View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_low_19 (Length: 271)
Name: NF6781_low_19
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_19 |
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| [»] chr1 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 271
Target Start/End: Complemental strand, 41200013 - 41199749
Alignment:
| Q |
6 |
actgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgtt |
105 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41200013 |
actgataagaaagaatgaatcgtgtgatatgcatttattacgcaaaacatatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgtt |
41199914 |
T |
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| Q |
106 |
ccaacttacacattgtgaagactcctaaaacaaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattgctgattac |
205 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41199913 |
ccaacttacacattgtgaagactcctaaaacaa-gttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattactgattac |
41199815 |
T |
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| Q |
206 |
tacagtagcaagagagaagagcttatgtgtttgcctcgcgaagcaaagataatttacatttatatt |
271 |
Q |
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| T |
41199814 |
tacagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatt |
41199749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 271
Target Start/End: Complemental strand, 1041701 - 1041437
Alignment:
| Q |
6 |
actgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgtt |
105 |
Q |
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| T |
1041701 |
actgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgtt |
1041602 |
T |
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| Q |
106 |
ccaacttacacattgtgaagactcctaaaacaaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattgctgattac |
205 |
Q |
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| T |
1041601 |
ccaacttacacattgtgaagactgctaaaacaa-gttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattac |
1041503 |
T |
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| Q |
206 |
tacagtagcaagagagaagagcttatgtgtttgcctcgcgaagcaaagataatttacatttatatt |
271 |
Q |
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| T |
1041502 |
tacagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatt |
1041437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 41192766 - 41192634
Alignment:
| Q |
6 |
actgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgtt |
105 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41192766 |
actgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgtt |
41192667 |
T |
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| Q |
106 |
ccaacttacacattgtgaagactcctaaaacaa |
138 |
Q |
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| T |
41192666 |
ccaacttacacattgtgaagactgctaaaacaa |
41192634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 41407451 - 41407385
Alignment:
| Q |
6 |
actgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
72 |
Q |
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|||||| ||||||||||||| ||||| ||||| || |||||||||||| ||||||||||||||||| |
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| T |
41407451 |
actgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactaatgagaaatctaactga |
41407385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 271
Target Start/End: Complemental strand, 33323292 - 33323028
Alignment:
| Q |
6 |
actgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgtt |
105 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323292 |
actgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgtt |
33323193 |
T |
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| Q |
106 |
ccaacttacacattgtgaagactcctaaaacaaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattgctgattac |
205 |
Q |
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| T |
33323192 |
ccaacttacacattgtgaagactgctaaaacaa-gttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattac |
33323094 |
T |
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| Q |
206 |
tacagtagcaagagagaagagcttatgtgtttgcctcgcgaagcaaagataatttacatttatatt |
271 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33323093 |
tacagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatt |
33323028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 3483 - 3549
Alignment:
| Q |
6 |
actgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
72 |
Q |
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|||||| ||||||||||||| ||||| ||||| || |||||||||||| |||||||||||||||||| |
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| T |
3483 |
actgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
3549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 24047 - 24113
Alignment:
| Q |
6 |
actgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
72 |
Q |
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|||||| ||||||||||||| ||||| ||||| || |||||||||||| |||||||||||||||||| |
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| T |
24047 |
actgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
24113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 16700400 - 16700496
Alignment:
| Q |
33 |
tatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactcc |
130 |
Q |
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||||||||||||| ||||||| |||||||| ||||||||| |||| |||||| || ||| | ||||| ||||| ||||| ||||||||| |||||||| |
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| T |
16700400 |
tatgcatttattatgcaaaactgatgagaagtctaactgatattcgaaaacatatcagtcgcatcctgctgtttcaactgacacattgt-aagactcc |
16700496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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