View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6781_low_22 (Length: 250)

Name: NF6781_low_22
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6781_low_22
NF6781_low_22
[»] chr1 (15 HSPs)
chr1 (19-249)||(11867766-11867996)
chr1 (145-203)||(11624066-11624124)
chr1 (147-209)||(31492929-31492991)
chr1 (147-209)||(48872213-48872275)
chr1 (150-196)||(9554106-9554152)
chr1 (146-209)||(38598297-38598360)
chr1 (147-209)||(29523550-29523612)
chr1 (145-209)||(11700447-11700512)
chr1 (145-190)||(40406271-40406316)
chr1 (116-156)||(44920322-44920362)
chr1 (162-197)||(52268106-52268141)
chr1 (173-203)||(10895371-10895401)
chr1 (145-179)||(27585246-27585280)
chr1 (121-209)||(34046410-34046494)
chr1 (123-160)||(10040504-10040541)
[»] chr6 (6 HSPs)
chr6 (146-209)||(2086863-2086926)
chr6 (121-199)||(5924790-5924866)
chr6 (119-209)||(34556197-34556287)
chr6 (146-187)||(2976127-2976168)
chr6 (109-159)||(32147832-32147882)
chr6 (167-209)||(34185039-34185081)
[»] chr7 (11 HSPs)
chr7 (122-209)||(17302942-17303029)
chr7 (151-209)||(32724485-32724543)
chr7 (161-209)||(38974038-38974086)
chr7 (146-209)||(36821779-36821842)
chr7 (148-209)||(17003441-17003502)
chr7 (146-199)||(32316077-32316130)
chr7 (153-209)||(34534785-34534841)
chr7 (143-209)||(21513074-21513140)
chr7 (122-160)||(31191475-31191513)
chr7 (162-198)||(16180460-16180496)
chr7 (168-208)||(24139855-24139895)
[»] chr4 (9 HSPs)
chr4 (121-209)||(51291137-51291225)
chr4 (149-203)||(949875-949929)
chr4 (146-198)||(20493352-20493404)
chr4 (146-198)||(20580066-20580118)
chr4 (147-199)||(49236740-49236792)
chr4 (151-194)||(8607613-8607656)
chr4 (148-198)||(13404225-13404275)
chr4 (122-159)||(52270568-52270605)
chr4 (143-203)||(41981032-41981092)
[»] chr3 (11 HSPs)
chr3 (121-209)||(17517605-17517693)
chr3 (116-203)||(25298999-25299086)
chr3 (122-198)||(22288442-22288518)
chr3 (147-203)||(53766686-53766742)
chr3 (164-209)||(50941730-50941775)
chr3 (147-199)||(26886049-26886101)
chr3 (151-203)||(42676681-42676733)
chr3 (145-198)||(35524281-35524334)
chr3 (151-203)||(39806818-39806868)
chr3 (146-198)||(22288752-22288804)
chr3 (164-209)||(7590740-7590785)
[»] chr8 (11 HSPs)
chr8 (122-209)||(8785252-8785338)
chr8 (146-209)||(28459984-28460047)
chr8 (148-209)||(18808760-18808821)
chr8 (147-209)||(11778507-11778569)
chr8 (146-203)||(41207781-41207838)
chr8 (170-203)||(35139039-35139072)
chr8 (109-160)||(42149895-42149944)
chr8 (144-199)||(36782753-36782808)
chr8 (151-209)||(38167496-38167554)
chr8 (122-159)||(13018592-13018629)
chr8 (166-203)||(18181238-18181275)
[»] scaffold0062 (1 HSPs)
scaffold0062 (146-201)||(3046-3101)
[»] scaffold0036 (1 HSPs)
scaffold0036 (144-198)||(88299-88353)
[»] chr5 (7 HSPs)
chr5 (151-209)||(17977704-17977762)
chr5 (147-209)||(2112595-2112657)
chr5 (162-209)||(31537748-31537795)
chr5 (146-195)||(5394021-5394070)
chr5 (168-203)||(8961371-8961406)
chr5 (146-209)||(20041608-20041671)
chr5 (125-161)||(30104778-30104814)
[»] chr2 (3 HSPs)
chr2 (143-209)||(26809051-26809117)
chr2 (108-156)||(43745738-43745786)
chr2 (112-203)||(37082155-37082250)
[»] scaffold0027 (1 HSPs)
scaffold0027 (114-209)||(13297-13390)
[»] scaffold0009 (1 HSPs)
scaffold0009 (162-198)||(168766-168802)
[»] scaffold0262 (1 HSPs)
scaffold0262 (147-203)||(17597-17653)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 11867996 - 11867766
Alignment:
Q  19 taaataaacatttttataataataattaacttgaaatcatcattttctgtcnnnnnnngattcaaggaaccatttaagaaatcaactttaatttatttat 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||| |||||||||||||| ||    
T  11867996 taaataaacatttttataataataattaacttggaatcatcattttctgtcaaaaaaagattcaaggaaccatttaagaaatgaactttaatttattaat 11867897  T
Q  119 gagaaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaataatttcttc 218  Q
    |||||||| |||| |||| ||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11867896 gagaaatgctaacgagtgtccctaggatactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaataatttcttt 11867797  T
Q  219 gttaacaagaccctttatttataactccaaa 249  Q
    |||||||||||||||||||||||||||||||    
T  11867796 gttaacaagaccctttatttataactccaaa 11867766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 11624066 - 11624124
Alignment:
Q  145 gcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    |||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||    
