View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_low_15 (Length: 324)
Name: NF6781_low_15
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 4824630 - 4824931
Alignment:
| Q |
18 |
ctaactacggaacacatgaccttgatcagtggatg-----agatttacttgacagttgacagtaactccaagcaatggaatgtactcccctgttcagttc |
112 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4824630 |
ctaactacggaatacatgaccttgatcagtggatggtttcagatttacttgacagttgacagtaactccaagcaatggaatgtactcccttgttcagttc |
4824729 |
T |
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| Q |
113 |
gataccagaggataggctaccatggaagtaagagaaaaatgatatatattttttccccctgtaaaa-gcgcatataaagtgtgtacaagtaacatattta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |
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| T |
4824730 |
gataccagaggataggctaccatggaagtaagagaaaaatgatatatattttttccct-tgtaaaaagcgcatataaagtgtgtacaagtaacatcttta |
4824828 |
T |
|
| Q |
212 |
ataattccagcatgaacaaccgggggtttttggcgacgaatatggaaggcaaaggtttctaccaatgcgaggcatcatgtgtcctaaccaatgtgtcaaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4824829 |
ataattccagcatgaacaaccgggggtttttggcgacgaatatggaaggcaaaggtttctaccaatgcgaggcatcatgtgtcctaaacaatgtgtcaaa |
4824928 |
T |
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| Q |
312 |
tat |
314 |
Q |
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||| |
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| T |
4824929 |
tat |
4824931 |
T |
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