View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_low_21 (Length: 254)
Name: NF6781_low_21
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 5217267 - 5217509
Alignment:
| Q |
8 |
tggacatcaaagacgtttttcattagaaatgtcagtgttatgacataatatattatgggtttttctatcatnnnnnnnnnnnnngttgctaaagaagtta |
107 |
Q |
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| T |
5217267 |
tggacaccaaagacgtttttcaacagaaatgttagtgttatgacgtaatatattatgggtttttctatcataaaaaaaaaaaaagttgctaaagaagtta |
5217366 |
T |
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| Q |
108 |
gtaaccataagttactagtaaccaaagcattttgacttttcttatgaaaaagagtaacatttatttaattataatgagaattgtattgaatgttgccgac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
5217367 |
gtaaccataagttactagtaaccaaagcattttgacttttcttatgaaaaagagtaacatttatttaattataatgagaatggtcttgaatgttgccgac |
5217466 |
T |
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| Q |
208 |
aatatatacaggttgatagtgcaaacaagtatgggatattatt |
250 |
Q |
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| T |
5217467 |
aatatatacaggttgatagtgcaaacaagtatgggatattatt |
5217509 |
T |
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