T  11624066 gcactctttaagcaccaaaagtggtaagattttatgaaagtttgtgcatttattgcatt 11624124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 31492929 - 31492991
Alignment:
Q  147 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||||||||| ||| | |||| ||||||||||||||||||||||||||| |||||||||    
T  31492929 actctttaagcatcaaaaatagtaaaattttatgaaagtttgtgcatttattgtattagaaat 31492991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 48872275 - 48872213
Alignment:
Q  147 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||||||||| |||||||||| ||||||||||||||| |||||||||| |||| |||||    
T  48872275 actctttaagcatcaaaagtggtaagattttatgaaagtttatgcatttattacattggaaat 48872213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 9554152 - 9554106
Alignment:
Q  150 ctttaagcatccaaagtggtaatattttatgaaagtttgtgcattta 196  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  9554152 ctttaagcacccaaagtagtaatattttatgaaagtttgtgcattta 9554106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 38598297 - 38598360
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||||||  ||||| |||||||| ||| ||| ||||||||||||||||||| |||||    
T  38598297 cactctttaagcatttaaagtcgtaatattgtattaaattttgtgcatttattgcattggaaat 38598360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 29523550 - 29523612
Alignment:
Q  147 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||||  || |||||||| ||| |||||||||||||| |||||||||||| |||||    
T  29523550 actctttaagcacacagagtggtaagattgtatgaaagtttgtgtatttattgcattggaaat 29523612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 11700512 - 11700447
Alignment:
Q  145 gcactctttaagcatccaaagtggtaatatttt-atgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||||||||| | ||||| ||||  |||| |||||||||||||||||||||||||| |||||    
T  11700512 gcactctttaagcacctaaagtagtaaagtttttatgaaagtttgtgcatttattgcattggaaat 11700447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 40406316 - 40406271
Alignment:
Q  145 gcactctttaagcatccaaagtggtaatattttatgaaagtttgtg 190  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||||    
T  40406316 gcactctttaagcattcaaaatggtaagattttatgaaagtttgtg 40406271  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 44920362 - 44920322
Alignment:
Q  116 tatgagaaatgttaacaagtgccctaagggcactctttaag 156  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  44920362 tatgagaaatgttaacgagtgccctaagggcactttttaag 44920322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 52268106 - 52268141
Alignment:
Q  162 aaagtggtaatattttatgaaagtttgtgcatttat 197  Q
    ||||| ||||||||||||||||||||||||||||||    
T  52268106 aaagtagtaatattttatgaaagtttgtgcatttat 52268141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 10895401 - 10895371
Alignment:
Q  173 attttatgaaagtttgtgcatttattgcatt 203  Q
    |||||||||||||||||||||||||||||||    
T  10895401 attttatgaaagtttgtgcatttattgcatt 10895371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 27585246 - 27585280
Alignment:
Q  145 gcactctttaagcatccaaagtggtaatattttat 179  Q
    ||||||||||||||||||||||||||| |||||||    
T  27585246 gcactctttaagcatccaaagtggtaagattttat 27585280  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 34046494 - 34046410
Alignment:
Q  121 gaaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||| |||||||   || |||||||||||||  |||| |||| ||  |||||||||||||||||||||||||| || |||||    
T  34046494 gaaatgttaacgagtgcccc--ggacactctttaagcactcaaaatggtgat--tttatgaaagtttgtgcatttattgctttggaaat 34046410  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 10040541 - 10040504
Alignment:
Q  123 aatgttaacaagtgccctaagggcactctttaagcatc 160  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  10040541 aatgttaacaagtgccctaagggcattgtttaagcatc 10040504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 2086926 - 2086863
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2086926 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcaattattgcattagaaat 2086863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 5924866 - 5924790
Alignment:
Q  121 gaaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattg 199  Q
    |||| ||||||||||||||   | |||||||||||||| | |||||||||| ||||||||||||||||||||| |||||    
T  5924866 gaaaggttaacaagtgcccg--gtgcactctttaagcaccaaaagtggtaaaattttatgaaagtttgtgcatatattg 5924790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 34556287 - 34556197
