ||||| || ||||||||    
T  52282115 gaaagaatgatttaatattattttcaatagaatttaaactcataaaaatgtgat 52282168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 10917551 - 10917477
Alignment:
Q  134 cgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgt 208  Q
    ||||||||||||| || ||  |||||||| |||| ||||| | ||||| || |||| ||||||||||||||||||    
T  10917551 cgtgcactagagaaaagaagaaatgattttgtattattttcggcagaactttgacttacaagaatgtgattttgt 10917477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 17458501 - 17458409
Alignment:
Q  75 ttcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 167  Q
    |||| ||||||| ||||| ||| || |||| ||||||| || ||| | || ||||  ||||||||||||||| |  |||||||||||||||||    
T  17458501 ttcaaaccaagcgtatcgatcaatgatagtttacaaaataaagttatctctattcatctcgtgcactagagaaatgaaagaatgatttagtat 17458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 29 - 412
Target Start/End: Complemental strand, 52653910 - 52653526
Alignment:
Q  29 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 127  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||  |||||  || ||||||| |||| || || |||||||||||    
T  52653910 gcgaatccccttcaggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcga-caatggtagtttacagaataaagttctgtcaat 52653812  T
Q  128 tcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctctat-tttctgaatact 226  Q
    |  |||||||||||||||| ||  ||||||||||||||||||||||   ||||||||  |||||||| ||||| ||||| | || || || |||||| ||    
T  52653811 tttcctcgtgcactagagaaaagtaagaatgatttagtataattttcagcagaatttaaactcacaacaatgtaattttctgtcgatattactgaattct 52653712  T
Q  227 tttcaacctccaaaataactatctttatnnnnnnnnttatttcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgct 326  Q
    ||||  |||||||| |  || | | |||        || | || |||| |||||| | |||| |||||  |||||||||||||||||| |||| |||||     
T  52653711 tttctgcctccaaagtgtctttgtctatagagaaacttgtgtcctttggtgaagagacacaaccatttaaaagagtttgttcatgaatggttacattgca 52653612  T
Q  327 tcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
    |||||| |||  |||||||||||| | ||||||||| | ||||||| ||||||||||||  |||||||||||||||||||||||||    
T  52653611 tcaattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgcaactttccaaatatattttggaaatttctctca 52653526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 40574287 - 40574473
Alignment:
Q  23 atatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttct 121  Q
    ||||||||||||  |||||||| ||| |||||||| ||||||||||||| |||||||||| |||| ||||  ||| || |||| |||| || || |||||    
T  40574287 atatcagcgaattaccttcaggatactatggaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttct 40574386  T
Q  122 gtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgt 208  Q
    ||||||| | ||||||||||||||| || ||||||||||||| ||| ||||| | |||||||| |||||||||||||||||||||||    
T  40574387 gtcaatttctctcgtgcactagagaaaagaaagaatgatttaatattattttcggcagaattttgactcacaagaatgtgattttgt 40574473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 292 - 410
Target Start/End: Original strand, 50914652 - 50914771
Alignment:
Q  292 tttggaagagtttgtt-catgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaa 390  Q
    |||||||||||||||| ||||||| |||  |||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  50914652 tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaa 50914751  T
Q  391 tatattttggaaatttctct 410  Q
    ||||||||| ||||||||||    
T  50914752 tatattttgaaaatttctct 50914771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 33709963 - 33709792
Alignment:
Q  32 aatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcc 130  Q
    ||||||||| ||| ||| || ||||||||||||||||||| ||||||||||||||| |||||  || ||||||| |||| || || |||||||||| | |    
T  33709963 aatcccctttaggatacgatagaatccttgacgtgacttgcacattcacaccaagcgtatcga-caatggtagtttacagaataaagttctgtcaaattc 33709865  T
Q  131 cctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgat 203  Q
     || |||||||||||| || ||||||||||||||||||||||| | || ||||| ||||||| ||||||||||    
