View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6781_low_12 (Length: 346)

Name: NF6781_low_12
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6781_low_12
NF6781_low_12
[»] chr7 (18 HSPs)
chr7 (1-192)||(7403408-7403598)
chr7 (253-346)||(7403667-7403760)
chr7 (82-192)||(3920999-3921108)
chr7 (51-183)||(13036177-13036309)
chr7 (262-335)||(3920870-3920943)
chr7 (51-184)||(11685332-11685465)
chr7 (71-130)||(37114304-37114363)
chr7 (94-180)||(30108857-30108943)
chr7 (56-122)||(48311418-48311484)
chr7 (57-180)||(34692431-34692554)
chr7 (64-183)||(34784308-34784427)
chr7 (64-127)||(48850924-48850987)
chr7 (64-130)||(23904971-23905037)
chr7 (64-130)||(38549895-38549961)
chr7 (64-129)||(22155508-22155573)
chr7 (64-129)||(22211423-22211488)
chr7 (64-129)||(24226929-24226994)
chr7 (57-173)||(4321382-4321498)
[»] chr2 (14 HSPs)
chr2 (56-192)||(2359382-2359517)
chr2 (64-180)||(363369-363485)
chr2 (51-130)||(26581350-26581429)
chr2 (94-184)||(40152256-40152346)
chr2 (71-183)||(17948622-17948734)
chr2 (57-180)||(11021825-11021948)
chr2 (57-180)||(28247851-28247974)
chr2 (94-180)||(38149750-38149836)
chr2 (78-183)||(4047653-4047758)
chr2 (64-184)||(39456455-39456575)
chr2 (64-186)||(42517875-42517997)
chr2 (71-180)||(7744953-7745062)
chr2 (64-129)||(16764227-16764292)
chr2 (64-128)||(34400684-34400748)
[»] chr8 (26 HSPs)
chr8 (51-180)||(15684048-15684177)
chr8 (64-184)||(11719746-11719866)
chr8 (51-181)||(11790497-11790627)
chr8 (51-183)||(17807313-17807445)
chr8 (57-184)||(10770636-10770763)
chr8 (51-130)||(15562761-15562840)
chr8 (255-346)||(15683888-15683979)
chr8 (71-130)||(29693984-29694043)
chr8 (64-184)||(42943075-42943195)
chr8 (64-130)||(3152338-3152404)
chr8 (64-129)||(8608613-8608678)
chr8 (57-186)||(10269213-10269342)
chr8 (70-183)||(22273555-22273668)
chr8 (64-129)||(41824315-41824380)
chr8 (64-180)||(9186316-9186432)
chr8 (95-183)||(25402522-25402610)
chr8 (95-183)||(25707031-25707119)
chr8 (57-173)||(28432518-28432634)
chr8 (57-180)||(40019448-40019571)
chr8 (64-130)||(13484884-13484950)
chr8 (70-184)||(41041032-41041146)
chr8 (262-327)||(11719608-11719673)
chr8 (64-129)||(26239083-26239148)
chr8 (64-129)||(33707581-33707646)
chr8 (64-128)||(27692454-27692518)
chr8 (61-109)||(40338208-40338256)
[»] chr4 (18 HSPs)
chr4 (66-182)||(28100865-28100981)
chr4 (64-184)||(2691684-2691804)
chr4 (51-183)||(20820290-20820422)
chr4 (257-336)||(26397784-26397863)
chr4 (64-186)||(11254376-11254498)
chr4 (64-185)||(26397596-26397716)
chr4 (262-341)||(28100711-28100790)
chr4 (57-180)||(39190495-39190618)
chr4 (57-180)||(39922683-39922806)
chr4 (57-180)||(42879576-42879699)
chr4 (70-183)||(11641744-11641857)
chr4 (57-180)||(5485728-5485851)
chr4 (57-180)||(39084828-39084951)
chr4 (94-180)||(32653344-32653430)
chr4 (94-172)||(43778689-43778767)
chr4 (64-130)||(54387551-54387617)
chr4 (94-178)||(10544694-10544778)
chr4 (64-128)||(43520726-43520790)
[»] scaffold0722 (2 HSPs)
scaffold0722 (57-184)||(4446-4572)
scaffold0722 (257-336)||(4300-4379)
[»] chr1 (16 HSPs)
chr1 (51-183)||(18058121-18058253)
chr1 (253-335)||(42558110-42558192)
chr1 (65-184)||(2870726-2870845)
chr1 (253-336)||(3369582-3369665)
chr1 (57-180)||(5784543-5784666)
chr1 (64-130)||(31237193-31237259)
chr1 (262-328)||(35009542-35009608)
chr1 (57-118)||(42558303-42558364)
chr1 (70-130)||(51894941-51895001)
chr1 (70-121)||(3369789-3369840)
chr1 (94-180)||(11152837-11152923)
chr1 (64-130)||(37087786-37087851)
chr1 (64-129)||(8169183-8169248)
chr1 (64-129)||(33599593-33599658)
chr1 (64-129)||(34776944-34777009)
chr1 (64-129)||(45045286-45045351)
[»] chr5 (10 HSPs)
chr5 (51-128)||(27077124-27077201)
chr5 (57-184)||(1344485-1344612)
chr5 (65-180)||(24497759-24497874)
chr5 (94-184)||(6116610-6116700)
chr5 (64-130)||(41494208-41494274)
chr5 (253-336)||(27077321-27077404)
chr5 (61-129)||(17575540-17575608)
chr5 (72-184)||(28821748-28821860)
chr5 (57-180)||(42619581-42619704)
chr5 (64-129)||(24540171-24540236)
[»] chr3 (15 HSPs)
chr3 (78-192)||(35861823-35861938)
chr3 (57-182)||(32842721-32842846)
chr3 (61-130)||(24846220-24846289)
chr3 (51-109)||(23876036-23876094)
chr3 (64-130)||(30598711-30598777)
chr3 (64-130)||(46113738-46113804)
chr3 (64-130)||(51686027-51686093)
chr3 (83-130)||(13466804-13466851)
chr3 (102-180)||(37865676-37865754)
chr3 (64-122)||(42282149-42282207)
chr3 (64-129)||(2661523-2661588)
chr3 (64-129)||(7883703-7883768)
chr3 (64-129)||(35904199-35904264)
chr3 (64-129)||(53188151-53188216)
chr3 (64-128)||(43766698-43766762)
[»] chr6 (9 HSPs)
chr6 (57-182)||(17936214-17936339)
chr6 (61-184)||(11356799-11356922)
chr6 (51-182)||(14337973-14338104)
chr6 (57-180)||(17950853-17950976)
chr6 (57-180)||(35174674-35174797)
chr6 (57-180)||(4289710-4289833)
chr6 (64-183)||(7371453-7371572)
chr6 (64-183)||(20524984-20525102)
chr6 (64-185)||(33277100-33277220)
[»] scaffold0345 (1 HSPs)
scaffold0345 (61-184)||(1160-1283)
[»] scaffold0920 (1 HSPs)
scaffold0920 (70-130)||(1114-1174)
[»] scaffold0564 (1 HSPs)
scaffold0564 (64-183)||(9547-9666)
[»] scaffold0070 (1 HSPs)
scaffold0070 (102-184)||(57669-57751)
[»] scaffold0058 (1 HSPs)
scaffold0058 (64-129)||(6852-6917)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 7403408 - 7403598
Alignment:
Q  1 tcaaagaaattttggggatttttggttttcagatttcaatnnnnnnnnnnttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaat 100  Q
    |||| |||||||||||||||||||| |||||||||||||           |||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  7403408 tcaatgaaattttggggatttttggatttcagatttcaa-aaaaaaaaaattaggttttgaaattttcagaattggagaagaacgttgtcatcaattaat 7403506  T
Q  101 ggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaagagctgatgtat 192  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||    
T  7403507 ggaagaaatcttggagattttggactctagattacatattgtaaaactagggttccaatttaatagatttgggaaagaaagagccgatgtat 7403598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 7403667 - 7403760
Alignment:
Q  253 gtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaacacaccatgtca 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7403667 gtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttctgagaggttaacacaccatgtca 7403760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 3921108 - 3920999
Alignment:
Q  82 aacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaag 181  Q
    ||||||||||| |||||||||||||||| |||| ||||||| ||| ||||||||  |||||| ||  | ||||||||||| ||||||| ||| |||||||    
T  3921108 aacgttgtcatgaattaatggaagaaattttggggattttgtactatagattacagattgtagaatta-ggtttcaattttatagattcggggaagaaag 3921010  T
Q  182 agctgatgtat 192  Q
    ||| |||||||    
T  3921009 agccgatgtat 3920999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 183