Alignment:
Q  119 gagaaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatatttt-atgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||| | ||||||||| || ||||||||||||| ||||  |||||| ||||| |||||||||||| ||||||||| ||| |||||    
T  34556287 gagaaatgttagcgagtgcccta-ggacactctttaagcacccaagatggtaaaatttttatgaaagtttgtacatttattgtattggaaat 34556197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 2976127 - 2976168
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagttt 187  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  2976127 cactctttaagcacccaaagtggtaatattttataaaagttt 2976168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 32147832 - 32147882
Alignment:
Q  109 atttatttatgagaaatgttaacaagtgccctaagggcactctttaagcat 159  Q
    |||||||||||| ||||||||| |||||| ||||||||| | |||||||||    
T  32147832 atttatttatgaaaaatgttaagaagtgcactaagggcattgtttaagcat 32147882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 34185039 - 34185081
Alignment:
Q  167 ggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||| |||| |||||||||||||||||||||||||| |||||    
T  34185039 ggtaagatttaatgaaagtttgtgcatttattgcattggaaat 34185081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 17303029 - 17302942
Alignment:
Q  122 aaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||||| |||||||  ||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||| |||||    
T  17303029 aaatgttaacgagtgcccccagggcactctttaagcacctaaagtggtaatattctgtgaaagtttgtgcatttattgcattggaaat 17302942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 32724543 - 32724485
Alignment:
Q  151 tttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||||| ||||| |||| |||||||||||||||||| |||||||| |||||||||    
T  32724543 tttaagcatcaaaagtagtaagattttatgaaagtttgtgtatttattgaattagaaat 32724485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 38974038 - 38974086
Alignment:
Q  161 caaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||    
T  38974038 caaagtggtaagcttttatgaaagtttgtgcatttattgcattggaaat 38974086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 36821779 - 36821842
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||| |||||||| | |||||||||| |||||||||||||||| | |||||||| |||||||||    
T  36821779 cactttttaagcaccaaaagtggtaacattttatgaaagtttgcgtatttattgtattagaaat 36821842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 17003502 - 17003441
Alignment:
Q  148 ctctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||| || | ||||| || | ||||||||||||||||||||||||||||||| |||||    
T  17003502 ctctttaaacacctaaagtagtcagattttatgaaagtttgtgcatttattgcattggaaat 17003441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 32316077 - 32316130
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattg 199  Q
    |||| |||||||||| |||||| ||| |||||||||||||||||| ||||||||    
T  32316077 cactttttaagcatcgaaagtgataacattttatgaaagtttgtgtatttattg 32316130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 34534785 - 34534841
Alignment:
Q  153 taagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||| ||||| || ||| ||||||| ||||||||||||||||||||||| |||||    
T  34534785 taagcacccaaaatgataaaattttataaaagtttgtgcatttattgcattggaaat 34534841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 21513140 - 21513074
Alignment:
Q  143 gggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||||| |||| |||   |||| |||||||| ||||||||||||||| |||||| |||||    
T  21513140 gggcactctttaaacatcaaaaaatgtaaaattttatggaagtttgtgcatttactgcattggaaat 21513074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 31191513 - 31191475
Alignment:
Q  122 aaatgttaacaagtgccctaagggcactctttaagcatc 160  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  31191513 aaatgttaacaagtgccctaagggcattgtttaagcatc 31191475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 16180496 - 16180460
Alignment:
Q  162 aaagtggtaatattttatgaaagtttgtgcatttatt 198  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  16180496 aaagtgataagattttatgaaagtttgtgcatttatt 16180460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 24139855 - 24139895
Alignment:
Q  168 gtaatattttatgaaagtttgtgcatttattgcattagaaa 208  Q
    |||| ||||||||| |||||||| |||||||||||||||||    
T  24139855 gtaagattttatgagagtttgtggatttattgcattagaaa 24139895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 51291225 - 51291137