T  33709864 tctggtgcactagagaaaagaaagaatgatttagtataattttcggcaaaatttagactcaccagaatgtgat 33709792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 31362247 - 31362400
Alignment:
Q  53 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 152  Q
    |||||||||||  |||| |||||||||||||| | ||||| ||  | ||||| ||||||| || ||||||||||||  |||||||||||| | | || ||    
T  31362247 aatccttgacggaacttatacattcacaccaaacgtatcgatcgatagtagtttacaaaataaagttctgtcaattttcctcgtgcactaaaaaaaataa 31362346  T
Q  153 agaatgatttagtataatttttgacagaatttcgactcacaagaatgtgatttt 206  Q
    | ||  ||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  31362347 aaaaaaatttagtattattttcgacagaattttgactcacaagaatgtgatttt 31362400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 2257446 - 2257515
Alignment:
Q  339 caatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttct 408  Q
    ||||||| |||| ||||||| ||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  2257446 caatacatcttttctctaaatggtctctatttaagcattgcaacttttcaaatatatttttgaaatttct 2257515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 23686072 - 23686027
Alignment:
Q  367 atttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
    |||||||||||||||||||  |||||||||||||||||||||||||    
T  23686072 atttaaccattgcaactttccaaatatattttggaaatttctctca 23686027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 24058309 - 24058264
Alignment:
Q  367 atttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
    |||||||||||||||||||  |||||||||||||||||||||||||    
T  24058309 atttaaccattgcaactttccaaatatattttggaaatttctctca 24058264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 23686141 - 23686089
Alignment:
Q  57 cttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 109  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  23686141 cttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttaca 23686089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 24058378 - 24058326
Alignment:
Q  57 cttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 109  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  24058378 cttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttaca 24058326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 33709631 - 33709572
Alignment:
Q  355 taaaaggtctctatttaaccattgcaactttttaaata---tattttggaaatttctctca 412  Q
    |||||||||||| ||||||||||||||||||  |||||   ||||||||||||||||||||    
T  33709631 taaaaggtctct-tttaaccattgcaactttccaaatatattattttggaaatttctctca 33709572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 409
Target Start/End: Original strand, 12239589 - 12239983
Alignment:
Q  15 aaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaac 113  Q
    |||||||||| || |||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| |||||  || ||||||| | || ||     
T  12239589 aaaagggtatgtcggcgaatccccttcaggatacgatgaaatccttgacgtgacttgcacattcacaccaagcgtatcga-caatggtagtttccagaat 12239687  T
Q  114 aatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctcta 213  Q
    || ||| ||||||||   || ||  ||||||||||| ||||||| ||||| ||| ||||| | |||||||   || ||||| ||||||||||| | ||||    
T  12239688 aaagttttgtcaatttatctagtatactagagataagaaagaataatttaatattattttcggcagaattctaacacacaacaatgtgattttctatcta 12239787  T
Q  214 t-tttctgaatacttttcaacctccaaaataactatctttatnnnnnnnnttatttcatttgatgaagaaaaacaatcatttggaagagtttgttcatga 312  Q
    | ||||| ||| |||||| ||||||||| |  || | |||||        |||| || |||||| ||||    ||| |||||| ||||||||||||||||    
T  12239788 tatttcttaattcttttctacctccaaagtgtctttatttatagagaaacttatatcctttgatcaagagccgcaaccatttgaaagagtttgttcatga 12239887  T
Q  313 attgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttctc 409  Q
    || |||| ||||| |||||| ||| ||||||||| ||| | ||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||    
T  12239888 atggttacattgcatcaattgtcaagcaatacactttttcactaaaaggtctttctttaaccattgcaac-tttcaaatatattttggaaatttctc 12239983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 52 - 230
