View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6781_low_14 (Length: 334)

Name: NF6781_low_14
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6781_low_14
NF6781_low_14
[»] chr6 (12 HSPs)
chr6 (1-282)||(6724247-6724537)
chr6 (7-172)||(212003-212168)
chr6 (7-96)||(17533390-17533478)
chr6 (85-193)||(26545988-26546095)
chr6 (2-69)||(16109933-16110000)
chr6 (165-266)||(17533274-17533381)
chr6 (1-62)||(7495004-7495065)
chr6 (203-266)||(1929155-1929217)
chr6 (83-193)||(12311897-12312007)
chr6 (13-177)||(12283608-12283771)
chr6 (162-202)||(211943-211983)
chr6 (3-55)||(688087-688139)
[»] chr1 (14 HSPs)
chr1 (3-266)||(31183510-31183775)
chr1 (9-263)||(29488310-29488569)
chr1 (3-232)||(2136850-2137083)
chr1 (26-157)||(51273129-51273262)
chr1 (1-108)||(4073506-4073613)
chr1 (1-88)||(50709589-50709675)
chr1 (1-88)||(46594202-46594288)
chr1 (1-96)||(22791058-22791151)
chr1 (4-157)||(50461121-50461266)
chr1 (161-266)||(22790945-22791053)
chr1 (8-75)||(30193412-30193478)
chr1 (161-203)||(50709686-50709728)
chr1 (165-232)||(16123013-16123084)
chr1 (1-55)||(38682929-38682983)
[»] chr2 (13 HSPs)
chr2 (5-263)||(36925598-36925856)
chr2 (1-266)||(26352651-26352920)
chr2 (1-266)||(3353174-3353439)
chr2 (1-192)||(45388806-45388997)
chr2 (1-153)||(18858528-18858680)
chr2 (16-202)||(44986466-44986650)
chr2 (20-180)||(36525847-36526009)
chr2 (1-96)||(43355706-43355800)
chr2 (203-266)||(14749544-14749606)
chr2 (1-100)||(16496758-16496856)
chr2 (93-199)||(11457964-11458070)
chr2 (208-266)||(45389019-45389076)
chr2 (202-266)||(43344689-43344752)
[»] chr4 (12 HSPs)
chr4 (1-193)||(44746471-44746663)
chr4 (1-203)||(43770428-43770627)
chr4 (1-270)||(21619618-21619888)
chr4 (1-193)||(22198747-22198934)
chr4 (2-78)||(34075140-34075215)
chr4 (1-177)||(34733814-34733988)
chr4 (83-201)||(35823460-35823578)
chr4 (161-266)||(10632247-10632355)
chr4 (115-185)||(4775964-4776034)
chr4 (32-141)||(25204405-25204522)
chr4 (203-266)||(47724673-47724735)
chr4 (162-224)||(38947679-38947745)
[»] chr8 (13 HSPs)
chr8 (2-266)||(37231837-37232104)
chr8 (7-203)||(2813633-2813829)
chr8 (1-232)||(9136558-9136790)
chr8 (61-273)||(14180189-14180402)
chr8 (26-157)||(11558763-11558894)
chr8 (1-78)||(14180108-14180184)
chr8 (92-203)||(31431248-31431359)
chr8 (135-266)||(39297500-39297637)
chr8 (1-139)||(18928485-18928623)
chr8 (135-230)||(22470724-22470822)
chr8 (162-199)||(32579149-32579186)
chr8 (27-108)||(39297643-39297724)
chr8 (115-232)||(12006871-12006992)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-203)||(394223-394425)
[»] chr7 (12 HSPs)
chr7 (4-262)||(44797994-44798254)
chr7 (5-262)||(31396988-31397248)
chr7 (1-94)||(48138560-48138652)
chr7 (2-75)||(24699810-24699882)
chr7 (97-202)||(47277897-47278002)
chr7 (1-109)||(46192231-46192339)
chr7 (161-266)||(48138659-48138767)
chr7 (1-65)||(16817901-16817964)
chr7 (95-193)||(22201255-22201353)
chr7 (95-193)||(22236468-22236566)
chr7 (1-57)||(25482609-25482665)
chr7 (203-263)||(9229429-9229488)
[»] chr5 (13 HSPs)
chr5 (1-266)||(7732281-7732545)
chr5 (1-125)||(12118372-12118496)
chr5 (20-202)||(12848318-12848498)
chr5 (32-172)||(41634469-41634610)
chr5 (1-88)||(42990744-42990830)
chr5 (2-108)||(27972051-27972159)
chr5 (116-190)||(39329596-39329670)
chr5 (103-193)||(8802687-8802777)
chr5 (162-262)||(41634663-41634766)
chr5 (127-203)||(36906776-36906852)
chr5 (161-193)||(39700891-39700923)
chr5 (85-187)||(5836648-5836750)
chr5 (1-55)||(13407268-13407322)
[»] chr3 (22 HSPs)
chr3 (1-203)||(31489382-31489588)
chr3 (1-182)||(24611339-24611522)
chr3 (1-203)||(50387245-50387442)
chr3 (1-266)||(21842595-21842863)
chr3 (94-266)||(47014501-47014676)
chr3 (1-266)||(21858238-21858504)
chr3 (94-266)||(21853839-21854013)
chr3 (1-81)||(47014323-47014402)
chr3 (1-88)||(43471835-43471921)
chr3 (1-108)||(1341626-1341735)
chr3 (20-156)||(8913548-8913685)
chr3 (93-203)||(53530563-53530673)
chr3 (135-265)||(24121239-24121372)
chr3 (1-108)||(24121124-24121235)
chr3 (161-203)||(43471932-43471974)
chr3 (202-266)||(16343146-16343210)
chr3 (161-232)||(1341547-1341622)
chr3 (15-96)||(2111477-2111558)
chr3 (1-131)||(20619322-20619452)
chr3 (203-266)||(36172019-36172081)
chr3 (201-266)||(35433483-35433547)
chr3 (3-55)||(29324144-29324196)
[»] scaffold0051 (1 HSPs)
scaffold0051 (201-266)||(53789-53854)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 6724537 - 6724247
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  6724537 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatatttttggtggatgaaagcaaagagagataggagattcaa 6724438  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataa---- 196  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||        
T  6724437 tcaataaataataaacaaactttgtattgagttcttttattgatgcatttgctgatactataacatacgaatgaaaatagaatataatttatataatttt 6724338  T
Q  197 -----aaacttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtattaaagggtcatcgatgc 282  Q
         |   |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  6724337 tttttatttttttttatattttgattgcatgtattatttttctgtaaatgatggcttttatgattatatagtattaaaggatcatcgatgc 6724247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 212168 - 212003
Alignment:
Q  7 aatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatcaatc 106  Q
    |||||||||||||||| | ||||||||||||| ||||||| |||||||||| ||||||| | ||||||||   ||  ||||| |  | ||||||||||||    
T  212168 aatttaagatatgaattaatataattgtttttagattaactaattaaaaattatgttttcgatggatgaagataactagagacaacatattcaatcaatc 212069  T
Q  107 aatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaat 172  Q
    || | |||||||||||||| || ||||||||||||||||  |||||||||| | ||||| ||||||    
T  212068 aacattaaacaaactttgtttttagttcttttattgatgtgtttgttgatattctaacagatgaat 212003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 17533478 - 17533390
Alignment:
Q  7 aatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagat 96  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||| |||||||    
T  17533478 aatttaagatatgaatcactgtaattgtttttcgat-aaccaattaaaaattatgtttttggtggatgaaagtaatgagagagaggagat 17533390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 26546095 - 26545988
Alignment:
Q  85 gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaata 184  Q
    |||| ||||||||||||||||||||  |||||||| ||||| ||||||||||||| |||||  | ||||||||   |||||||||| |||||| | ||||    
T  26546095 gagaaaggagattcaatcaatcaattttaaacaaaatttgtcttgagttctttta-tgatgtttctgttgatatcctaacatatgattgaaaacataata 26545997  T
Q  185 tgatttata 193  Q
    |||||||||    
T  26545996 tgatttata 26545988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 16109933 - 16110000
Alignment:
Q  2 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggt 69  Q
    |||||||| |||||||||||| ||| ||||| ||||| |||||||||||||||||| |||||||||||    
T  16109933 gattcaatataagatatgaattagtttaattattttttgattaaccaattaaaaattatgtttttggt 16110000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 17533381 - 17533274
Alignment:
Q  165 atatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttct--gtaaatgatgacttttataattat 258  Q
    |||||||||||||||||||||||||||||  |||||||    |||| |||||||||| |||||||||||||| |   |||||  |||||||||| | |||    
T  17533381 atatgaatgaaaatagaatatgatttatacgaaaactttatattttttattttgatcacatgtattattttttttattaaattgtgacttttatgaatat 17533282  T
Q  259 atagtatt 266  Q
    ||||||||    
T  17533281 atagtatt 17533274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7495065 - 7495004
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgt 62  Q
    |||||||||||||||||||||||| |||||||||||||   |||||| ||||||||| ||||    
