View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_low_13 (Length: 339)
Name: NF6781_low_13
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 5783530 - 5783455
Alignment:
| Q |
263 |
aatttatggcataattgaaattgaaacagtcatggatatgcttctttcactatcacacctttcactgaactccaaa |
338 |
Q |
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| T |
5783530 |
aatttatggcataattgaaattgaaacagtcctggatatgcttctttcactatcacacctttcactgacctccaaa |
5783455 |
T |
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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 5783595 - 5783533
Alignment:
| Q |
19 |
gtatttcctccagaaactagttttattgttcgcatcatactcaaggaactcaccaatataatt |
81 |
Q |
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| T |
5783595 |
gtatttcctccagaaactagttttattgttcgcatcatactcaaggaactcaccaatataatt |
5783533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 25305836 - 25305889
Alignment:
| Q |
25 |
cctccagaaactagttttattgttcgcatcatactcaaggaactcaccaatata |
78 |
Q |
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| T |
25305836 |
cctccagaaactggtttaattgttcacatcatactcaagaaactcaccaatata |
25305889 |
T |
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