Alignment:
Q  121 gaaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||| |||||||   |||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  51291225 gaaatgttaacgagtgccccgggggcactctttaagcacctaaaatggtaagattttatgaaagtttgtgcatttattgcattggaaat 51291137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 949875 - 949929
Alignment:
Q  149 tctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  949875 tctttaagcatccaaaatggtaaggttttatgaaagtttgtgcatttattgcatt 949929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 20493404 - 20493352
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttatt 198  Q
    ||||||||||||| ||||||||||||  ||||||| |||||||||||||||||    
T  20493404 cactctttaagcacccaaagtggtaagcttttatgtaagtttgtgcatttatt 20493352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 20580066 - 20580118
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttatt 198  Q
    ||||||||||||||||||| | |||||||||||||||||||| || |||||||    
T  20580066 cactctttaagcatccaaaatagtaatattttatgaaagtttatgtatttatt 20580118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 49236792 - 49236740
Alignment:
Q  147 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattg 199  Q
    |||||||||||||| |||||| ||||||||||| ||| |||||| ||||||||    
T  49236792 actctttaagcatctaaagtgataatattttataaaaatttgtgtatttattg 49236740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 8607613 - 8607656
Alignment:
Q  151 tttaagcatccaaagtggtaatattttatgaaagtttgtgcatt 194  Q
    |||||||| | |||||||||| ||||||||||||||||||||||    
T  8607613 tttaagcaccaaaagtggtaagattttatgaaagtttgtgcatt 8607656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 13404275 - 13404225
Alignment:
Q  148 ctctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttatt 198  Q
    ||||||||||| | |||||||||| ||||||||||||||| || |||||||    
T  13404275 ctctttaagcacctaaagtggtaagattttatgaaagtttatgtatttatt 13404225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 52270605 - 52270568
Alignment:
Q  122 aaatgttaacaagtgccctaagggcactctttaagcat 159  Q
    |||||||||||||||||||||||||| | |||||||||    
T  52270605 aaatgttaacaagtgccctaagggcattgtttaagcat 52270568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 41981032 - 41981092
Alignment:
Q  143 gggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    |||||||||||||||| |||||||| |||  |||||||| ||||| |  ||||||||||||    
T  41981032 gggcactctttaagcacccaaagtgctaagtttttatgagagtttatatatttattgcatt 41981092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 17517693 - 17517605
Alignment:
Q  121 gaaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||| ||||||    |||||||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  17517693 gaaatgttaacgagtgcctccggggcactcattaagcacccaaagtggtaagattgtatgaaagtttgtgcatttattgcattggaaat 17517605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 25298999 - 25299086
Alignment:
Q  116 tatgagaaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    |||| ||||||||||||||||||||  | ||||||||||| || | |||||  ||| |||||||||||||||||||||||||||||||    
T  25298999 tatgggaaatgttaacaagtgcccttggagcactctttaaacacctaaagtaataagattttatgaaagtttgtgcatttattgcatt 25299086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 22288442 - 22288518
Alignment:
Q  122 aaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttatt 198  Q
    |||||||||  |||||||   |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  22288442 aaatgttaatgagtgcccctggggcactctttaagtatccaaaatggtaagattttatgaaagtttgtgcatttatt 22288518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 53766686 - 53766742
Alignment:
Q  147 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  53766686 actctttaagcatctaaaatggtaatattttatgaaagtttgtgtatttattgcatt 53766742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 50941775 - 50941730
Alignment:
Q  164 agtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||    
T  50941775 agtggtaagattttatgaaagtttgtgcatttattgcattggaaat 50941730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 26886049 - 26886101
Alignment:
Q  147 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattg 199  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||| ||||    
T  26886049 actctttaaacatccaaagtggtaagtttttatgaaagtttgtgcattcattg 26886101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 42676681 - 42676733