T  7495065 tgattcaatttaagatatgaatcactataattgttttttatttaacctattaaaaattatgt 7495004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 1929155 - 1929217
Alignment:
Q  203 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    ||||||||||||||  |||||||||||||| |||||||   |||||||||||||||||||||||    
T  1929155 ttttatattttgattacatgtattattttt-tgtaaattgcgacttttataattatatagtatt 1929217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 12312007 - 12311897
Alignment:
Q  83 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 182  Q
    |||||| |||| ||||||| |||||| | ||||||||  |||| ||||||||||||  |||||| | | ||||||    |||||||||||| ||||| ||    
T  12312007 gagagagaggatattcaattaatcaacattaaacaaaacttgtgttgagttcttttgatgatgcttctattgatatcccaacatatgaatggaaataaaa 12311908  T
Q  183 tatgatttata 193  Q
    |||||||||||    
T  12311907 tatgatttata 12311897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 12283771 - 12283608
Alignment:
Q  13 agatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagt 112  Q
    ||||||| ||||||| |||||||| | ||| ||||| || ||| | ||  |||| |||||||||   || |||||| |||||||||||| |||||| | |    
T  12283771 agatatgcatcagtagaattgtttctggatgaaccactttaaatt-atactttttgtggatgaagttaacgagagagaggagattcaattaatcaacatt 12283673  T
Q  113 aaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaa 177  Q
    || |||| ||||| |||| |||||||| |||||| | | ||||||    ||||||||||||||||    
T  12283672 aatcaaaatttgtgttgaattcttttaatgatgcttctattgatatcccaacatatgaatgaaaa 12283608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 211983 - 211943
Alignment:
Q  162 aacatatgaatgaaaatagaatatgatttatataaaaactt 202  Q
    |||||||||||||||||| |||||||||||||  |||||||    
T  211983 aacatatgaatgaaaataaaatatgatttatacgaaaactt 211943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 688139 - 688087
Alignment:
Q  3 attcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 55  Q
    ||||||||| ||||||| |||| ||||||||||| ||||| ||||| ||||||    
T  688139 attcaattttagatatgcatcaatataattgtttctcgatgaaccacttaaaa 688087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 31183510 - 31183775
Alignment:
Q  3 attcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatc 102  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||  ||||| |||| ||||||||    
T  31183510 attcaatttgagatatgaatcactataattgcttttcgattaaccaattaaaaattatgtttttggtg-atgaaagtaacaagagagaggaaattcaatc 31183608  T
Q  103 aatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt 202  Q
    |||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||   ||||||||||| |||||||||||||||||||||| |||||||    
T  31183609 aatcaatattaaacaaactttgttttgagttcttctattgatacatttgttgatatcctaacatatgaaagaaaatagaatatgatttatatgaaaactt 31183708  T
Q  203 ----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
        |||| |||||||||  |||||||||||||| |||||||| |||||||||| |||||||||||||    
T  31183709 tacattttttattttgattacatgtattattttt-tgtaaatggtgacttttatgattatatagtatt 31183775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 29488310 - 29488569
Alignment:
Q  9 tttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaa 108  Q
    ||||||||||| |||| | ||||||| ||| |||||||||||||||||| |||||||| | ||||||||| || ||| ||  ||||||||||||||||||    
T  29488310 tttaagatatgtatcattgtaattgtattttgattaaccaattaaaaattatgtttttagaggatgaaagtaacgagtgagtggagattcaatcaatcaa 29488409  T
Q  109 tagtaaacaaactttgtattgagttctttt--attgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt---- 202  Q
     | |||||||||||||| ||||||||||||  |||||||||||||||||||   ||||||||||||||||||| |||||||||||||  |||||||        
T  29488410 cattaaacaaactttgttttgagttctttttaattgatgcatttgttgatatcttaacatatgaatgaaaataaaatatgatttatacgaaaactttata 29488509  T
Q  203 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagt 263  Q
    |||| |||||||||| |||| ||||||||| | |||||  |||||||||| ||| ||||||    
T  29488510 ttttttattttgatcacatgcattattttt-tctaaatcgtgacttttatcattttatagt 29488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 2136850 - 2137083
Alignment:
Q  3 attcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatc 102  Q
    ||||||||||| ||||||||||  | ||||||||| ||||||||||||||||||| ||||||||| | || ||||| || || | |   || ||||||||    
T  2136850 attcaatttaatatatgaatcaccacaattgttttacgattaaccaattaaaaattatgtttttgattgacgaaagtaacgaaataggagatattcaatc 2136949  T
Q  103 aatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt 202  Q
    |||||| | |||| ||||||||| |||| |||||||||| |||||||||||||||   |||||||||||||||||||||||||||||| ||  |||||||    
T  2136950 aatcaacattaaataaactttgttttgaattcttttattaatgcatttgttgatatcctaacatatgaatgaaaatagaatatgatttctacgaaaactt 2137049  T
Q  203 ----ttttatattttgatcgcatgtattattttt 232  Q
        |||| | |||||||| ||||||||||||||    
T  2137050 tagattttttgttttgatcacatgtattattttt 2137083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 51273129 - 51273262
Alignment:
Q  26 tataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaa--agagagataggagattcaatcaatcaatagtaaacaaacttt 123  Q
    ||||||| |||||||||| || |||||||||| ||||||||| | |||||||||||  ||||||| ||||||||||||||||||||| |||||||| |||    
T  51273129 tataattatttttcgattgactaattaaaaattatgtttttgatagatgaaagcaatgagagagagaggagattcaatcaatcaatattaaacaaatttt 51273228  T
Q  124 gtattgagttcttttattgatgcatttgttgata 157  Q
    || ||||||||||||||||||||| |||||||||    
T  51273229 gttttgagttcttttattgatgcagttgttgata 51273262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 4073613 - 4073506
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaatta-aaaatcatgtttttggtggatgaaagcaaagagagataggagattca 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |  ||||||  |||||||||    
T  4073613 tgattcaatttaagatatgaatcactataattgtttttcgattaaccaattaaaaaattatgtttttggtggatgaaagtagcgagaga-gggagattca 4073515  T
Q  100 atcaatcaa 108  Q
    |||||||||    
T  4073514 atcaatcaa 4073506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 50709589 - 50709675
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagaga 88  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||    
T  50709589 tgattcaatttaagatatgaatcattataattgtttttcga-taaccaattaaaaattatgtttttggtggatgaaagtaacgagaga 50709675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 46594288 - 46594202
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagaga 88  Q
    |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||||||| || ||||||    
T  46594288 tgattcaatttaagatatgaatcactataattgtttttcga-tgaccaattaaaaattatgtttttggtggatgaaagtaacgagaga 46594202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 22791151 - 22791058
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagat 96  Q
    |||||||||||||||||||||||| || ||||||||| |||| |||||||||||||| |||||||||||||||||||| || |||||| |||||||    
T  22791151 tgattcaatttaagatatgaatcactacaattgtttt-cgat-aaccaattaaaaattatgtttttggtggatgaaagtaacgagagagaggagat 22791058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 50461266 - 50461121
Alignment:
Q  4 ttcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatca 103  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| ||||||| |||||||| ||||||||||| || || ||  || | |||||||||    
T  50461266 ttcaatttaagatatgaatcgatataattgtttttcgattaaccaaataaaaattatgttttttgtggatgaaagtaacgaaag--agaaaattcaatca 50461169  T
Q  104 atcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgata 157  Q
    || || | |        ||||| |||||||||||||||||||||||||||||||    
T  50461168 attaacatt------tttttgttttgagttcttttattgatgcatttgttgata 50461121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 22791053 - 22790945
Alignment:
Q  161 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 256  Q
    ||||||||||||||||||| |||||||||||||  |||||||    |||| |||||||||| |||||||||||||| |||||||  |||||||||| |||    