Target Start/End: Original strand, 13036177 - 13036309
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccag 150  Q
    |||| |||| || ||||| ||||||| ||||||| |||||||||||||||||||||||| |||| ||||||| ||||||| | ||  ||| |||||  ||    
T  13036177 ttagatttttaagttttttgaattggggaagaactttgtcatcaattaatggaagaaattttggggattttgaactctaggtgacaaattataaaataag 13036276  T
Q  151 ggtttcaatttaatagatttgggaaagaaagag 183  Q
    | || ||| || ||| ||||||| |||||||||    
T  13036277 gattccaaatttatatatttggggaagaaagag 13036309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 335
Target Start/End: Complemental strand, 3920943 - 3920870
Alignment:
Q  262 aattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaac 335  Q
    |||||||||||||||||  | |||||||| || |||||| ||||||||||||| ||| | ||||||||||||||    
T  3920943 aattttgtcactttcgatcatattagtctgtgcttgtgtagcatttgacatgacaagacatgtgagaggttaac 3920870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 11685332 - 11685465
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccag 150  Q
    |||| |||||||  |||| ||||||| ||||||||||  |   ||||| || ||||||| |||||||||||||| | ||||||||  |||||||||  ||    
T  11685332 ttaggttttgaagctttttgaattggtgaagaacgttacctctaattattgaaagaaattttggagattttggagtgtagattacagattgtaaaattag 11685431  T
Q  151 ggtttcaatttaatagatttgggaaagaaagagc 184  Q
    |||| |||||| ||| |||||||  |||||||||    
T  11685432 ggttccaattttatatatttgggggagaaagagc 11685465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 37114363 - 37114304
Alignment:
Q  71 aattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    |||||| ||||||| ||| |||||||| ||||||||||||| |||||||||| |||||||    
T  37114363 aattggggaagaacattgacatcaatttatggaagaaatctgggagattttgaactctag 37114304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 30108943 - 30108857
Alignment:
Q  94 aattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaa 180  Q
    ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |||||| ||| ||||||| ||||||    
T  30108943 aattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaattttatatatttggggaagaaa 30108857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 48311418 - 48311484
Alignment:
Q  56 ttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttg 122  Q
    |||| |||||||| ||||||| ||||||| |||||||||||||||| ||||||| |||  |||||||    
T  48311418 tttttaaattttttgaattggggaagaactttgtcatcaattaatgaaagaaattttgaggattttg 48311484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 34692431 - 34692554
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   ||  ||||| |||||||||  |||||||||||||| | |||||||   |||||||||  |||||| |    
T  34692431 tttggaattttttgatttggggaagaacgtgaccactaattattggaagaaaatttggagattttggagtgtagattaaacattgtaaaattagggttcc 34692530  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  34692531 aattttatatatttggggaagaaa 34692554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 34784427 - 34784308
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| ||||||||||  ||  ||||| ||  | |||| |||||||||||||| | |||||||   |||||||||  |||||| |||||| |    
T  34784427 ttttttgaattggggaagaacgttaccactaattattgacataaattttggagattttggagtgtagattaaagattgtaaaattagggttccaatttta 34784328  T
Q  164 tagatttgggaaagaaagag 183  Q
    || ||||||| |||||||||    
T  34784327 tatatttggggaagaaagag 34784308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 48850987 - 48850924
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactc 127  Q
    ||||| ||||||| ||||||| ||| |||||||||||||||||||| ||||  |||||| ||||    
T  48850987 ttttttgaattggggaagaactttggcatcaattaatggaagaaattttgggaattttgaactc 48850924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 23905037 - 23904971
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| |||||||    
T  23905037 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactctag 23904971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 38549961 - 38549895
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| |||  ||||||| ||||||||||| |||| ||||||| |||||||    
T  38549961 ttttttgaattggggaagaactttggtatcaattcatggaagaaattttggggattttgaactctag 38549895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 22155508 - 22155573
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| ||||||    
T  22155508 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactcta 22155573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 22211423 - 22211488
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| ||||||    
T  22211423 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactcta 22211488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 24226994 - 24226929
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| ||||||    
T  24226994 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactcta 24226929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 4321498 - 4321382
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  || ||||||||||| | ||||||||  |||||||||  |||||| |    
T  4321498 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaattttgagattttggagtgtagattacacattgtaaaattagggttcc 4321399  T
Q  157 aatttaatagatttggg 173  Q
    ||||| ||| |||||||    
T  4321398 aattttatatatttggg 4321382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 2359517 - 2359382
Alignment:
Q  56 ttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggttt 155  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||  |||||| |||| ||||||||||||||||| ||  |||||||||  |||||||    
T  2359517 ttttgaagtttttagaattggggaagaacgttgtcatcaattaatgatagaaattttgg-gattttggactctagatgacaaattgtaaaattagggttt 2359419  T
Q  156 caatttaatagatttgggaaagaaagagctgatgtat 192  Q
    |||||| ||||||||||| |||||| ||||| |||||    
T  2359418 caattttatagatttggggaagaaaaagctgttgtat 2359382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 363369 - 363485
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||||||||||||||  ||  ||||| |||||||||| |||  ||||||||| | |||||||| ||||||||||  |||||| |||||| |    
T  363369 ttttttgaattggagaagaacgttaccactaattattggaagaaattttgaggattttggagtgtagattacatattgtaaaattagggttccaatttta 363468  T
Q  164 tagatttgggaaagaaa 180  Q
    || ||||||| ||||||    
T  363469 tatatttggggaagaaa 363485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 26581429 - 26581350
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    |||| ||||||| ||||| ||||||| ||| | |||||||||||||||||||||||||| ||||  |||||| |||||||    
T  26581429 ttaggttttgaagttttttgaattggggaacagcgttgtcatcaattaatggaagaaattttgggaattttgaactctag 26581350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 40152256 - 40152346
Alignment:
Q  94 aattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaagagc 184  Q
    ||||||||||||||||  ||||||||||||||  ||||| |   |||| ||||   |||||||||||| ||||||||||||||||||||||    
