View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6781_high_5 (Length: 464)
Name: NF6781_high_5
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 32703681 - 32703426
Alignment:
| Q |
1 |
tatgaaaactctaaatgcaactatcttattggactccaaagggagatcgttttgaaacattgtgctcaatttagctaagtcctcctcnnnnnnnnnnnnt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32703681 |
tatgaaaactctaaatgcaactatcttattggactcaaaagggagatcgttttgaaacattgtgctcaatttagctaagtcctcctcaaaaaagaaaaat |
32703582 |
T |
|
| Q |
101 |
gatttgatgaagaagaaccaacatcaacaaaataccttttcatttatccatctaggactcgaacttgggaagaatgtgactgagatagaaaggtgatatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32703581 |
gatttgatgaagaagaaccaacatcaacaaaataccttttcatttatccatctaggactcgaacttgggaagaatgtgactgagatagaaaggtgatatg |
32703482 |
T |
|
| Q |
201 |
ttttgatttttgagttaagaattcctccaaagaatgagtaaacaaacactctccaa |
256 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32703481 |
ttttgatttttgagttacgaattcctccaaagaatgagtaaacaaacactctccaa |
32703426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 287 - 399
Target Start/End: Complemental strand, 32703428 - 32703317
Alignment:
| Q |
287 |
caagagagataagggattccataatagatttgttaaaggaggnnnnnnnnctaccttcataatagagatctaagaaaagttatagctggaagttttccct |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32703428 |
caagagagataagggattccataatagatttgctaaaggaggaaaaaaa-ctaccttcataatagagatctaagaaaagttatagctggaagttttccct |
32703330 |
T |
|
| Q |
387 |
tttcgcacatcat |
399 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32703329 |
tttcgcacatcat |
32703317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University