Target Start/End: Original strand, 34091475 - 34091655
Alignment:
Q  52 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaa 151  Q
    ||||||||||||||||||| ||||||||||||| | |||   | | ||||||| ||||||  || ||||| |||||| | ||| |||| |||||| || |    
T  34091475 gaatccttgacgtgacttgcacattcacaccaatcgtatgaattaatggtagtttacaaagtaaagttctctcaatttctctcatgcattagagaaaaga 34091574  T
Q  152 aagaatgatttagtataatttttgacagaatttcgactcacaagaatgtga-ttttgtctcta-ttttctgaatacttttc 230  Q
    | |||||||||| ||| ||||| | | |||||| |||||| || ||||||| ||||||||||| ||||||||||| |||||    
T  34091575 atgaatgatttaatattattttcggcggaattttgactcataataatgtgatttttgtctctatttttctgaatatttttc 34091655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 24870505 - 24870385
Alignment:
Q  78 acaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgac 177  Q
    ||||||||| ||| | ||| || |||| |||| || || ||||| ||||||   ||||||||||||||| || ||||| | ||||||||| ||||||| |    
T  24870505 acaccaagcgtattgatcaatgatagtttacataataaagttctatcaatttttctcgtgcactagagaaaagaaagacttatttagtattatttttggc 24870406  T
Q  178 agaatttcgactcacaagaat 198  Q
    ||||||| | |||||||||||    
T  24870405 agaattttgtctcacaagaat 24870385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 24871477 - 24871395
Alignment:
Q  121 tgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgat 203  Q
    |||||||||| ||||||||||  ||| || | ||||||||||| ||| ||||| | |||||||| ||||||||| ||||||||    
T  24871477 tgtcaattcctctcgtgcacttaagaaaagagagaatgatttaatattattttcggcagaattttgactcacaataatgtgat 24871395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 30108293 - 30108346
Alignment:
Q  155 aatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgt 208  Q
    ||||||||||||| ||||| | || ||| | |||||||||||||||||||||||    
T  30108293 aatgatttagtattattttcggcataatgttgactcacaagaatgtgattttgt 30108346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 20464107 - 20463987
Alignment:
Q  53 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 152  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||| || | || |  |||| ||  ||||||||||| | ||||| || |||||  |  ||    
T  20464107 aatccttaacgagacttgcacattcacaccaagcatatcgatcaatgattgtttgtaaaataaatttctgtcaatttctctcgtacattagagtaagtaa 20464008  T
Q  153 agaatgatttagtataatttt 173  Q
    | ||||||||||||| |||||    
T  20464007 ataatgatttagtattatttt 20463987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 134 - 412
Target Start/End: Original strand, 24129428 - 24129707
Alignment:
Q  134 cgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctcta-ttttctgaatacttttcaa 232  Q
    ||||||||||||| || |||||| |||||||||| ||||||||| |||||| ||||||||| |||||||| || | |||| |||||| | |  ||||       
T  24129428 cgtgcactagagaaaagaaagaaagatttagtattatttttgacggaatttagactcacaaaaatgtgatgttctatctaattttcttacttattttttg 24129527  T
Q  233 cctccaaaataactatctttatnnnnnnnnttatttcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaatt 332  Q
    |||||| | |  || | |||||        |||| ||||||| | ||| |||| || ||||||||||||||||||||||||| |||| ||||||||||||    
T  24129528 cctccagagtgtctctatttatagagaaacttatgtcatttggttaaggaaaataaccatttggaagagtttgttcatgaatggttacattgcttcaatt 24129627  T
Q  333 ttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
     ||| ||||||||||||| ||| |||| | || |||||||||||||| ||||| |||||||||||||  |||||||||||    
T  24129628 atcaagcaatacacctttcctccaaaaagcctatatttaaccattgcgactttctaaatatattttgataatttctctca 24129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 48779825 - 48780014
Alignment:
Q  15 aaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaac 113  Q
    ||||||||||||| | |||||||||||||| ||| ||| |||| ||||||||||||| ||||||||||||||||||||  ||| || |||| || | ||     
T  48779825 aaaagggtatatcggtgaatccccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatcaatcaatgatagtttagagaat 48779924  T
Q  114 aatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgat 203  Q
