View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_low_2 (Length: 730)
Name: NF6781_low_2
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 26 - 301
Target Start/End: Original strand, 45159828 - 45160102
Alignment:
| Q |
26 |
gggtacaaatcattacttcttttttaaatacaaaatataatccaggggattgcttttacattatctcatccttgattttgctcattaatagacaatatat |
125 |
Q |
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| T |
45159828 |
gggtacaaatcattacttcttttttaaatacaaaatataatccaggggattgcttttacattatctcatccttgattttgctcattaaaagacaatattt |
45159927 |
T |
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| Q |
126 |
gaagaagaaaaaatacattcgtctttccattatttacgcttacattttcttgtttgcagctagcatacctttgtatttgtatcccttccttaaaacaaaa |
225 |
Q |
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| T |
45159928 |
gaagaa-aaaaaatacattcgtctttccattatttacacttacattttcttgtttgcagctagcatacctttgtatttgtatcccttccttaaaacaaaa |
45160026 |
T |
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| Q |
226 |
gacaagtcatcgcagtttgagtatttaaggcttgcaaatctcggagtcattggtgccttggtgaaggtattacgtg |
301 |
Q |
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| T |
45160027 |
gacaagtcaccgcagtttgagtatttaaggcttgcaagtctcggagtcattggtgccttggtgaaggtattacgtg |
45160102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 346 - 729
Target Start/End: Original strand, 45160157 - 45160519
Alignment:
| Q |
346 |
ttatagcgccttgaatgtgtcatttacataaaataaaatttgtaccagtaaattattgatcacattcatnnnnnnnncactaatcactaattatttttaa |
445 |
Q |
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| T |
45160157 |
ttatagcgccttgaatgtgtcatttacataacataaaatttgtaccaataaattattgatcacattcatacaaaaaacactaatcactaattattttt-- |
45160254 |
T |
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| Q |
446 |
aactaattatttttaaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttataatgctcttggtatgttttcaattatatc |
545 |
Q |
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| T |
45160255 |
--------------aaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttatcatgctcttg-----ttttcaattatatc |
45160335 |
T |
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| Q |
546 |
tatttaagtttcaaattcagtcttacaaaaaatttcatatctagtatttgagagttacaaatataacttgtgaggatgaatttatatacatcgttaatga |
645 |
Q |
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| T |
45160336 |
tatttaagtttcaaattcagtctttcaaaaaatttcatatctagtatttgagagttacaaatataacttgttaggatgaacttatatacatcgttaatga |
45160435 |
T |
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| Q |
646 |
attnnnnnnnttctactatttattacatatttaccatttgtaataatttccttttgttgatacttgatattcacaggataacac |
729 |
Q |
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| T |
45160436 |
attaaaaaaattctgctatttattacatatttaccatttataataatttccttttgttgatacttgatattcacaggataacac |
45160519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 3e-50; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 153 - 298
Target Start/End: Complemental strand, 24128476 - 24128331
Alignment:
| Q |
153 |
cattatttacgcttacattttcttgtttgcagctagcatacctttgtatttgtatcccttccttaaaacaaaagacaagtcatcgcagtttgagtattta |
252 |
Q |
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| T |
24128476 |
cattatttaaacttacattttcttgtttgcagctagcatgcctttgtatttgtatcccttccttaaaacaaaagaaaagtcaccacagtttgagtattta |
24128377 |
T |
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| Q |
253 |
aggcttgcaaatctcggagtcattggtgccttggtgaaggtattac |
298 |
Q |
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| T |
24128376 |
aggtttgcaagtcttggagtcattggtgctttagtgaaggtattac |
24128331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 447 - 544
Target Start/End: Complemental strand, 24128193 - 24128096
Alignment:
| Q |
447 |
actaattatttttaaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttataatgctcttggtatgttttcaattatat |
544 |
Q |
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| T |
24128193 |
actaattatttttaaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttatcatgctcttggtgtgctttcaattatat |
24128096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 533 - 648
Target Start/End: Complemental strand, 24128070 - 24127954
Alignment:
| Q |
533 |
tttcaattatatctatttaagtttcaaattcagtcttacaaaaaatttcatatct--agtatttgagagttacaaatataacttgtgaggatgaatttat |
630 |
Q |
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| T |
24128070 |
tttcaattatatctatttaagtttcaaattcattcttataaaag-tttcatatatttagtatctgagagttacaaatataacttgttaggatgaattcat |
24127972 |
T |
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| Q |
631 |
atacatcgttaatgaatt |
648 |
Q |
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| T |
24127971 |
atacgtcattaattaatt |
24127954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 683 - 730
Target Start/End: Complemental strand, 24127792 - 24127745
Alignment:
| Q |
683 |
ttgtaataatttccttttgttgatacttgatattcacaggataacacc |
730 |
Q |
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| T |
24127792 |
ttgtaataatttccttttgttgatacttgatattcacaggttaacacc |
24127745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 9518240 - 9518360
Alignment:
| Q |
178 |
tttgcagctagcatacctttgtatttgtatcccttccttaaaacaaaagacaagtcatcgcagtttgagtatttaaggcttgcaaatctcggagtcattg |
277 |
Q |
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| T |
9518240 |
tttgcagctagcatgcctttatatttttatccattccttcaaacaacaagcgagttagcccaatttgagcatttaagacttgctagtcttggagtcatcg |
9518339 |
T |
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| Q |
278 |
gtgccttggtgaaggtattac |
298 |
Q |
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|||| |||||||||||||||| |
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| T |
9518340 |
gtgcgttggtgaaggtattac |
9518360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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