T  22791053 taacatatgaatgaaaataaaatatgatttatacgaaaactttaagttttttattttgatcacatgtattattttt-tgtaaattgtgacttttatgatt 22790955  T
Q  257 atatagtatt 266  Q
    ||||||||||    
T  22790954 atatagtatt 22790945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 30193412 - 30193478
Alignment:
Q  8 atttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatga 75  Q
    |||||| || ||||||  ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  30193412 atttaaaatttgaatcgctataattgtttttcgat-aaccaattaaaaattatgtttttggtggatga 30193478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 50709686 - 50709728
Alignment:
Q  161 taacatatgaatgaaaatagaatatgatttatataaaaacttt 203  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  50709686 taacatatgaatgaaaatagaatatgatttatatgaaaacttt 50709728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 16123013 - 16123084
Alignment:
Q  165 atatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 232  Q
    ||||||||||||||| |||||| ||||||  |||||||    |||| ||||||||||| |||||||||||||    
T  16123013 atatgaatgaaaatataatatggtttataagaaaactttacattttttattttgatcgaatgtattattttt 16123084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38682983 - 38682929
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 55  Q
    ||||||||||| ||||||| |||| || |||||||| ||||||||||| ||||||    
T  38682983 tgattcaattttagatatgcatcaatagaattgtttctcgattaaccacttaaaa 38682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 5 - 263
Target Start/End: Original strand, 36925598 - 36925856
Alignment:
Q  5 tcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatcaa 104  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||||  ||||||| |||||||||||||||    
T  36925598 tcaatttaagatatgaatgactataattgtttttcgattaaccaattaaaaattatgtttttggtagatgaaagc-gagagagagaggagattcaatcaa 36925696  T
Q  105 tcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt- 203  Q
    |||| | |||||||||||||| ||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||| ||  ||||||||     
T  36925697 tcaacattaaacaaactttgttttgagttcttttattgatgtatttgttgata-tctaacatgtgaatgaaaatagaatatgatttttacgaaaacttta 36925795  T
Q  204 --tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagt 263  Q
      ||| |||||||||| |||||||||||||| |||||||  ||||||||||  |||||||||    
T  36925796 catttttattttgatcacatgtattattttt-tgtaaattgtgacttttatggttatatagt 36925856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 26352651 - 26352920
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| || || |||  ||||||||||    
T  26352651 tgattcaatttaagatatgagtcactataattgtttctcgattaaccaattaaaaattatgtttttggtggatgaaagtaatgaaagaggggagattcaa 26352750  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataaca-tatgaatgaaaatagaatatgatttatataaaaa 199  Q
    |||||||| | |||| |||| | || |||||||||||||  |||  |||||||||||   ||||| |||||||||||||| |||||||||||||  ||||    
T  26352751 tcaatcaacattaaataaacgtagttttgagttcttttaccgataaatttgttgatatcctaacattatgaatgaaaataaaatatgatttatacgaaaa 26352850  T
Q  200 ctt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    |||    |||| |||||||||||| |||||||||||| ||||||| ||||||||||| ||| |||||||||    
T  26352851 ctttacattttttattttgatcgcttgtattattttt-tgtaaattatgacttttatgattttatagtatt 26352920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 3353174 - 3353439
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || ||| || | ||||||| |    
T  3353174 tgattcaatttaagatatgaatcattataattgtttttcgattaaccagttaaaaattatgtttttggtagatgaaagtaacgagggagaagagattcga 3353273  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaac 200  Q
    |||||||| | |||||||||||||| ||||||||||||||| || ||||||||||||   |||||||||||||||||| | ||||||||||||  |||||    
T  3353274 tcaatcaacattaaacaaactttgttttgagttcttttattcatacatttgttgatatcctaacatatgaatgaaaattggatatgatttatacgaaaac 3353373  T
Q  201 tt---ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    ||     || |||||||||  ||||| |||||||| |||||||   ||||||||| |||||||||||||    
T  3353374 ttcacaattttattttgat--catgtgttattttt-tgtaaattgggacttttatgattatatagtatt 3353439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 45388806 - 45388997
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||| ||||||||| || ||||||| || |||||| | |||||||||    
T  45388806 tgattcaatttaagatataaatcactataattatttttcgattaactaattaaaaattatgtttttgttgaatgaaagtaacgagagagatgagattcaa 45388905  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 192  Q
    |||||||| | |||||| ||||||| || |||||||||||||||||||||||| |||   ||||||||||||||||||| ||||||||||||    
T  45388906 tcaatcaacattaaacatactttgttttaagttcttttattgatgcatttgttaatatcctaacatatgaatgaaaatataatatgatttat 45388997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 18858528 - 18858680
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||||||||| ||| ||||||||||| |||||||| || |||||| | |||||||||    
T  18858528 tgattcaatttatgatatgaatgaatataattgtttttcgattaaccaattaataattatgtttttggtagatgaaagtaacgagagagaagagattcaa 18858627  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgtt 153  Q
    |||||||  | |||||||||||||| || | ||||||||||||||||||||||    
T  18858628 tcaatcagcattaaacaaactttgttttaaattcttttattgatgcatttgtt 18858680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 44986466 - 44986650
Alignment:
Q  16 tatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaaga-gagataggagattcaatcaatcaatagtaa 114  Q
    |||||| || |||||||||||||||||||||||| | ||||| ||||||||  ||||| ||||  | || |||| ||||||||||||||||||| | |||    
T  44986466 tatgaaacaatataattgtttttcgattaaccaactgaaaattatgtttttcttggat-aaag--atgacgagaaaggagattcaatcaatcaacattaa 44986562  T
Q  115 acaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt 202  Q
    ||||||||||| ||| |||||||||||||||||||||||||||   ||| |||| | |||||||| |||||||||||||  |||||||    
T  44986563 acaaactttgttttgggttcttttattgatgcatttgttgatatcttaatatataagtgaaaatataatatgatttatactaaaactt 44986650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 36526009 - 36525847
Alignment:
Q  20 aatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaaga--gagataggagattcaatcaatcaatagtaaaca 117  Q
    ||||| ||||| |||||||||||||| |||||| |||| ||||||||| ||||||| || || ||  |||| |||  |||||||||||||||| ||||||    
T  36526009 aatcaatataactgtttttcgattaatcaattacaaattatgtttttgttggatgagagtaacgacagagacaggtaattcaatcaatcaatattaaaca 36525910  T
Q  118 aactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatag 180  Q
    || ||||| ||||||| |||||||||||||||||||||     ||| ||||||||||||||||    
T  36525909 aattttgttttgagtttttttattgatgcatttgttgacgtcctaatatatgaatgaaaatag 36525847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 43355800 - 43355706
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagat 96  Q
    |||||||| ||||||||||||||| |||||||||||||| || ||| |||||||||| |||||||||||||||||||| || |||||| |||||||    
T  43355800 tgattcaagttaagatatgaatcactataattgtttttctat-aacgaattaaaaattatgtttttggtggatgaaagtaatgagagagaggagat 43355706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 14749544 - 14749606
Alignment:
Q  203 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    |||| |||||||||| |||||||||||||| ||||||| | ||||||||| |||||||||||||    
T  14749544 ttttttattttgatcacatgtattattttt-tgtaaatcacgacttttatgattatatagtatt 14749606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 16496856 - 16496758
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    ||||||||||| |||| |||||||||| |||||||| ||||| ||||| |||||| | || ||||| ||||||||| ||||  ||||| | |||||||||    
T  16496856 tgattcaattttagatgtgaatcagtaaaattgtttctcgatgaaccacttaaaagt-atattttttgtggatgaatgcaataagagagatgagattcaa 16496758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 11457964 - 11458070
Alignment:
Q  93 agattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 192  Q
    ||||| ||| |||||| | || ||||| ||||| ||| ||| ||||| |||||| | ||||||||  |||| ||||||||||||||| ||||| ||||||    
T  11457964 agatttaattaatcaacattagacaaaatttgtgttgcgttattttaatgatgcttatgttgatatcataatatatgaatgaaaatataatattatttat 11458063  T
Q  193 ataaaaa 199  Q
    || ||||    
T  11458064 atgaaaa 11458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 45389019 - 45389076
Alignment:
Q  208 tattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    |||||||||| |||||||||||||| |||||||  |||||||||| |||||||||||||    
T  45389019 tattttgatcacatgtattattttt-tgtaaattgtgacttttatgattatatagtatt 45389076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 43344752 - 43344689
Alignment:
Q  202 tttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    ||||| |||||||||| |||||||||||||| ||| |||  |||||||||| |||||||||||||    
T  43344752 tttttttattttgatcacatgtattattttt-tgtgaattgtgacttttatgattatatagtatt 43344689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 44746471 - 44746663
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||| |||||||||||    
T  44746471 tgattcaatttaagatataaattactataattgtttttcgattaaccaattataaattatgtttttggtggatgaaagtaacgagagagaggagattcaa 44746570  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 193  Q
    |||| ||| | |||||||||||||| ||||||| |||||||||||||||||||||||   ||| ||||||||||||||| |||||||||||||    
T  44746571 tcaaccaacattaaacaaactttgttttgagtttttttattgatgcatttgttgatatcctaagatatgaatgaaaataaaatatgatttata 44746663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 43770627 - 43770428
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    |||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||  |||||||| |||||| |||||| |||||  || ||||||||    
T  43770627 tgattcaatttaagatatgaatcactacaattgtctttcgattaaccagttaaaaattgtgtttttgttggatgtaagcaacgagag--agaagattcaa 43770530  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaac 200  Q
    |||||||| | ||||||||| |||| ||||||| ||||||| ||| |||||||||||   |||| ||||||  | ||||||||||||||||||  |||||    
T  43770529 tcaatcaacattaaacaaac-ttgttttgagttattttattaatgaatttgttgatatcctaacgtatgaaatataatagaatatgatttatacgaaaac 43770431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 21619618 - 21619888
Alignment:
Q  1 tgattcaattt-aagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattca 99  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||| || ||||| ||||||||| | || |||||  || | |||||    
T  21619618 tgattcaattttaagatatgaatgagtataattgtttttcgattaatcaatgaaaaattattttttttgtggatgaaggtaatgagag--agaaaattca 21619715  T
Q  100 atcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaa 199  Q
    ||||||||| | ||||||||||||   ||||||| |||||||||||||  |||| |||   |||||||||||| |||||||||| || ||||   ||||     
T  21619716 atcaatcaacattaaacaaacttttatttgagttattttattgatgcacgtgttaatatcctaacatatgaataaaaatagaatgtgtttta-cgaaaat 21619814  T
Q  200 ctt---ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtattaaag 270  Q
     ||   ||||||||||||||| |||||||||||||| |||  ||  |||||||||| ||| ||||||| |||||    
T  21619815 tttatattttatattttgatcacatgtattatttttttgtcgattgtgacttttatgattgtatagtaataaag 21619888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 22198934 - 22198747
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||  |||| || ||||   ||||||||||     
T  22198934 tgattcaatttaagacacgaatcactataattgtttttcgattaaccaattaaaaatcatatttttggtggacaaaagtaatgaga-tcaggagattcag 22198836  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 193  Q
    |||||||| | |||||||||||||| |||||||||    || |  ||||||||||||   |||||||| ||||||||||  ||||||||||||    
T  22198835 tcaatcaacattaaacaaactttgttttgagttct----ttaacacatttgttgatatcctaacatataaatgaaaatacgatatgatttata 22198747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 34075215 - 34075140
Alignment:
Q  2 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaag 78  Q
    ||||||||||||||||||||||| ||||| || ||||||| |||| |||||||||| ||||||||||||||||||||    
T  34075215 gattcaatttaagatatgaatcactataactgcttttcga-taacaaattaaaaattatgtttttggtggatgaaag 34075140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 34733814 - 34733988
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    ||||| || |||| |||| |||||| |||||| |||||| |||||||||||||| || || ||||||||||||||| | || || ||  || | ||| ||    
T  34733814 tgatttaagttaaaatataaatcagcataattatttttcaattaaccaattaaatattatatttttggtggatgaaggtaacgaaag--agaaaattaaa 34733911  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaa 177  Q
    | ||||||   |||||||| ||||| || |||  |||||||||||||||| ||||||   |||||||||||||||||    
T  34733912 taaatcaacgttaaacaaaatttgttttaagtgtttttattgatgcatttattgatatcctaacatatgaatgaaaa 34733988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 35823578 - 35823460
Alignment:
Q  83 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 182  Q
    |||||| | |||||||||| |||||| | || ||||| ||||| ||||||||||||| |||  | | | ||||||   ||||||||||||||||||| ||    
T  35823578 gagagagaagagattcaattaatcaacattatacaaaatttgtgttgagttcttttaatgacacttctattgatatcctaacatatgaatgaaaataaaa 35823479  T
Q  183 tatgatttatataaaaact 201  Q
    ||||||||||| |||||||    
T  35823478 tatgatttataaaaaaact 35823460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 10632247 - 10632355
Alignment:
Q  161 taacatatgaatgaaaatagaatatgatttatataaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 256  Q
    ||||||||||||||||||| |||||||||||||  ||||||||    |||  ||||||||| |||||||||||||| |||||||  |||| ||||| |||    
T  10632247 taacatatgaatgaaaataaaatatgatttatacgaaaactttacatttttaattttgatcacatgtattattttt-tgtaaattgtgacatttatgatt 10632345  T
Q  257 atatagtatt 266  Q
    ||||| ||||    
T  10632346 atataatatt 10632355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 4775964 - 4776034
Alignment:
Q  115 acaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatat 185  Q
    ||||| ||||| ||||||||||| | |||||| | |||||||| ||||||||||| ||||||||| |||||    
T  4775964 acaaaatttgtgttgagttctttcaatgatgcttatgttgatattataacatatggatgaaaatataatat 4776034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 25204522 - 25204405
Alignment:
Q  32 tgtttttcgattaaccaattaaaaatcatgtttttggt-----ggatgaaagcaa--agagagat-aggagattcaatcaatcaatagtaaacaaacttt 123  Q
    ||||||||||||||||||||||||||  |||||||  |     ||||||||| ||  |||||||| | ||||||||||||||||| | |||||||| |||    
T  25204522 tgtttttcgattaaccaattaaaaattgtgtttttttttttatggatgaaagtaaccagagagatgatgagattcaatcaatcaacattaaacaaaattt 25204423  T
Q  124 gtattgagttcttttatt 141  Q
    || |||| ||||||||||    
T  25204422 gttttgaattcttttatt 25204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 47724735 - 47724673
Alignment:
Q  203 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    |||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  47724735 ttttttattttgatcacatgtattattttt-tgtaaattgcgacttttatgattatatagtatt 47724673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 38947745 - 38947679
Alignment:
Q  162 aacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgta 224  Q
    |||||||||||||||||||||||| |||||||  |||| ||    ||||||||||||||| ||||||    
T  38947745 aacatatgaatgaaaatagaatataatttatacgaaaattttatattttatattttgatcacatgta 38947679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 37231837 - 37232104
Alignment:
Q  2 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaat 101  Q
    |||||||||||||||||||||||   ||| | |||||||||||||||||||||||| ||||||||||| |||||||| || |||||| |||| ||| |||    
T  37231837 gattcaatttaagatatgaatcacagtaaatatttttcgattaaccaattaaaaattatgtttttggttgatgaaagtaacgagagaaaggaaattaaat 37231936  T
Q  102 caatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaact 201  Q