T  40152256 aattaatggaagaaattgtggagattttggaccgtagatgagagattgaaaaatttgggtttcaattttatagatttgggaaagaaagagc 40152346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 17948622 - 17948734
Alignment:
Q  71 aattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagattt 170  Q
    |||||| ||||||||||  || |||||| |||||||| | ||||  |||||||| | | |||||   |||||||||  ||||||||||||| ||| ||||    
T  17948622 aattggggaagaacgttaccaccaattattggaagaatttttgggaattttggagtgtggattaaagattgtaaaattagggtttcaattttatacattt 17948721  T
Q  171 gggaaagaaagag 183  Q
    |||||||||||||    
T  17948722 gggaaagaaagag 17948734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 11021948 - 11021825
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |    
T  11021948 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttcc 11021849  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  11021848 aattttatatatttggggaagaaa 11021825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 28247851 - 28247974
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |    
T  28247851 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttcc 28247950  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  28247951 aattttatatatttggggaagaaa 28247974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 38149750 - 38149836
Alignment:
Q  94 aattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaa 180  Q
    ||||| |||||||||  ||||||||||| || | ||||||||  |||||||||  |||||| |||||| ||| ||||||||||||||    
T  38149750 aattattggaagaaaatttggagattttagagtgtagattacacattgtaaaattagggttccaattttatatatttgggaaagaaa 38149836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 4047653 - 4047758
Alignment:
Q  78 gaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaag 177  Q
    ||||||||  |||||  ||||||||||||| | || | || |||| ||||||||| ||  ||| |||||  ||||||||||||| ||||||||||| |||    
T  4047653 gaagaacgccgtcatatattaatggaagaagtttttgggactttgaactctagatgacaaattataaaattagggtttcaattttatagatttggggaag 4047752  T
Q  178 aaagag 183  Q
    ||||||    
T  4047753 aaagag 4047758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 39456455 - 39456575
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| |  | ||||||| ||||||| | ||  ||| ||| |  || ||||||| || |    
T  39456455 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgagggattttgaactctaggtgacaaattataacattagagtttcaaattta 39456554  T
Q  164 tagatttgggaaagaaagagc 184  Q
    || ||||||||||||||||||    
T  39456555 tatatttgggaaagaaagagc 39456575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 42517997 - 42517875
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||  | || ||||||| ||||||| | ||  ||| ||| |  |||||| ||| || |    
T  42517997 ttttttgaattggggaagaacattgacatcaattcatggaagaaaattgggggattttgaactctaggtgacaaattataacattagggttccaaattta 42517898  T
Q  164 tagatttgggaaagaaagagctg 186  Q
    || ||||||| ||||||||||||    
T  42517897 tatatttggggaagaaagagctg 42517875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 7744953 - 7745062
Alignment:
Q  71 aattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagattt 170  Q
    |||||| ||||||||||  ||  ||||| |||||||| | ||||  |||||||| | | |||||   |||||||||  ||||||||||||| ||| ||||    
T  7744953 aattggggaagaacgttaccactaattattggaagaatttttgggaattttggagtgtggattaaagattgtaaaattagggtttcaattttatacattt 7745052  T
Q  171 gggaaagaaa 180  Q
    ||||||||||    
T  7745053 gggaaagaaa 7745062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 16764227 - 16764292
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  16764227 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 16764292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 34400748 - 34400684
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactct 128  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| |||||    
T  34400748 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactct 34400684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 15684177 - 15684048
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccag 150  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |  |||||| ||||||||||||  |||||||||   |    
T  15684177 ttaggttttgaaatttttagaattggggaagaacgttgtcatcaattaatggaagaaatttttggaattttgaactctagattacagattgtaaaattgg 15684078  T
Q  151 ggtttcaatttaatagatttgggaaagaaa 180  Q
    |||| |||||| ||||||||||| ||||||    
T  15684077 ggttccaattttatagatttggggaagaaa 15684048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 11719866 - 11719746
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |   |||||||||   ||||| |||||| |    
T  11719866 ttttttgaattggggaagaacgttgtcatcaattaatggaagaaattttggggattttggactctaggtgataaattgtaaaattggggttccaatttta 11719767  T
Q  164 tagatttgggaaagaaagagc 184  Q
    |||||||||| ||||||||||    
T  11719766 tagatttggggaagaaagagc 11719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 11790497 - 11790627
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccag 150  Q
    |||| ||||||| ||||||||||| | |||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||| ||  ||||||||| ||     
T  11790497 ttaggttttgaagtttttagaatttgggaagaaggttgtcatcaattaatggaagaaattttggggattttggactatagataacaaattgtaaaatcaa 11790596  T
Q  151 ggtttcaatttaatagatttgggaaagaaag 181  Q
    |||| || ||| ||||||||| | |||||||    
T  11790597 ggttccatttttatagatttgaggaagaaag 11790627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 17807445 - 17807313
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccag 150  Q
    |||| ||||||| ||||| ||||||| |||||| ||||||||||||||||||||||| | |||| ||||||| ||||||| | ||  ||| |||||  ||    
T  17807445 ttaggttttgaagttttttgaattggggaagaatgttgtcatcaattaatggaagaatttttggggattttgaactctaggtgacaaattataaaattag 17807346  T
Q  151 ggtttcaatttaatagatttgggaaagaaagag 183  Q
    |||| ||| || ||| ||||| | |||||||||    
T  17807345 ggttccaaatttatatatttgtggaagaaagag 17807313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 10770763 - 10770636
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||||| ||||||||||||  ||| ||||||||||| |||||||  ||||||| |||| ||||||||| |   ||||||  |||||||||  |||| | |    
T  10770763 tttgaagtttttagaattgaggaaaaacgttgtcattaattaattaaagaaattttggggattttggagtgcggattacagattgtaaaattagggctcc 10770664  T
Q  157 aatttaatagatttgggaaagaaagagc 184  Q
    ||||| ||||||||||| ||||||||||    
T  10770663 aattttatagatttggggaagaaagagc 10770636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 15562840 - 15562761
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    |||| |||| || ||||| ||||||| |||||||  ||||||||||||||||||||||| |||| ||||||| |||||||    
T  15562840 ttaggtttttaagttttttgaattggggaagaactgtgtcatcaattaatggaagaaattttggggattttgaactctag 15562761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 15683979 - 15683888