    || ||| ||||| ||    |||||||||||||| || || |||||||||| ||| ||||| || ||||||| || | |||||||||||||    
T  48779925 aaagttatgtcagtttatgtcgtgcactagagaaaataatgaatgatttaatattattttcgatagaatttagaatgacaagaatgtgat 48780014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 303 - 412
Target Start/End: Complemental strand, 20251258 - 20251149
Alignment:
Q  303 ttgttcatgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaa 402  Q
    |||||||||||| |||| |||| ||||||| |||  |||||||| ||| ||||||||| |||||||||||| |||||||||||  |||||||||||  ||    
T  20251258 ttgttcatgaatagttacattgtttcaattatcaaacaatacactttttctctaaaagatctctatttaacaattgcaactttccaaatatattttaaaa 20251159  T
Q  403 atttctctca 412  Q
    ||||||||||    
T  20251158 atttctctca 20251149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 412
Target Start/End: Complemental strand, 122922 - 122831
Alignment:
Q  321 attgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
    |||| ||||||| ||| ||||||||| ||| |||||||| || |||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  122922 attgtttcaattgtcaagcaatacacattttctctaaaatgtttctatttaactattgcaacttttcaaatatactttggaaatttctctca 122831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 409
Target Start/End: Original strand, 48780111 - 48780222
Alignment:
Q  297 aagagtttgttcatgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaatatatt 396  Q
    |||| ||| ||||||||| ||||||||||||||||| |||  || || |||||| ||||||||| ||| | ||||| ||||||||||||  |||||||||    
T  48780111 aagaatttattcatgaatagttatattgcttcaattgtcaaacattataccttttctctaaaagatct-tgtttaatcattgcaactttccaaatatatt 48780209  T
Q  397 ttggaaatttctc 409  Q
    ||| |||||||||    
T  48780210 ttgaaaatttctc 48780222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 24391970 - 24391830
Alignment:
Q  29 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 127  Q
    |||||||||||||| | ||||||||||||||||  |||||||| |||| |||||||| | |||||  || || |||| |||| || || ||| |||||||    
T  24391970 gcgaatccccttcaagatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaat 24391873  T
Q  128 tcccctcgtgcactagagataaaaaagaatgatttagtataat 170  Q
    | | ||| ||||||||||| || ||||||||||||||||||||    
T  24391872 ttctctcatgcactagagaaaagaaagaatgatttagtataat 24391830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 20251523 - 20251370
Alignment:
Q  52 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaa 151  Q
    ||||| |||| ||| |||||||||||||| ||||  ||||| ||| || |||| |||| || || |||||||||||| | ||||||||||| ||| || |    
T  20251523 gaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgtgcactacagaaaaga 20251424  T
Q  152 aagaatgatttagta-taatttttgacagaa-tttcgactcacaagaatgtgat 203  Q
    || |||||||||||| |  ||||||||| || ||| ||| ||||||||||||||    
T  20251423 aataatgatttagtatttttttttgacataattttagacacacaagaatgtgat 20251370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 385
Target Start/End: Original strand, 1495028 - 1495110
Alignment:
Q  302 tttgttcatgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaacttt 385  Q
    ||||||||||||| ||||||||||||||| | | | ||  ||||||||| ||||||| ||||||| ||||||||||||||||||    
T  1495028 tttgttcatgaatggttatattgcttcaactgtaaagctttacaccttttctctaaatggtctct-tttaaccattgcaacttt 1495110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 1516576 - 1516664
Alignment:
Q  292 tttggaagagtttgttcatgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaa 381  Q
    |||| |||| ||||||||||||| |||||||||| ||| || | | ||| ||||||||| |||||||| |||||| ||||||||||||||    
T  1516576 tttgaaagattttgttcatgaatggttatattgcgtcatttctaaagcactacaccttttctctaaaatgtctct-tttaaccattgcaa 1516664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 46324485 - 46324440
Alignment:
Q  169 atttttgacagaatttcgactcacaagaatgtgattttgtctctat 214  Q
    ||||| || ||||||||||||||||||||||||||||||| |||||    
T  46324485 attttcgaaagaatttcgactcacaagaatgtgattttgtgtctat 46324440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 19226769 - 19226818