     |||||| | |||||||||||||| |||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||  |||| |    
T  37231937 taatcaacattaaacaaactttgttttgagttcttttattgatgcatttgttgatatcctaacatataaatgaaaatagaatatgatttatacgaaaaat 37232036  T
Q  202 t----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    |    |||| || ||||||| ||| |||||||||| |||||||  ||||||||||  ||||||||||||    
T  37232037 ttacattttttactttgatcacatatattattttt-tgtaaattgtgacttttatgcttatatagtatt 37232104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 2813829 - 2813633
Alignment:
Q  7 aatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatcaatc 106  Q
    ||||||||||| |||||| ||||||| ||||||||||||| ||||||| || ||  |||||||||||||||| || ||||||  ||||||| ||||||||    
T  2813829 aatttaagatacgaatcactataattatttttcgattaacaaattaaatattataattttggtggatgaaagtaacgagagaggggagatttaatcaatc 2813730  T
Q  107 aatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 203  Q
    || | |||||||||||||| ||||||||||||||||||  |||||||||||   ||||||||||||||||||||||||||||||||| |||||||||    
T  2813729 aacattaaacaaactttgttttgagttcttttattgatatatttgttgatatcctaacatatgaatgaaaatagaatatgatttatacaaaaacttt 2813633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9136790 - 9136558
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| | ||||||   ||||||||||| || |||||| | |||||||||    
T  9136790 tgattcaatttaaaataagaatcactataattgtttttcgattaaccaattaaaatt-atgttta--gtggatgaaagtaacgagagagatgagattcaa 9136694  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaac 200  Q
    | ||| || | |||| ||| ||| | |||| |||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  ||||     
T  9136693 taaattaacaataaataaattttattttgaattctcttattgatgcatttgttgatatcataacatatgaatgaaaatagaatatgatttatacgaaaat 9136594  T
Q  201 tt----ttttatattttgatcgcatgtattattttt 232  Q
    ||    |||| |||||||||| |||||||| |||||    
T  9136593 tttacattttttattttgatcacatgtatttttttt 9136558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 61 - 273
Target Start/End: Original strand, 14180189 - 14180402
Alignment:
Q  61 gtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatacta 160  Q
    |||||||||||||||||| || |||||| | || |||||||||||||| | ||||||||||||||  ||||||||||||||||||||||||||||||       
T  14180189 gtttttggtggatgaaagtaacgagagagatgaaattcaatcaatcaacattaaacaaactttgt--tgagttcttttattgatgcatttgttgatatcc 14180286  T
Q  161 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 256  Q
    |||| ||||||||||||||||||||||||||||  |||| ||    | || |||||||||| |||| ||||||||| |||||||  |||||||||| |||    
T  14180287 taacttatgaatgaaaatagaatatgatttatacgaaaaatttacatattttattttgatcacatgcattattttt-tgtaaattgtgacttttatgatt 14180385  T
Q  257 atatagtattaaagggt 273  Q
    | |||||||| ||||||    
T  14180386 aaatagtattgaagggt 14180402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 11558763 - 11558894
Alignment:
Q  26 tataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgt 125  Q
    |||||||  |||||||||||| |||||||||  || ||||||||||||||||| ||  |||| || |||||||||| |||||| | |||||||| |||||    
T  11558763 tataattaattttcgattaactaattaaaaaatatatttttggtggatgaaagtaagaagagttatgagattcaattaatcaacattaaacaaattttgt 11558862  T
Q  126 attgagttcttttattgatgcatttgttgata 157  Q
     |||| ||||||||||| ||||||||||||||    
T  11558863 tttgatttcttttattgttgcatttgttgata 11558894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 14180108 - 14180184
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaag 78  Q
    ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  14180108 tgattcaatttaagatatgtatcactataatt-tttttcgattaaccaattaaaaattatgtttttggtggatgaaag 14180184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 31431359 - 31431248
Alignment:
Q  92 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgattta 191  Q
    |||||||||  |||||| | || ||||| ||||| ||||||||||||| |||||  | ||| ||||   ||||||||||||||||||| |||||||||||    
T  31431359 gagattcaaataatcaagattagacaaaatttgtgttgagttcttttaatgatgtttctgtggatatcttaacatatgaatgaaaatataatatgattta 31431260  T
Q  192 tataaaaacttt 203  Q
    ||| ||||||||    
T  31431259 tatgaaaacttt 31431248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 266
Target Start/End: Complemental strand, 39297637 - 39297500
Alignment:
Q  135 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattt 230  Q
    |||||||||| ||||||||||||   ||| |||| |||||||||| ||||| || | || ||||||||    |||| ||||||||||  |||||||||||    
T  39297637 ttttattgatacatttgttgatatcctaatatataaatgaaaataaaatataatgtttacaaaaactttaaattttttattttgatcatatgtattattt 39297538  T
Q  231 tt--ctgtaaatgatgacttttataattatatagtatt 266  Q
    ||   |||||||  |||||||||| |||||||||||||    
T  39297537 tttgttgtaaattgtgacttttatgattatatagtatt 39297500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 18928623 - 18928485
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtgg-atgaaagcaaagagagataggagattca 99  Q
    ||||||||||| ||||||| ||||||| |||||||| ||||| ||||| |||||| | || ||||| |||| |||||   || |||||| | | ||||||    
T  18928623 tgattcaattttagatatgcatcagtagaattgtttctcgatgaaccacttaaaatt-atattttttgtgggatgaagataacgagagagatgtgattca 18928525  T
Q  100 atcaatcaatagtaaacaaactttgtattgagttctttta 139  Q
     | |||||||| |||| ||| ||||| |||||||||||||    
T  18928524 gttaatcaatattaaataaaatttgtgttgagttctttta 18928485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 22470724 - 22470822
Alignment:
Q  135 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt---tttatattttgatcgcatgtattattt 230  Q
    ||||| |||||  ||||||||||   |||||||  |||||| |||||||||||||||||  ||||||||   ||| |||||||||| ||||||||||||    
T  22470724 ttttaatgatgtttttgttgatatcctaacatagaaatgaatatagaatatgatttatacgaaaactttatatttttattttgatcacatgtattattt 22470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 32579149 - 32579186
Alignment:
Q  162 aacatatgaatgaaaatagaatatgatttatataaaaa 199  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  32579149 aacatatgaaagaaaatagaatatgatttataaaaaaa 32579186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 39297724 - 39297643
Alignment:
Q  27 ataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaa 108  Q
    |||||| ||||||||| | |||||||||||| |||||| | |||||||||   || |||||| |  ||||||||||||||||    
T  39297724 ataattatttttcgatgagccaattaaaaattatgtttattgtggatgaagataatgagagagacaagattcaatcaatcaa 39297643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 12006871 - 12006992
Alignment:
Q  115 acaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt----tttatat 210  Q
    ||||| ||||| | ||||||||||| | |||| ||| ||||||    ||||||||||| |||||| |||||  ||||||  ||||||||    ||| |||    
T  12006871 acaaaatttgtgtagagttcttttaattatgcttttcttgatatcccaacatatgaataaaaatataatatagtttataagaaaactttacattttttat 12006970  T
Q  211 tttgatcgcatgtattattttt 232  Q
    ||||||| ||||||||||||||    
T  12006971 tttgatcacatgtattattttt 12006992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 394223 - 394425
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||  ||| | |||||||||||    
T  394223 tgattcgatttaagatatgaatcactataattttttttcgattaaccaattaaaaatcatgtttttagtggatgaaagtaacaagaaagaggagattcaa 394322  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaac 200  Q
    |||||||| | |||||||| ||||| |||||||||| ||||||| ||||||||||||| |||||||| |||| |||||| |||| ||||||||  |||||    
T  394323 tcaatcaacattaaacaaattttgttttgagttcttgtattgatccatttgttgataccataacataagaattaaaatataatacgatttatacgaaaac 394422  T
Q  201 ttt 203  Q
    |||    
T  394423 ttt 394425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 262
Target Start/End: Complemental strand, 44798254 - 44797994
Alignment:
Q  4 ttcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatca 103  Q