Alignment:
Q  151 tttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||||| ||||    
T  42676681 tttaagcatcaaaagtggtaagtttttatgaaagtttgtgcatttattacatt 42676733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 35524281 - 35524334
Alignment:
Q  145 gcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttatt 198  Q
    |||||||||||||||  |||||||||| ||||||| ||||||| ||||||||||    
T  35524281 gcactctttaagcatttaaagtggtaaaattttataaaagtttatgcatttatt 35524334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 39806868 - 39806818
Alignment:
Q  151 tttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||| ||||    
T  39806868 tttaagcatccaaagtggtaatattt--tgaaaatttgtgcatttattacatt 39806818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 22288752 - 22288804
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttatt 198  Q
    ||||||||||  ||||||| |||||| ||||||||||| ||||||||||||||    
T  22288752 cactctttaaatatccaaaatggtaagattttatgaaaatttgtgcatttatt 22288804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 7590785 - 7590740
Alignment:
Q  164 agtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||| |||||||||||||||||| |||||||| ||| |||||    
T  7590785 agtggtaagattttatgaaagtttgtgtatttattgtattggaaat 7590740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 8785252 - 8785338
Alignment:
Q  122 aaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||||| ||||| ||  |||||||||||||||| |||||||||||| ||||||||||| |||||| |||||||||||| |||||    
T  8785252 aaatgttaacgagtgctctc-gggcactctttaagcacccaaagtggtaagattttatgaaattttgtgtatttattgcattggaaat 8785338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 28459984 - 28460047
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  28459984 cactctttaagcatcaaaagtggtaagattttattaaagtttgtgcatttattgcattggaaat 28460047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 18808760 - 18808821
Alignment:
Q  148 ctctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||| | ||| |||||| ||||||||||||||| |||||||||||||||||||||    
T  18808760 ctctttaagcacctaaaatggtaagattttatgaaagtttatgcatttattgcattagaaat 18808821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 11778569 - 11778507
Alignment:
Q  147 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||| || | |||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  11778569 actctttaaacacctaaagtggtaagattttataaaattttgtgcatttattgcattagaaat 11778507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 41207838 - 41207781
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    |||||||||| |||||||| | |||| |||||||||| ||||||||||||||||||||    
T  41207838 cactctttaaacatccaaaatagtaaaattttatgaatgtttgtgcatttattgcatt 41207781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 35139039 - 35139072
Alignment:
Q  170 aatattttatgaaagtttgtgcatttattgcatt 203  Q
    ||||||||||||||||||||||||||||||||||    
T  35139039 aatattttatgaaagtttgtgcatttattgcatt 35139072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 42149895 - 42149944
Alignment:
Q  109 atttatttatgagaaatgttaacaagtgccctaagggcactctttaagcatc 160  Q
    ||||||||||||||||||||||| |||||||  ||| |||||||||||||||    
T  42149895 atttatttatgagaaatgttaacgagtgccc--aggacactctttaagcatc 42149944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 36782753 - 36782808
Alignment:
Q  144 ggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattg 199  Q
    |||||||||||| |||  |||||  || ||||||||||||||||||||||||||||    
T  36782753 ggcactctttaaacattaaaagttatactattttatgaaagtttgtgcatttattg 36782808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 38167554 - 38167496
Alignment:
Q  151 tttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||||  ||||||||||  |||||||||||| ||||||||||||| ||| |||||    
T  38167554 tttaagcatataaagtggtaagcttttatgaaagtctgtgcatttattgtattggaaat 38167496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 13018629 - 13018592
Alignment:
Q  122 aaatgttaacaagtgccctaagggcactctttaagcat 159  Q
    |||||||||||||||||||||||||| | |||||||||    
T  13018629 aaatgttaacaagtgccctaagggcattgtttaagcat 13018592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 18181238 - 18181275
Alignment:
Q  166 tggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  18181238 tggtaatcttttatgaaagtttgtgtatttattgcatt 18181275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 3101 - 3046