Alignment:
Q  365 ctatttaaccattgcaactttttaa--atatattttggaaatttctctca 412  Q
    |||||||||||||||||||||  ||  |||||||||||||||||||||||    
T  19226769 ctatttaaccattgcaactttccaaatatatattttggaaatttctctca 19226818  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 27538195 - 27538252
Alignment:
Q  151 aaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgt 208  Q
    ||||||||||||||||| ||||| | ||||||||  || |||||||||||||| ||||    
T  27538195 aaagaatgatttagtattattttcggcagaattttcacccacaagaatgtgatgttgt 27538252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 263 - 412
Target Start/End: Complemental strand, 36203017 - 36202868
Alignment:
Q  263 ttatttcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggt 362  Q
    |||| ||||||| |||||| ||| || | |||  |||||||||||||||||| |||| |||| ||||||| ||| ||| ||||||||| |||||||||||    
T  36203017 ttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatggttacattgattcaattgtcaagcattacaccttttctctaaaaggt 36202918  T
Q  363 ctctatttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
    |||| ||||||||||||||||||| |||||||||||  ||||||||||||    
T  36202917 ctctttttaaccattgcaacttttcaaatatattttaaaaatttctctca 36202868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 29006622 - 29006447
Alignment:
Q  29 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgt-acaaaacaatgttctgtcaa 126  Q
    |||||||| ||||||  |||||||||||||||||| |||| |  ||||||||||||||| |||||| || || |||| | ||| || || ||||||||||    
T  29006622 gcgaatcctcttcagaatacaatggaatccttgacatgacatacacattcacaccaagcgtatcgt-caatgttagttttacagaataaagttctgtcaa 29006524  T
Q  127 ttcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgat 203  Q
     |   ||||||||||||| | || || |||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  29006523 cttatctcgtgcactagaaaaaagaatgaatgatttagtataatttttagcagaatttagactcacaagaatgtgat 29006447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 9851409 - 9851740
Alignment:
Q  15 aaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaac 113  Q
    ||||||||||| | |||||||||||||| | ||| ||||||| ||| | |||| ||| ||||||||||||||| |||||  || ||||  | |||| ||     
T  9851409 aaaagggtataccggcgaatccccttcaagatacgatggaatacttaatgtgatttgcacattcacaccaagcgtatcga-caatggtgttttacagaat 9851507  T
Q  114 aatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctcta 213  Q
    || ||| |||||  | | || |||||||||||| || ||||| ||||||||||| ||||||| |||||||| ||||||||| ||||||| ||| | || |    
T  9851508 aaagttttgtcacattctcttgtgcactagagaaaagaaagactgatttagtattatttttggcagaattttgactcacaataatgtgaatttctatcca 9851607  T
Q  214 t-tttctgaatacttttcaacctccaaaataactatctttatnnnnnnnnttatttcatttgatgaagaaaaacaatcatttggaagagtttgttcatga 312  Q
    | ||||||| | ||||||  ||||||||||  || | ||||         |||| || |||| |||||| ||| || ||||||  |||||||||| ||||    
T  9851608 tgtttctgacttcttttctgcctccaaaatgtctctatttacagagaaacttatgtcttttggtgaagagaaataaccatttgacagagtttgtttatga 9851707  T
Q  313 attgttatattgcttcaattttcacgcaataca 345  Q
    || || | |||||||||||| ||| ||||||||    
T  9851708 atggtcagattgcttcaattgtcaagcaataca 9851740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 36203209 - 36203051
Alignment:
Q  47 caatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagaga 146  Q
    |||| ||||||||||||||||||| || |||||| ||||  |||| | || ||||||  ||||||| || |||||| ||| | | ||||| ||||| |||    
T  36203209 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatc-tgcaatggtagcttacaaaataaagttctgacaaattctctcgtacactaaaga 36203111  T
Q  147 taaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgatttt 206  Q
      | || |||| ||||||||||||||| | |||||||| ||||||||  |||||||||||    
T  36203110 agagaacgaataatttagtataattttcggcagaatttagactcacaccaatgtgatttt 36203051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 413
Target Start/End: Original strand, 11043019 - 11043140
Alignment:
Q  292 tttggaagagtttgttcatgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccattgcaactttttaaat 391  Q