    ||||||||||||||||||||| ||||||| ||| || ||||||||||||||| | ||||||||||||||| |||| || |||||| |  |||||||||||    
T  44798254 ttcaatttaagatatgaatcactataattatttctcaattaaccaattaaaatttatgtttttggtggataaaagtaacgagagaga--agattcaatca 44798157  T
Q  104 atcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 203  Q
    |||||   |||| ||||||||| |||||||||||||||||  ||||||||||||   ||||||||||||||||||| |||||||||||||  ||||||||    
T  44798156 atcaacgttaaataaactttgttttgagttcttttattgaaacatttgttgatatcctaacatatgaatgaaaatataatatgatttatacgaaaacttt 44798057  T
Q  204 ----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatag 262  Q
        ||| |||||||||| |||||||| ||||| |||||||  |||||||||| |||||||||    
T  44798056 acaatttttattttgatcacatgtattttttttttgtaaattgtgacttttatgattatatag 44797994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 31397248 - 31396988
Alignment:
Q  5 tcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaatcaa 104  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||| |||||| ||||||| || |||||| | || ||||||||||    
T  31397248 tcaatttaagatataaatcactataattgtttttcaattaaccaattgaaaattatgttattggtgaatgaaagtaacgagagagaagatattcaatcaa 31397149  T
Q  105 tcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt-- 202  Q
    |||| | |||||||||||||| |||||||||||||||||||||||||||||||    ||||||| ||| |||||| |||||||||||||| |||| ||      
T  31397148 tcaacattaaacaaactttgttttgagttcttttattgatgcatttgttgatatcccaacatataaataaaaataaaatatgatttatatgaaaatttta 31397049  T
Q  203 --ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatag 262  Q
      |||| |||||||||| || |||||| |||| |||||||  |||||||||| |||||||||    
T  31397048 tattttttattttgatcacaagtattactttt-tgtaaattgtgacttttatgattatatag 31396988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 48138560 - 48138652
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggag 94  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||  || |||||| |||||    
T  48138560 tgattcaatttaagatatgaatcactataattatttttcga-taaccaattaaaaattatgtttttggtggatgaaaataacgagagagaggag 48138652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 24699810 - 24699882
Alignment:
Q  2 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatga 75  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24699810 gattcaatttaagatatgaattactataattgtttttcga-taaccaattaaaaattatgtttttggtggatga 24699882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 47277897 - 47278002
Alignment:
Q  97 tcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataa 196  Q
    |||||||||||| | ||| |||||||||| |||| |||||||||||| |||||||||||||   ||| |||||| ||||||||||| || ||||||| ||    
T  47277897 tcaatcaatcaacattaatcaaactttgttttgaattcttttattgaagcatttgttgatatcctaatatatgagtgaaaatagaaaattatttatacaa 47277996  T
Q  197 aaactt 202  Q
    ||||||    
T  47277997 aaactt 47278002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 46192339 - 46192231
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    ||||| ||||||||||||||||||  ||||||||||||| ||||| ||  ||||||  ||||||||| |||||||||| || |||| | | |||||||||    
T  46192339 tgatttaatttaagatatgaatcacaataattgtttttctattaatcatataaaaaatatgtttttgttggatgaaagtaacgagatagatgagattcaa 46192240  T
Q  101 tcaatcaat 109  Q
    || ||||||    
T  46192239 tctatcaat 46192231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 48138659 - 48138767
Alignment:
Q  161 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 256  Q
    ||||||||||| ||||||| |||||||||||||  |||||||    |||| |||||||||| ||| |||||||||| |||||||  ||| |||||| |||    
T  48138659 taacatatgaacgaaaatataatatgatttatacgaaaactttacattttttattttgatcacatatattattttt-tgtaaattgtgaattttatgatt 48138757  T
Q  257 atatagtatt 266  Q
    ||||||||||    
T  48138758 atatagtatt 48138767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16817901 - 16817964
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttt 65  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||| | |||||||    
T  16817901 tgatttaatttaagat-tgaatcagtataattgtttttcgattaatcaatttaaatttatgtttt 16817964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 22201255 - 22201353
Alignment:
Q  95 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 193  Q
    ||||||| ||||||||||| ||||| ||||| ||||| | ||||| |||| | | || ||||| | |||  |||||||||||||| |||||||||||||    
T  22201255 attcaattaatcaatagtagacaaaatttgtgttgagctattttaatgatacttctgctgatattctaatgtatgaatgaaaatataatatgatttata 22201353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 22236566 - 22236468
Alignment:
Q  95 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 193  Q
    ||||||| ||||||||||| ||||| ||||| ||||| | ||||| |||| | | || ||||| | |||  |||||||||||||| |||||||||||||    
T  22236566 attcaattaatcaatagtagacaaaatttgtgttgagctattttaatgatacttctgctgatattctaatgtatgaatgaaaatataatatgatttata 22236468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25482665 - 25482609
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaat 57  Q
    ||||||||||| ||||||| |||| ||||||||||||||||| || || ||||||||    
T  25482665 tgattcaattttagatatgcatcaatataattgtttttcgatgaaacacttaaaaat 25482609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 9229488 - 9229429
Alignment:
Q  203 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagt 263  Q
    |||| |||||||||| |||||||||||||| |||||||   ||||||||| ||||||||||    
T  9229488 ttttttattttgatcacatgtattattttt-tgtaaatcgcgacttttatgattatatagt 9229429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 7732281 - 7732545
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||| |   ||||| |||||||| ||    
T  7732281 tgattcaatttaagatatgaatcactataactgtttttcgattagccaattaaaaattatgtttttggtggatgaaagta---agagagaggagatttaa 7732377  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaa-- 198  Q
    |||||||| |  |||||||||| || || ||||||||||||||||||||| |||||| | ||||||||||||||||||| |  |||||||||| ||||      
T  7732378 tcaatcaacatgaaacaaacttcgttttaagttcttttattgatgcatttattgatattctaacatatgaatgaaaatata--atgatttatacaaaaaa 7732475  T
Q  199 ---acttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
       || ||||| |||||||| | ||  |||||||||| | |||||  |||||||||| |||||||||||||    
T  7732476 tttacatttttttattttgaccacacatattattttt-tataaattgtgacttttatgattatatagtatt 7732545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 12118372 - 12118496
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||| | || || | |||  |||||||     
T  12118372 tgattcaatttaagatatgaatcagtataactgtttttcgattaactaattaaaaattatatttttggtggatgaaggtaatgaaaaatataagattcag 12118471  T
Q  101 tcaatcaatagtaaacaaactttgt 125  Q
    |||| ||||| |||||||| |||||    
T  12118472 tcaaccaatattaaacaaaatttgt 12118496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 12848498 - 12848318
Alignment:
Q  20 aatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaa--agagagataggagattcaatcaatcaatagtaaaca 117  Q
    ||||| |||||||||||||||||||| ||||| ||||| ||||||||| |||||||  | ||  |||||||||    ||||||||||| || | ||||||    
T  12848498 aatcaatataattgtttttcgattaatcaatttaaaattatgtttttgttggatgagggtaacgagagagata----attcaatcaattaacattaaaca 12848403  T
Q  118 aactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt 202  Q
    |||||||| |||||||| |||||||||| ||||||||||    ||| |||||||| |||||||||||| |||||||  |||||||    
T  12848402 aactttgttttgagttcctttattgatgtatttgttgatgtcctaatatatgaataaaaatagaatataatttatacgaaaactt 12848318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 41634469 - 41634610
Alignment:
Q  32 tgtttttcgattaaccaattaaaaatcatgtttttg-gtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattga 130  Q
    ||||| ||||||||  |||||||||  || |||||| ||||||||| | || |||||| |||| |||||||||||||| | |||||||||||| | || |    
