View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6781_low_17 (Length: 291)
Name: NF6781_low_17
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_17 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 291
Target Start/End: Original strand, 37807160 - 37807449
Alignment:
| Q |
2 |
atcaaccgaattaaccgatttacgcgtgtagataaatgcaactgaaggtggacnnnnnnnccacttatgcaaattacttgtgtaaaaatcagctccaatc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807160 |
atcaaccgaattaaccgatttacgcgtgtagataaatgcaaccgaaggtggacaaaaaaaccacttatgcaaattacttgtgtaaaaatcagctccaatc |
37807259 |
T |
|
| Q |
102 |
tcttgcatatcaacgcgcggggtgcaccctaccgcatgagctgcatcaacaaaaacttgatcaacaccttcctcgcgacaaatcttaactaactctttca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807260 |
tcttgcatatcaacgcgcggggtgcaccctaccgcatgagctgcatcaacgaaaacttgatcaacaccttcctcgcgacaaatcttaactaactctttca |
37807359 |
T |
|
| Q |
202 |
ccggaatcaccatgcttggcatggaagtcacatgatcaataaccgctaatctaactttattactactaccttcgctctttgttttttcca |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807360 |
ccggaatcaccatgcttggcatggaagtcacatgatcaataaccgctaatctaactttattactactaccttcgctctttgttttttcca |
37807449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 255
Target Start/End: Complemental strand, 45784107 - 45783917
Alignment:
| Q |
62 |
ccacttatgcaaattacttgtgtaaaaatcagctccaatctcttgcatatcaacgcgcggggtgcaccctaccgcatgagctgcatcaacaaaaacttga |
161 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||| |||||||||||||| || || || | | |||||| |||||||||||||| || |
|
|
| T |
45784107 |
ccacttatgcaaattactggtataaaaatcagcaccaatatcttgcatatcaac---atcagtacagccaattgaatgagcagcatcaacaaaaacctgt |
45784011 |
T |
|
| Q |
162 |
tcaacaccttcctcgcgacaaatcttaactaactctttcaccggaatcaccatgcttggcatggaagtcacatgatcaataaccgctaatctaa |
255 |
Q |
| |
|
|||||||||||||| | |||||||| || || || ||||| |||||||| | | ||||| ||||| ||||||||||| || ||||| |||| |
|
|
| T |
45784010 |
tcaacaccttcctctctacaaatctgaatcaattccttcacaggaatcacaacacaaggcatagaagtaacatgatcaatcacagctaacctaa |
45783917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University