Alignment:
Q  255 ccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaacacaccatgtca 346  Q
    |||||| ||||||||||||||| ||||||||| ||| || ||||||| ||| |||||||  ||| |||| |||||||||||| |||| ||||    
T  15683979 ccttggcaattttgtcactttctacaaaattaatctctgcttgtgtgacatctgacatggcaagccttgggagaggttaacagaccacgtca 15683888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 29693984 - 29694043
Alignment:
Q  71 aattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    |||||||||||||| |||||||||||| |||||||||||||||  ||||||| |||||||    
T  29693984 aattggagaagaactttgtcatcaattcatggaagaaatcttgcggattttgaactctag 29694043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 42943075 - 42943195
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||||||||||| ||| |||||||| ||||||||||| | |||||||||| |||| |  | ||  ||| ||| |  |||||| ||| || |    
T  42943075 ttttttgaattggagaagaacattgacatcaattcatggaagaaatttgggagattttgaactcaatgtgacaaattataacattagggttccaaattta 42943174  T
Q  164 tagatttgggaaagaaagagc 184  Q
    || ||||||||||||||||||    
T  42943175 tatatttgggaaagaaagagc 42943195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 3152404 - 3152338
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| |||| ||||||| |||||||    
T  3152404 ttttttgaattggggaagaactttggcatcaattcatggaagaaattttggggattttgaactctag 3152338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 8608678 - 8608613
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||||||||||| ||||||    
T  8608678 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggagattttgaactcta 8608613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 10269213 - 10269342
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||||| ||||| ||||||| ||||||||||  ||  ||||| |||||||||| |||| ||||||||  | ||||||    |||||||||  ||| || |    
T  10269213 tttgaagttttttgaattggggaagaacgttaccactaattattggaagaaattttggggattttggtgtgtagattgtagattgtaaaattaggcttcc 10269312  T
Q  157 aatttaatagatttgggaaagaaagagctg 186  Q
    ||||| ||| |||||||||||||| |||||    
T  10269313 aattttatatatttgggaaagaaatagctg 10269342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 22273555 - 22273668
Alignment:
Q  70 gaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatt 169  Q
    ||||||| ||||||| ||| |||||||| ||||||||||| | |||||||||| ||||||| | ||  ||| ||| |  |||||| ||| || ||| |||    
T  22273555 gaattggggaagaacattgacatcaattcatggaagaaatttgggagattttgaactctaggtgacaaattataacattagggttccaaatttatatatt 22273654  T
Q  170 tgggaaagaaagag 183  Q
    |||| |||||||||    
T  22273655 tggggaagaaagag 22273668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 41824380 - 41824315
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  41824380 ttttttgaattggggaagaactttgacatcaattcatggaagaaattttggggattttgaactcta 41824315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 9186316 - 9186432
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| |||||||  ||||||||| |||  ||||| |||||||||| |  | ||||||||| | ||||||||  |||||||||  ||||||||||||| |    
T  9186316 ttttttgaattgggtaagaacgttatcactaattattggaagaaatttatgggattttggagtgtagattacagattgtaaaattagggtttcaatttta 9186415  T
Q  164 tagatttgggaaagaaa 180  Q
     | ||||||| ||||||    
T  9186416 aatatttggggaagaaa 9186432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 25402522 - 25402610
Alignment:
Q  95 attaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaagag 183  Q
    |||| |||||||||| ||||  |||||||| | ||||||||  || ||| || |||||||||||||| ||| ||||||| |||||||||    
T  25402522 attattggaagaaattttggttattttggagtgtagattacagatagtacaatcagggtttcaattttatatatttggggaagaaagag 25402610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 25707031 - 25707119
Alignment:
Q  95 attaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaagag 183  Q
    |||| |||||||||| ||||  |||||||| | ||||||||  || ||| || |||||||||||||| ||| ||||||| |||||||||    
T  25707031 attattggaagaaattttggttattttggagtgtagattacagatagtacaatcagggtttcaattttatatatttggggaagaaagag 25707119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 28432634 - 28432518
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |    
T  28432634 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttcc 28432535  T
Q  157 aatttaatagatttggg 173  Q
    ||||| ||| |||||||    
T  28432534 aattttatatatttggg 28432518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 40019571 - 40019448
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||  | ||||||||  |||||||||  |||||| |    
T  40019571 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggggtgtagattacacattgtaaaattagggttcc 40019472  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  40019471 aattttatatatttggggaagaaa 40019448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 13484950 - 13484884
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| |||||||    
T  13484950 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactctag 13484884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 41041146 - 41041032
Alignment:
Q  70 gaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatt 169  Q
    ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| ||||||| | ||  ||| ||| |  |||||| ||| || ||| |||    
T  41041146 gaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactctaggtgacaaattataacattagggttccaaatttatatatt 41041047  T
Q  170 tgggaaagaaagagc 184  Q
    |||| ||||||||||    
T  41041046 tggggaagaaagagc 41041032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 11719673 - 11719608
Alignment:
Q  262 aattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgag 327  Q
    |||||||||||||||| | |||||| || ||  ||||||| ||| |||||||| ||||||||||||    
T  11719673 aattttgtcactttcggccaaattactcctttcttgtgtgacatctgacatgacaagtcttgtgag 11719608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 26239148 - 26239083
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||| ||| | |||||| ||||||||||| |||| ||||||| ||||||    
T  26239148 ttttttgaattggggaagaactttggcgtcaattcatggaagaaattttggggattttgaactcta 26239083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 33707646 - 33707581
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  33707646 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 33707581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 27692454 - 27692518
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactct 128  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| |||||    
T  27692454 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactct 27692518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 40338256 - 40338208
Alignment:
Q  61 aaatttttagaattggagaagaacgttgtcatcaattaatggaagaaat 109  Q
    |||||||| ||||||| ||||||| ||| |||||||| |||||||||||    