T  41634469 tgtttatcgattaattaattaaaaactatttttttgtgtggatgaaggtaacgagagagaggacattcaatcaatcaacattaaacaaactttattttta 41634568  T
Q  131 gttcttttattgatgcatttgttgatactataacatatgaat 172  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  41634569 gttcttttattgatgcatttgttgatattctaacatatgaat 41634610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 42990744 - 42990830
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagaga 88  Q
    |||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||| |||||||||||||||||||| || ||||||    
T  42990744 tgattcaatttaagatatgaatcactataattgttgttcga-taactaattaaaaattatgtttttggtggatgaaagtaacgagaga 42990830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 27972051 - 27972159
Alignment:
Q  2 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaa--agagagataggagattca 99  Q
    |||||||||||||||||||||| ||| |||| ||||| || ||||||||| ||||  ||||||||||||||| || | ||  ||||||| ||||||||||    
T  27972051 gattcaatttaagatatgaatcggtaaaattattttttgactaaccaattcaaaactatgtttttggtggataaaggtaacgagagagaaaggagattca 27972150  T
Q  100 atcaatcaa 108  Q
    |||||||||    
T  27972151 atcaatcaa 27972159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 39329596 - 39329670
Alignment:
Q  116 caaactttgtattgagttcttttattgatgcatttgttgata-ctataacatatgaatgaaaatagaatatgattt 190  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  39329596 caaactttgttttgaattcttttatcgatgcatttgttgatatcta-aatatatgaatgaaaatagaatataattt 39329670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 8802777 - 8802687
Alignment:
Q  103 aatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 193  Q
    |||||||| |||||||| ||||| ||||||||||||  |||||| | | ||||||   |||||||||||| |||||| |||||||||||||    
T  8802777 aatcaatattaaacaaaatttgtgttgagttcttttgatgatgcttctattgatatcctaacatatgaataaaaatataatatgatttata 8802687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 41634663 - 41634766
Alignment:
Q  162 aacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatta 257  Q
    ||||||||||||||||||||||||||||||||  ||||| |    |||| | |||||||| |||||||| || || | ||||| ||||||||||| ||||    
T  41634663 aacatatgaatgaaaatagaatatgatttatacgaaaacattacattttttgttttgatcacatgtatt-ttcttttttaaattatgacttttatgatta 41634761  T
Q  258 tatag 262  Q
    |||||    
T  41634762 tatag 41634766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 36906776 - 36906852
Alignment:
Q  127 ttgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 203  Q
    ||||||||||||| | |||  ||||||||||   ||||| ||||||||||||| |||||| ||||||| ||||||||    
T  36906776 ttgagttcttttaataatgtttttgttgatatcctaacaaatgaatgaaaatataatatgctttatatgaaaacttt 36906852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 39700923 - 39700891
Alignment:
Q  161 taacatatgaatgaaaatagaatatgatttata 193  Q
    |||||||||||||||||||||||||||||||||    
T  39700923 taacatatgaatgaaaatagaatatgatttata 39700891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 5836648 - 5836750
Alignment:
Q  85 gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaata 184  Q
    |||| |||||||||||| |||||  | || | ||| ||||| ||||||||||||| |||||| | ||||||||   |||||| ||||||||| || ||||    
T  5836648 gagagaggagattcaattaatcaccattagataaaatttgtgttgagttcttttaatgatgcttatgttgatatcctaacatctgaatgaaagtacaata 5836747  T
Q  185 tga 187  Q
    |||    
T  5836748 tga 5836750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13407322 - 13407268
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 55  Q
    ||||||||||| ||||||  |||||||||||||||| ||||| ||||| ||||||    
T  13407322 tgattcaattttagatatacatcagtataattgtttctcgatgaaccagttaaaa 13407268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 31489588 - 31489382
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaag---caa-agagagataggagat 96  Q
    ||||||||||||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |   ||| |||||||||  ||||    
T  31489588 tgattcaatttaagacacgaatcagtatgattgtttttcgattaaccaattaaaatttatgtttttggtggatgaaggtgacaagagagagataatagat 31489489  T
Q  97 tcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataa 196  Q
    | |||||||||| | |||||||| ||||| ||||||||||||||||||||||||| |||||   ||||||||||||||||||| |||||||||||||  |    
T  31489488 ttaatcaatcaacattaaacaaattttgttttgagttcttttattgatgcatttgctgatatcttaacatatgaatgaaaataaaatatgatttatacga 31489389  T
Q  197 aaacttt 203  Q
    |||||||    
T  31489388 aaacttt 31489382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 24611522 - 24611339
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaa--agagagataggagattc 98  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||||| ||  || |||| |||||||||    
T  24611522 tgattcaatttaatatatgaatcactataattgtttttcaattaaccaattaaaaattatgtttttggtggttgaaagtaacgagggagagaggagattc 24611423  T
Q  99 aatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 182  Q
    |||||||||| | |||||||||||  | ||||||||||||||||| ||||||||||||  | ||| |||||||| |||||||||    
T  24611422 aatcaatcaacattaaacaaacttgattttgagttcttttattgaagcatttgttgattttctaatatatgaataaaaatagaa 24611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 50387245 - 50387442
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    ||||||||||||| ||||||| || ||||||| |||||  ||||||||||||||||| |||||||||||||||||||| || ||||||  ||||||||||    
T  50387245 tgattcaatttaaaatatgaaccactataattattttt--attaaccaattaaaaattatgtttttggtggatgaaagtaacgagaga--ggagattcaa 50387340  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaac 200  Q
    |||||||| | |||||||||||| | | |||||| |||||||||| ||||||| ||| | |||||||| ||||||||||||||||||||||||  |||||    
T  50387341 tcaatcaacattaaacaaactttatct-gagttcctttattgatgtatttgttaatattctaacatataaatgaaaatagaatatgatttatacgaaaac 50387439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 21842595 - 21842863
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaag--caaagagagataggagattc 98  Q
    ||||| |||||||||||||||||  ||||||||| |||||||||||||| ||||||| || |||||||||||| ||||  | |||||||| |||| ||||    
T  21842595 tgattaaatttaagatatgaatcgctataattgtatttcgattaaccaaataaaaattatatttttggtggataaaagtaccaagagagaaaggatattc 21842694  T
Q  99 aatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaa 198  Q
    |||||||||| | |||| ||||||||| |  |||| ||||||||||| |||||||||||    ||| |||||||||||||| ||||| |||| ||   |     
T  21842695 aatcaatcaacattaaataaactttgtttatagtttttttattgatgtatttgttgatatccaaacttatgaatgaaaataaaatataatttttacgtag 21842794  T
Q  199 acttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    |||||     || |||||||||  ||||||||||||||| ||||||  |||||||||| |||||||||||||    
T  21842795 actttacaacttttattttgat--catgtattatttttc-gtaaatcgtgacttttatgattatatagtatt 21842863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 94 - 266
Target Start/End: Original strand, 47014501 - 47014676
Alignment:
Q  94 gattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 193  Q
    ||||||| ||||||| | ||||| |||||||| || ||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||     
T  47014501 gattcaaccaatcaacattaaacgaactttgtttttagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatcgaatatgatttatg 47014600  T
Q  194 taaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
      ||| |||    |||| ||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||    
T  47014601 cgaaatctttacattttttattttgatcgcatgtattattttt-tgtaaattataacttttatgattatatagtatt 47014676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 21858238 - 21858504
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagattcaa 100  Q
    ||||| |||||||||||||||||  ||||||||| |||||||||||||| ||||||| || |||||||||||| |||| |  |||||| |||| ||||||    
T  21858238 tgattaaatttaagatatgaatcgctataattgtatttcgattaaccaaataaaaattatatttttggtggataaaagtaccgagagagaggatattcaa 21858337  T
