View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6781_low_18 (Length: 288)

Name: NF6781_low_18
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6781_low_18
NF6781_low_18
[»] chr8 (1 HSPs)
chr8 (1-288)||(10551371-10551658)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 10551371 - 10551658
Alignment:
Q  1 tggtgagaaagactaactatgctatattgtcttccttgaggttaaaatgtgccggcatgttctttggttttgttttgagaaatttttctttatggaagta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  10551371 tggtgagaaagactaactatgctatattgtcttccttgaggttaaaatgtgccgacatgttctttggttttgtttttagaaagttttctttatggaagta 10551470  T
Q  101 taacctaacacgtaagggaccataggagctgttgtcactcaaccttcctaatttgattctactactaaaccatccatcacaacaaagccttttatccctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10551471 taacctaacacgtaagggaccataggagctgttgtcactcaaccttcctaatttgattctactactaaaccatccatcacaacaaagccttttatccctc 10551570  T
Q  201 cacacaatgtgttttgcatttttatgtttttagaggtggtggtattctaaatggtggttgtgggttgttgatgtatgtgaaatgatgt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10551571 cacacaatgtgttttgcatttttatgtttttagaggtggtggtattctaaatggtggttgtgggttgttgatgtctgtgaaatgatgt 10551658  T

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