    |||| |||||||||||||||||| | || |||| || |||   ||  || ||||||||| ||||||||| ||| |||||||||  || ||||||| ||||    
T  11043019 tttgaaagagtttgttcatgaatggctagattgattaaatggacaaacattacaccttttctctaaaagatctttatttaaccgatgaaacttttcaaat 11043118  T
Q  392 atattttggaaatttctctcag 413  Q
    |||||||| ||||||| |||||    
T  11043119 atattttgaaaatttcactcag 11043140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 29006280 - 29006222
Alignment:
Q  353 tctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
    |||||||| ||||| |||||  |||||||||||| || ||||||||||||||||||||||    
T  29006280 tctaaaagatctct-tttaattattgcaacttttcaattatattttggaaatttctctca 29006222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 15205241 - 15205185
Alignment:
Q  290 catttggaagagtttgttcatgaattgttatattgcttcaattttcacgcaatacac 346  Q
    |||||| ||||||||||||||||||  ||| |||||||||||| ||  |||||||||    
T  15205241 catttgtaagagtttgttcatgaatgattacattgcttcaattctcgtgcaatacac 15205185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 14218851 - 14219043
Alignment:
Q  15 aaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaac 113  Q
    ||||| ||||||||  ||||| |||||| | ||| || |||||  |||| |||| |||||||||||||||| | ||||  ||| || |||| |||||||     
T  14218851 aaaagagtatatcaatgaatctccttcaagatactatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaat 14218950  T
Q  114 aatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgatttt 206  Q
    || ||||| ||||||  |||||||||||||||| || ||||||||||||||||| ||||||  || ||||| ||||||||| |||||||||||    
T  14218951 aaagttctttcaattttcctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgatttt 14219043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 412
Target Start/End: Original strand, 34681329 - 34681464
Alignment:
Q  277 gaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaattttcacgcaatacacctttgctctaaaaggtctctatttaaccat 376  Q
    ||||||||||||   ||| ||||||||||||||| ||| || | |||||||||||| |||  || ||||| ||| ||||||||||| | | |||||||||    
T  34681329 gaagaaaaacaactcttttgaagagtttgttcatcaatggtaacattgcttcaattgtcaaacattacactttttctctaaaaggtttatgtttaaccat 34681428  T
Q  377 tgcaactttttaaatatattttggaaatttctctca 412  Q
    |||||| ||  |||||||||||| ||||||||||||    
T  34681429 tgcaacattccaaatatattttgaaaatttctctca 34681464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 17862450 - 17862390
Alignment:
Q  159 atttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctctattttct 219  Q
    ||||| ||| |||||||||| ||||| || ||||||||||| |||||||| ||||||||||    
T  17862450 atttaatattatttttgacaaaattttgagtcacaagaatgagattttgtatctattttct 17862390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 217861 - 217708
Alignment:
Q  53 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 152  Q
    ||||||||| | |||||| ||||||||||||||  ||||| ||| ||||||| ||||||| ||||||||| ||||| | |||||| |||||||| || ||    
T  217861 aatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaa 217762  T
Q  153 agaatgatttagtataatttttgacagaatttcgactcacaagaatgtgatttt 206  Q
    ||||| |||||| || ||||| | |||||||  ||| ||||| |||||||||||    
T  217761 agaattatttagaattattttcggcagaattctgacacacaacaatgtgatttt 217708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 215699 - 215646
Alignment:
Q  356 aaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttctc 409  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  215699 aaaagatctctatttaaccattgcaactttctaaatatattttggaaatttctc 215646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 412
Target Start/End: Complemental strand, 217572 - 217512
Alignment:
Q  352 ctctaaaaggtctctatttaaccattgcaactttttaaatatattttggaaatttctctca 412  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||    
T  217572 ctctaaaagatctctatttaaccattgcaacttttttattatatttcggaaatttctctca 217512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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