View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_low_1 (Length: 834)
Name: NF6781_low_1
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_1 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 237 - 671
Target Start/End: Complemental strand, 13392426 - 13391999
Alignment:
| Q |
237 |
atagaaaaggaaagtgcttacctaataagcttttctacttcttcctgtcttatttgtaaagaaataaatnnnnnnnnncttatcaagagttaccaaataa |
336 |
Q |
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| T |
13392426 |
atagaaaaggaaagtgcttacctaataagcttttctacttcttcctgtcttatttgtaaagaaataaaaaaaaaaa---ttatcaagagttaccaaataa |
13392330 |
T |
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| Q |
337 |
taaactaatctaaaacactattttaagtaaacaagctacaattcaatttattttaaacctgtaaattgttctaaatgttggatcccacctaatattgttt |
436 |
Q |
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| T |
13392329 |
taaactaatctaaaacactattttaagtaaacaagctacaattcaatttattttaaacctgtaaattgttctaaatgttggatcccacctaatattgttt |
13392230 |
T |
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| Q |
437 |
tatccattagagttttcaaattgcatgtcattgtcctaacattttgtacggctcatttacaagccttccaatcacaaaatgcaatctgtgtcatgaacac |
536 |
Q |
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| T |
13392229 |
tatccattagagttttcaaattgcatgtcattgtcctaacattttgtacggctcatttacaagccttccaatcacaaaatgcaatctgtgtcatgaacac |
13392130 |
T |
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| Q |
537 |
tttgtttaaataccaaacaaataggatctggttatacactcactcactagtttcaatttgcactacttttttcccctaacaaatatgattatctaacaaa |
636 |
Q |
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| T |
13392129 |
tttgtttaaataccaaacaaataggatctggttatacact----cactagtttcaatttgcactacttttttcccctaacaaatatgattatctaacaaa |
13392034 |
T |
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| Q |
637 |
cttattaaaaagttagaatagtactactatgaaca |
671 |
Q |
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| T |
13392033 |
attattaaaaagttagaatagtactactatgaaca |
13391999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 13392639 - 13392498
Alignment:
| Q |
23 |
tgaggtggaaaaatgaataagagtgagagggacaaaaaatagccgccaatgaatttgcaacacacaaaaattcatccaannnnnnnatgcatatgttatg |
122 |
Q |
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| T |
13392639 |
tgaggtggaaaaatgaataagagtgagagggacaaaaaatagccaccaatgaatttgcaacacacaaaaattcatccaa-ttttttatgcatatgttatg |
13392541 |
T |
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| Q |
123 |
catgctaattgctaaggtattggactatccaatttgctcttgg |
165 |
Q |
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| T |
13392540 |
catgctaattgctaaggtattggacaatccaatttgctcttgg |
13392498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 672 - 811
Target Start/End: Complemental strand, 13391961 - 13391819
Alignment:
| Q |
672 |
tattttgagctagcaagagaggcttgtgttggaatttaacgtaaatttcttcaagaatattaacctacttagcttgttttggtggtgttgccttgagact |
771 |
Q |
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| T |
13391961 |
tatttagagctagcaagagaggcttgtgttggaatttaacgtaaattttttc---aaaattaacctacttaacttgttctggtaatgttatcttaagact |
13391865 |
T |
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| Q |
772 |
ttaaagtgtgttac------tttcgaagtctcaactttgattcttt |
811 |
Q |
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| T |
13391864 |
ttaaagtgcgttaccttcgatttcaaagtctcaactttgattcttt |
13391819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 728 - 814
Target Start/End: Complemental strand, 29592 - 29506
Alignment:
| Q |
728 |
atattaacctacttagcttgttttggtggtgttgccttgagactttaaagtgtgttactttcgaagtctcaactttgattctttctg |
814 |
Q |
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| T |
29592 |
atattaatctacttaggttggtatggtggtgttcgcttgagactttggagtgtgtttctctcaaagtctcatgtttgattctctctg |
29506 |
T |
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