T  40338256 aaattttttgaattggggaagaacattgacatcaattcatggaagaaat 40338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 28100981 - 28100865
Alignment:
Q  66 tttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaata 165  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||   |||||| ||  || |||||||||| |||    
T  28100981 tttagaattggggaagaacgttgtcatcaattaatggaagaaattttgggaattttggactctagattataaattgtacaattagagtttcaattttata 28100882  T
Q  166 gatttgggaaagaaaga 182  Q
    |||||||| ||||||||    
T  28100881 gatttggggaagaaaga 28100865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 2691804 - 2691684
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| ||||||  |||||||||||||||||||||||| |||||||||||| ||||||| | ||  ||| ||| |  |||||| ||| || |    
T  2691804 ttttttgaattggggaagaattttgtcatcaattaatggaagaaattttggagattttgaactctaggtgacaaattataacattagggttccaaattta 2691705  T
Q  164 tagatttgggaaagaaagagc 184  Q
    || ||||||| ||||||||||    
T  2691704 tatatttggggaagaaagagc 2691684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 20820422 - 20820290
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccag 150  Q
    |||| |||| || ||||| ||||||||||||||| ||||||||||||| |||||||||| |||| ||||||  ||| ||| | ||  ||| |||||  ||    
T  20820422 ttaggtttttaagttttttgaattggagaagaactttgtcatcaattagtggaagaaattttggggattttaaactttaggtgacaaattataaaattag 20820323  T
Q  151 ggtttcaatttaatagatttgggaaagaaagag 183  Q
    |||| ||| || ||| ||||| |||||||||||    
T  20820322 ggttccaaatttatatatttgagaaagaaagag 20820290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 26397784 - 26397863
Alignment:
Q  257 ttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaaca 336  Q
    |||| |||||||||||||||| | |||||| || ||| ||||||| ||| |||||||| ||| |||||||||||||||||    
T  26397784 ttggaaattttgtcactttcggccaaattaatccttgcttgtgtgacatctgacatgacaagccttgtgagaggttaaca 26397863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 11254498 - 11254376
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| ||||||| ||| |||||||||||||||||| | | || ||||||| ||||||| | ||  ||| ||| |  |||||||||| || |    
T  11254498 ttttttgaattggggaagaacattgacatcaattaatggaagaattttgggggattttgaactctaggtgacaaattataacattagggtttcaaattta 11254399  T
Q  164 tagatttgggaaagaaagagctg 186  Q
    || ||||||| ||||||||||||    
T  11254398 tatatttggggaagaaagagctg 11254376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 26397596 - 26397716
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| ||||||| ||||||||||||||  |||||||| |||| ||||||| ||||||||| ||  ||| | |||  ||||||  ||||| |    
T  26397596 tttttggaattggggaagaacattgtcatcaattaacagaagaaattttggggattttgaactctagatgacaaattat-aaattagggttctaatttta 26397694  T
Q  164 tagatttgggaaagaaagagct 185  Q
    |||||||| | |||||||||||    
T  26397695 tagatttgaggaagaaagagct 26397716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 28100790 - 28100711
Alignment:
Q  262 aattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaacacacca 341  Q
    |||||||||||||||| | |||||||||| || ||||||| ||| |||||||| ||   |||||||||||||||| ||||    
T  28100790 aattttgtcactttcggccaaattagtctctgcttgtgtgtcatctgacatgacaaactttgtgagaggttaacatacca 28100711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 39190495 - 39190618
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |    
T  39190495 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttcc 39190594  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  39190595 aattttatatatttggggaagaaa 39190618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 39922683 - 39922806
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |    
T  39922683 tttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttcc 39922782  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  39922783 aattttatatatttggggaagaaa 39922806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 42879699 - 42879576
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |    
T  42879699 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttcc 42879600  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  42879599 aattttatatatttggggaagaaa 42879576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 11641744 - 11641857
Alignment:
Q  70 gaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatt 169  Q
    ||||||| ||||||| |||||||||||  ||||||||||| |||| ||||||| ||||||| | ||  ||| ||| |  |||||||| || | ||| |||    
T  11641744 gaattggggaagaactttgtcatcaatccatggaagaaattttggggattttgaactctagttgacaaattataacattagggtttcgatatcatatatt 11641843  T
Q  170 tgggaaagaaagag 183  Q
    |||| |||||||||    
T  11641844 tggggaagaaagag 11641857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 5485728 - 5485851
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  || ||||||  |||||| |    
T  5485728 tttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacatggtaaaattagggttcc 5485827  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  5485828 aattttatatatttggggaagaaa 5485851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 39084828 - 39084951
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  || ||| |    
T  39084828 tttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagagttcc 39084927  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  39084928 aattttatatatttggggaagaaa 39084951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 32653344 - 32653430
Alignment:
Q  94 aattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaa 180  Q
    ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  || |||||||||| ||| |||| || ||||||    
T  32653344 aattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagagtttcaattttatatattttgggaagaaa 32653430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 43778767 - 43778689
Alignment:
Q  94 aattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgg 172  Q
    ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |||||| ||| ||||||    
T  43778767 aattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaattttatatatttgg 43778689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 54387551 - 54387617
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| |||  ||||||| |||||||    
T  54387551 ttttttgaattggggaagaactttggcatcaattcatggaagaaattttgaggattttgaactctag 54387617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 10544694 - 10544778
Alignment:
Q  94 aattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaaga 178  Q
    |||||||||||||||| |||| ||||||||||| ||||  |   |||| ||||  |||||| |||||| ||||||||||| ||||    
T  10544694 aattaatggaagaaattttggggattttggactgtagacgagggattgaaaaattagggttccaattttatagatttggggaaga 10544778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 43520726 - 43520790