Q  101 tcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaac 200  Q
    |||||||| | |||| ||||||||| |   ||| ||||||||||| | |||||||||    ||| |||||||||||||||||||| |||| ||   | ||    
T  21858338 tcaatcaacattaaataaactttgtttattgtttttttattgatgtagttgttgatatccaaacttatgaatgaaaatagaatataatttttacgtagac 21858437  T
Q  201 ttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    |||     || |||||||||  ||||||||||||||| ||||||  |||||||||| |||||||||||||    
T  21858438 tttacaacttttattttgat--catgtattatttttc-gtaaatcgtgacttttatgattatatagtatt 21858504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 266
Target Start/End: Original strand, 21853839 - 21854013
Alignment:
Q  94 gattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 193  Q
    ||||||||||||||| | |||| ||| ||||| | |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  21853839 gattcaatcaatcaacattaaataaaatttgtttagagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatagaatatgatttata 21853938  T
Q  194 taaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
      |  ||||     ||| ||||||||||  |||||||| ||||||||||||  |||||||||| |||||||||||||    
T  21853939 -gatcacttcacaatttttattttgatcatatgtatta-ttttctgtaaatcgtgacttttatgattatatagtatt 21854013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 47014323 - 47014402
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaa 81  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  47014323 tgattcaattta-gatataaatcattataattgtttttcgattaaccaattaaaaattatgttttgggtggatgaaagcaa 47014402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 43471835 - 43471921
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagaga 88  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||| |||||||||| || ||||||    
T  43471835 tgattcaatttaagatatgaatcactataactgtttttcga-taaccaattaaaaattatgtttttgttggatgaaagtaacgagaga 43471921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 1341735 - 1341626
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagca--aagagagataggagattc 98  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||| |||||||||||| |  ||| |||  |||||||||    
T  1341735 tgattcattttaagatatgaatcattataattgtttttcgattaactaattaaaaattatgctttgggtggatgaaagtaacaagtgagggaggagattc 1341636  T
Q  99 aatcaatcaa 108  Q
    ||| ||||||    
T  1341635 aataaatcaa 1341626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 8913548 - 8913685
Alignment:
Q  20 aatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagca--aagagagataggagattcaatcaatcaatagtaaaca 117  Q
    ||||| |||||||||||||||||||||||||||||||| ||| ||||||| ||  |  | |  |||||||| ||   |||||||||||||| |  ||| |    
T  8913548 aatcaatataattgtttttcgattaaccaattaaaaattatg-ttttggttgactagggtaagaagagagagagacaattcaatcaatcaacataaaata 8913646  T
Q  118 aactttgtattgagttcttttattgatgcatttgttgat 156  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  8913647 aactttgttttgagtttttttattgatgcatttgttgat 8913685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 53530673 - 53530563
Alignment:
Q  93 agattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 192  Q
    ||||||||| |||||||| |||||||| ||||| ||||||||||||| | || | | || | |||  |||| |||||||||||||| |||||||||||||    
T  53530673 agattcaattaatcaatattaaacaaaatttgtgttgagttcttttaataatacttctgctaatatcataagatatgaatgaaaatcgaatatgatttat 53530574  T
Q  193 ataaaaacttt 203  Q
    |  ||||||||    
T  53530573 acgaaaacttt 53530563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 265
Target Start/End: Original strand, 24121239 - 24121372
Alignment:
Q  135 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattt 230  Q
    |||||||||||||||||||||| |  ||| |||||||| ||||||||||||| |||||   |||| ||    ||||||||||||||  ||| ||||||||    
T  24121239 ttttattgatgcatttgttgattccctaatatatgaataaaaatagaatatgttttattcgaaaattttatattttatattttgataacatatattattt 24121338  T
Q  231 ttctgtaaatgatgacttttataattatatagtat 265  Q
    ||  ||||||  |||||||||| ||||||||||||    
T  24121339 tt-ggtaaattgtgacttttatgattatatagtat 24121372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 24121124 - 24121235
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcg-attaaccaattaaaaatcatg-tttttggtggatgaaagcaa--agagagataggagat 96  Q
    |||||||||||||||||||||||| | |||||||||||||  ||||||||||||||||  || ||||| || |||||| | ||  || |||| |||||||    
T  24121124 tgattcaatttaagatatgaatcactgtaattgtttttcgctttaaccaattaaaaattgtgtttttttgttgatgaatgtaacgagggagagaggagat 24121223  T
Q  97 tcaatcaatcaa 108  Q
    ||||||||||||    
T  24121224 tcaatcaatcaa 24121235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 43471932 - 43471974
Alignment:
Q  161 taacatatgaatgaaaatagaatatgatttatataaaaacttt 203  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  43471932 taacatatgaatgaaaatagaatatgatttatatgaaaacttt 43471974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 16343146 - 16343210
Alignment:
Q  202 tttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    ||||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  16343146 tttttttattttgatcacatgtattatttttttgtaaattgcgacttttatgattatatagtatt 16343210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 1341622 - 1341547
Alignment:
Q  161 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 232  Q
    ||||||||||||||||||| |||||| ||||||| |||||||    |||| |||||||||| | ||||||||||||    
T  1341622 taacatatgaatgaaaataaaatatgttttatatgaaaactttacattttttattttgatcacgtgtattattttt 1341547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 2111477 - 2111558
Alignment:
Q  15 atatgaatcagtataattgttttt-cgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagataggagat 96  Q
    |||||||||| ||||||||||||| |||| |||||||||||||| |||||||| |||||  |||| || |||||| |||||||    
T  2111477 atatgaatcactataattgttttttcgat-aaccaattaaaaattatgttttttgtggaataaagtaacgagagagaggagat 2111558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 20619322 - 20619452
Alignment:
Q  1 tgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatcatgtttttggtggatgaaagcaaagagagatag-gagattca 99  Q
    ||||||||||| ||||||| || ||||||||| ||||||||| ||||| || ||||| || ||| | |||||||||   | ||||||| || ||||||||    
T  20619322 tgattcaattttagatatgcataagtataattatttttcgatcaaccactt-aaaattatatttcttgtggatgaagagagagagagagagagagattca 20619420  T
Q  100 atcaatcaatagtaaacaaactttgtattgag 131  Q
    || || || || || ||||| |||||||||||    
T  20619421 attaaccactaatagacaaaatttgtattgag 20619452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 36172081 - 36172019
Alignment:
Q  203 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    |||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  36172081 ttttttattttgatcacatgtattattttt-tgtaaattgcgacttttatgattatatagtatt 36172019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 35433483 - 35433547
Alignment:
Q  201 ttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    |||||| |||||||||| |||||||||||||| |||||||   || |||||| |||||||||||||    
T  35433483 ttttttttattttgatcacatgtattattttt-tgtaaatcgcgatttttatgattatatagtatt 35433547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 29324144 - 29324196
Alignment:
Q  3 attcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 55  Q
    ||||||||| ||||||| |||| ||||||||||| ||||| ||||| ||||||    
T  29324144 attcaattttagatatgcatcaatataattgtttctcgatgaaccacttaaaa 29324196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 53789 - 53854
Alignment:
Q  201 ttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 266  Q
    |||||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  53789 ttttttttattttgatcacatgtattatttttttgtaaattgcgacttttatgattatatagtatt 53854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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