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgca 201  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||    
T  3101 cactctttaagcacccaaagtagtaagattttatgaaagtttgtgcatttattgca 3046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 88353 - 88299
Alignment:
Q  144 ggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttatt 198  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||||||    
T  88353 ggcactctttaagtaccaaaagtggtaatattttatgaaagtttgtgcatttatt 88299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 17977704 - 17977762
Alignment:
Q  151 tttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||    
T  17977704 tttaagcatccaaagtggtaagattttctgaaagtttatgcatttattgcattggaaat 17977762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 2112657 - 2112595
Alignment:
Q  147 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||||||||| ||||| |||| ||||||| ||| ||||||||||||||||||| |||||    
T  2112657 actctttaagcatctaaagtagtaagattttataaaattttgtgcatttattgcattggaaat 2112595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 31537795 - 31537748
Alignment:
Q  162 aaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  31537795 aaagtgataaaattttatgaaagtttgtgcatatattgcattagaaat 31537748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 5394070 - 5394021
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcattt 195  Q
    ||||||||||||||| || || |||| |||||||||||||||||||||||    
T  5394070 cactctttaagcatctaaggtagtaagattttatgaaagtttgtgcattt 5394021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 8961406 - 8961371
Alignment:
Q  168 gtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8961406 gtaatattttatgaaagtttgtgtatttattgcatt 8961371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 20041608 - 20041671
Alignment:
Q  146 cactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||||||||||| ||| || ||| |||||| |||| ||| ||||||||||||||| |||||    
T  20041608 cactctttaagcatctaaaatgataaaattttacgaaaatttatgcatttattgcattggaaat 20041671  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 30104778 - 30104814
Alignment:
Q  125 tgttaacaagtgccctaagggcactctttaagcatcc 161  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30104778 tgttaacaagtgccctcggggcactctttaagcatcc 30104814  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 26809117 - 26809051
Alignment:
Q  143 gggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    |||||||||||||||| ||||||||||||  |||  ||||||||| ||||||||||||||| |||||    
T  26809117 gggcactctttaagcacccaaagtggtaagctttattgaaagtttatgcatttattgcattggaaat 26809051  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 43745786 - 43745738
Alignment:
Q  108 aatttatttatgagaaatgttaacaagtgccctaagggcactctttaag 156  Q
    |||||||| | | ||||||||||| ||||||||||||||||||||||||    
T  43745786 aatttattcaagggaaatgttaacgagtgccctaagggcactctttaag 43745738  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 37082155 - 37082250
Alignment:
Q  112 tatttatgagaaatgttaacaagtgccctaagggcactct----ttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    |||||||||||||||||||| ||||| |    ||||||||    ||||||| ||||| ||||||  |||||||||| |||||||||||||| ||||    
T  37082155 tatttatgagaaatgttaacgagtgctcccgaggcactctttaattaagcacccaaaatggtaagcttttatgaaaatttgtgcatttattacatt 37082250  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 13297 - 13390
Alignment:
Q  114 tttatgagaaatgttaacaagtgccctaagggcactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 209  Q
    ||||||| |||||||||| | ||||| |  | ||||||||||||| ||||| || ||| |||||||||||||||||| | |||||||||| |||||    
T  13297 tttatgaaaaatgttaacgaatgcccga--gacactctttaagcacccaaaatgttaaaattttatgaaagtttgtgtaattattgcattggaaat 13390  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 168766 - 168802
Alignment:
Q  162 aaagtggtaatattttatgaaagtttgtgcatttatt 198  Q
    |||||||||| ||||||||||||||||||||||||||    
T  168766 aaagtggtaagattttatgaaagtttgtgcatttatt 168802  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 17653 - 17597
Alignment:
Q  147 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 203  Q
    ||||||||| |||| ||||| |||| ||||||||||| ||||| |||||||| ||||    
T  17653 actctttaaacatcaaaagtagtaagattttatgaaattttgtacatttattacatt 17597  T

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