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactct 128  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| |||||    
T  43520726 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactct 43520790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 4572 - 4446
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||||| ||||||| ||||  |||||||||||||||||||||||||||| ||| |||||||||||  ||||||||| ||  |||||||||  || ||| |    
T  4572 tttgaagtttttagcattgaggaagaacgttgtcatcaattaatggaag-aattttggagattttaaactctagatgacaaattgtaaaattagagttcc 4474  T
Q  157 aatttaatagatttgggaaagaaagagc 184  Q
    ||||| ||||||||| ||||||||||||    
T  4473 aattttatagatttgagaaagaaagagc 4446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 4379 - 4300
Alignment:
Q  257 ttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaaca 336  Q
    |||| |||||||||||||||||  |||||||| | || ||||||| ||| |||| ||| || |||| |||||||||||||    
T  4379 ttggaaattttgtcactttcgatcaaattagtatatgcttgtgtgacatctgacttgacaaatcttttgagaggttaaca 4300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 18058253 - 18058121
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccag 150  Q
    |||| ||||||| ||||||||||||| |||||| |||||||||||||||| |||||| | |||  ||||||| ||||||||| ||  |||||||||  |     
T  18058253 ttaggttttgaagtttttagaattggggaagaatgttgtcatcaattaattgaagaagttttgaggattttgaactctagatgacaaattgtaaaattaa 18058154  T
Q  151 ggtttcaatttaatagatttgggaaagaaagag 183  Q
    |||| |||||| ||| ||||||| |||||||||    
T  18058153 ggttccaattttataaatttggggaagaaagag 18058121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 42558192 - 42558110
Alignment:
Q  253 gtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaac 335  Q
    |||||||| |||||||||||||||| | |||||||| | || |||||||||||||||||||| ||| ||||||||||||||||    
T  42558192 gtccttggcaattttgtcactttcggccaaattagtttatgcttgtgtggcatttgacatgacaagccttgtgagaggttaac 42558110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 2870726 - 2870845
Alignment:
Q  65 ttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaat 164  Q
    |||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| ||||||| | ||  ||| ||| |  |||||| ||| || ||    
T  2870726 tttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactctaggtgacaaattataacattagggttccaaattgat 2870825  T
Q  165 agatttgggaaagaaagagc 184  Q
    | ||||||||||||||||||    
T  2870826 atatttgggaaagaaagagc 2870845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 3369665 - 3369582
Alignment:
Q  253 gtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaaca 336  Q
    |||||||| |||||||||| ||||  | |||||||||| || ||||||| ||| |||||||| ||| |||||||||||| ||||    
T  3369665 gtccttggaaattttgtcattttcagccaaattagtctctgcttgtgtgacatctgacatgacaagccttgtgagaggtaaaca 3369582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 5784543 - 5784666
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |    
T  5784543 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttcc 5784642  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  5784643 aattttatatatttggggaagaaa 5784666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 31237259 - 31237193
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| ||| |||||||||||||||||||| | || ||||||| |||||||    
T  31237259 ttttttgaattggggaagaacattgacatcaattaatggaagaaatttgggggattttgaactctag 31237193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 35009542 - 35009608
Alignment:
Q  262 aattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgaga 328  Q
    |||||||||||||||||| |||||||||| || ||||||||||| | |||||  ||| |||||||||    
T  35009542 aattttgtcactttcgaccaaattagtctctgcttgtgtggcatctaacatggaaagccttgtgaga 35009608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 42558364 - 42558303
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagat 118  Q
    |||||| |||||||||||||  |||||||| ||||| |||||||||||||| | ||||||||    
T  42558364 tttgaagtttttagaattgggaaagaacgtcgtcattaattaatggaagaatttttggagat 42558303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 51895001 - 51894941
Alignment:
Q  70 gaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||||| ||||||| ||| |||||||| ||||||||||| | |||||||||| |||||||    
T  51895001 gaattggggaagaacattgacatcaattcatggaagaaatttgggagattttgaactctag 51894941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 3369840 - 3369789
Alignment:
Q  70 gaattggagaagaacgttgtcatcaattaatggaagaaatcttggagatttt 121  Q
    ||||||| ||| ||||||||||||||||||| |||||||| ||||| |||||    
T  3369840 gaattggggaaaaacgttgtcatcaattaatagaagaaattttggaaatttt 3369789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 11152923 - 11152837
Alignment:
Q  94 aattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaa 180  Q
    ||||| |||||||||  |||||||||||||| | |||||||   |||||||||  |||||| |||||| ||| ||||||| ||||||    
T  11152923 aattattggaagaaaatttggagattttggagtgtagattaaacattgtaaaattagggttccaattttatacatttggggaagaaa 11152837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 37087786 - 37087851
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| |||| ||||||| |||||||    
T  37087786 ttttttgaattggggaagaacattgacatcaattcatggaagaaat-ttggggattttgaactctag 37087851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 8169183 - 8169248
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||  |||||||| ||||||||||| |||||||||||| ||||||    
T  8169183 ttttttgaattggggaagaaattttacatcaattcatggaagaaattttggagattttgaactcta 8169248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 33599658 - 33599593
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  33599658 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 33599593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 34777009 - 34776944
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  34777009 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 34776944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 45045351 - 45045286
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| ||||||    
T  45045351 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactcta 45045286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 27077124 - 27077201
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactct 128  Q
    |||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||||    
T  27077124 ttaggttttgaagttttttgaattggggaagaacgttgtcatcaattaatggaagaaattttagagattttgaactct 27077201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 1344485 - 1344612
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||||| ||||| ||||||| ||||||||||  || |||||| |||||||||| |||||||||||||| | |||||||   |||||||||  |||||| |    
T  1344485 tttgaagttttttgaattggggaagaacgttaccaccaattattggaagaaattttggagattttggagtgtagattaaagattgtaaaattagggttcc 1344584  T
Q  157 aatttaatagatttgggaaagaaagagc 184  Q
    ||||| ||| |||| || ||||||||||    
T  1344585 aattttatatatttagggaagaaagagc 1344612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 24497759 - 24497874
Alignment:
Q  65 ttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaat 164  Q
    |||| ||||||| |||||||||| ||||  |||| |||||||||| ||||  |||||||| | |||||||||||||||||||  || |||||||||| ||    
T  24497759 tttttgaattggggaagaacgttatcattgattattggaagaaattttgggaattttggagtgtagattacttattgtaaaattagagtttcaattttat 24497858  T
Q  165 agatttgggaaagaaa 180  Q
    | |||| || ||||||    
T  24497859 atatttagggaagaaa 24497874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 6116610 - 6116700
Alignment:
Q  94 aattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaagagc 184  Q
    |||||||||||||||| |||| |||||| |||| |||||||   |||| ||||  ||||||||||||| ||||||||||| ||||||||||    
T  6116610 aattaatggaagaaattttggggatttttgactgtagattagagattgaaaaattagggtttcaattttatagatttggggaagaaagagc 6116700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 41494274 - 41494208
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| |||||||||||| ||||||||||| |||| ||||||| |||||||    
T  41494274 ttttttgaattggggaagaactttgtcatcaattcatggaagaaattttggggattttgaactctag 41494208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 27077321 - 27077404
Alignment:
Q  253 gtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaaca 336  Q
    |||||||| |||||||||| |||   | |||||||||  |||||||||||||| |||||||  ||| |||||||||||||||||    
T  27077321 gtccttggaaattttgtcattttaagccaaattagtccatgtttgtgtggcatctgacatggcaagccttgtgagaggttaaca 27077404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 17575540 - 17575608
Alignment:
Q  61 aaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    |||||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  17575540 aaattttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 17575608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 28821748 - 28821860
Alignment:
Q  72 attggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttg 171  Q
    ||||| ||||||  ||| |||||||||||||||||||| | || ||||||| ||||||| | ||  ||| ||| |  |||||||||| || ||| |||||    
T  28821748 attggggaagaagattgacatcaattaatggaagaaatttgggggattttgaactctaggtgacaaattataacattagggtttcaaatttatatatttg 28821847  T
Q  172 ggaaagaaagagc 184  Q
    || ||||||||||    
T  28821848 gggaagaaagagc 28821860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 42619704 - 42619581
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | |||||||   |||||||||  |||||| |    
T  42619704 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattaaacattgtaaaattagggttcc 42619605  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  42619604 aattttatacatttggggaagaaa 42619581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 24540236 - 24540171
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  24540236 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 24540171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 35861938 - 35861823
Alignment:
Q  78 gaagaacgttgtcatcaattaatggaagaaatctt-ggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaa 176  Q
    |||||| ||||||||||||||| |||||| || || || ||||||||||| ||||||||  ||| || ||  ||||||||||||| ||||||||||| ||    
T  35861938 gaagaatgttgtcatcaattaaaggaagatatttttggggattttggactatagattacaaattttataattagggtttcaattttatagatttggggaa 35861839  T
Q  177 gaaagagctgatgtat 192  Q
    |||||||||| |||||    
T  35861838 gaaagagctgttgtat 35861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 32842846 - 32842721
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||||| ||||||||| |   ||||||||||||||| |||||||||||||||| ||||  |||||||| | |||||||   |||| ||||  |||||| |    
T  32842846 tttgaagtttttagaagtaaggaagaacgttgtcattaattaatggaagaaattttgggaattttggattgtagattagagattgaaaaattagggttcc 32842747  T
Q  157 aatttaatagatttgggaaagaaaga 182  Q
    ||||| ||||||||| | ||||||||    
T  32842746 aattttatagatttgaggaagaaaga 32842721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 24846220 - 24846289
Alignment:
Q  61 aaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    |||||||| ||||||| ||||||| |||||||||||| || ||||||||||||  ||||||| |||||||    
T  24846220 aaattttttgaattggggaagaactttgtcatcaattcatagaagaaatcttgaggattttgaactctag 24846289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 23876094 - 23876036
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaat 109  Q
    |||| ||||||| ||||| ||||||| ||||||  ||||||||||||||||||||||||    
T  23876094 ttaggttttgaagttttttgaattggggaagaagattgtcatcaattaatggaagaaat 23876036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 30598777 - 30598711
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | |||||||||| |||||||    
T  30598777 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggagattttgaactctag 30598711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 46113738 - 46113804
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| |||| ||||||| |||||||    
T  46113738 ttttttgaattggggaagaactttggcatcaattcatggaagaaattttggggattttgaactctag 46113804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 51686027 - 51686093
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| |||| ||||||| |||||||    
T  51686027 ttttttgaattggggaagaactttggcatcaattcatggaagaaattttggggattttgaactctag 51686093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 13466804 - 13466851
Alignment:
Q  83 acgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||||||||||||||||||||||||| || | ||||||| |||||||    
T  13466804 acgttgtcatcaattaatggaagaaattttagggattttgaactctag 13466851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 37865754 - 37865676
Alignment:
Q  102 gaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaa 180  Q
    |||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |||||| ||| ||||||| ||||||    
T  37865754 gaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaattttatatatttggggaagaaa 37865676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 42282149 - 42282207
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttg 122  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| |||| |||||||    
T  42282149 ttttttgaattggggaagaactttggcatcaattcatggaagaaattttggggattttg 42282207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 2661523 - 2661588
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  2661523 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 2661588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 7883768 - 7883703
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  7883768 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 7883703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 35904264 - 35904199
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  35904264 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 35904199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 53188216 - 53188151
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  53188216 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 53188151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 43766698 - 43766762
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactct 128  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| |||||    
T  43766698 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactct 43766762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 17936214 - 17936339
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||||| ||||||||| | |  || ||||||||||| |||||||||||||||| ||||  |||||||| | |||||||   |||| ||||  ||||||||    
T  17936214 tttgaagtttttagaagtaggcaataacgttgtcattaattaatggaagaaattttgggaattttggattgtagattagagattgaaaaattagggtttc 17936313  T
Q  157 aatttaatagatttgggaaagaaaga 182  Q
    ||||| ||||||||| | ||||||||    
T  17936314 aattttatagatttgaggaagaaaga 17936339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 11356799 - 11356922
Alignment:
Q  61 aaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatt 160  Q
    |||||||| ||||||| ||||||| ||| |||||||| ||||||||||| | |||||||||| ||||||| | ||  ||| ||| |  |||||| ||| |    
T  11356799 aaattttttgaattggggaagaacattgacatcaattcatggaagaaatttgggagattttgaactctaggtaacaaattataacattagggttccaaat 11356898  T
Q  161 taatagatttgggaaagaaagagc 184  Q
    | ||| ||||||| ||||||||||    
T  11356899 ttatatatttggggaagaaagagc 11356922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 14338104 - 14337973
Alignment:
Q  51 ttagtttttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccag 150  Q
    |||| |||| || ||||||||| ||| || |||| |||||||||||||||||||||||| |||| ||||||| ||||||  | ||  ||| |||||  ||    
T  14338104 ttaggtttttaagtttttagaaatggggatgaactttgtcatcaattaatggaagaaattttggggattttgaactctatgtgacaaattataaaattag 14338005  T
Q  151 ggtttcaatttaatagatttgggaaagaaaga 182  Q
    |||| ||| || ||| |||| |||||||||||    
T  14338004 ggttccaaatttatatatttcggaaagaaaga 14337973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 17950976 - 17950853
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |    
T  17950976 tttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttcc 17950877  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  17950876 aattttatatatttggggaagaaa 17950853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 35174797 - 35174674
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  |||||| |    
T  35174797 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttcc 35174698  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  35174697 aattttatatatttggggaagaaa 35174674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 4289833 - 4289710
Alignment:
Q  57 tttgaaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttc 156  Q
    |||| ||||||| || |||| |||||||||   | | ||||| |||||||||  |||||||||||||| | ||||||||  |||||||||  ||| || |    
T  4289833 tttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtatagattacacattgtaaaattaggattcc 4289734  T
Q  157 aatttaatagatttgggaaagaaa 180  Q
    ||||| ||| ||||||| ||||||    
T  4289733 aattttatatatttggggaagaaa 4289710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 7371572 - 7371453
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||| ||||||| | ||  ||| ||| |  |||||| ||| || |    
T  7371572 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggattttgaactctaggtgacaaattataacattagggttccaaattta 7371473  T
Q  164 tagatttgggaaagaaagag 183  Q
    || ||||||| |||||||||    
T  7371472 tatatttggggaagaaagag 7371453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 20524984 - 20525102
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||| | || ||||||  ||||||| | ||  ||| ||| | ||||||||||| || |    
T  20524984 ttttttgaattggggaagaacattgacatcaattcatggaagaaatttgggggatttttaactctaggtgacaaattataacatcagggtttcaaatt-a 20525082  T
Q  164 tagatttgggaaagaaagag 183  Q
    || ||||||| |||||||||    
T  20525083 tatatttggggaagaaagag 20525102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 33277220 - 33277100
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| ||||||| ||   ||||||| ||||||||||| |||| ||||||| ||||||| | ||  ||| ||||| ||||||| ||| || |    
T  33277220 ttttttgaattggggaagaactttaatatcaattcatggaagaaattttggggattttgaactctaggtgacaaattataaaatcagggttccaaattta 33277121  T
Q  164 tagatttgggaaagaaagagct 185  Q
    || ||||| | |||||||||||    
T  33277120 tatatttgag-aagaaagagct 33277100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 1160 - 1283
Alignment:
Q  61 aaatttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatt 160  Q
    |||||||| ||||||| ||||||| ||| |||||||| ||||||||||| | |||||||||| ||||||| | ||  ||| ||| |  |||||| ||| |    
T  1160 aaattttttgaattggggaagaacattgacatcaattcatggaagaaatttgggagattttgaactctaggtaacaaattataacattagggttccaaat 1259  T
Q  161 taatagatttgggaaagaaagagc 184  Q
    | ||| ||||||| ||||||||||    
T  1260 ttatatatttggggaagaaagagc 1283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0920 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 1174 - 1114
Alignment:
Q  70 gaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctag 130  Q
    ||||||| ||||||| |||||||||||| ||||||||||| |||  ||||||| |||||||    
T  1174 gaattggggaagaactttgtcatcaattcatggaagaaattttgtggattttgaactctag 1114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 9547 - 9666
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaa 163  Q
    ||||| ||||||| ||| ||| ||| |||||||| ||||||||||| | || ||||||| ||||||| | ||  ||| ||| |  |||||||||| || |    
T  9547 ttttttgaattggggaaaaacattgacatcaattcatggaagaaatttgggggattttgaactctaggtgacaaattataacattagggtttcaaattta 9646  T
Q  164 tagatttgggaaagaaagag 183  Q
    || ||||||| |||||||||    
T  9647 tatatttggggaagaaagag 9666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 57751 - 57669
Alignment:
Q  102 gaagaaatcttggagattttggactctagattacttattgtaaaaccagggtttcaatttaatagatttgggaaagaaagagc 184  Q
    |||||||| ||||  |||||||| | ||||||||  || ||| || |||||||||||||| ||| ||||||| ||||||||||    
T  57751 gaagaaattttggttattttggagtgtagattacagatagtataatcagggtttcaattttatatatttggggaagaaagagc 57669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 6852 - 6917
Alignment:
Q  64 tttttagaattggagaagaacgttgtcatcaattaatggaagaaatcttggagattttggactcta 129  Q
    ||||| ||||||| ||||||  ||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  6852 ttttttgaattggggaagaaatttgacatcaattcatggaagaaattttggggattttgaactcta 6917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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