View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_low_25 (Length: 241)
Name: NF6781_low_25
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 45864180 - 45864395
Alignment:
| Q |
19 |
aaaatagccagtggaaacacaaaaacgattgtccaataacaaatagtaagttacagtaccctgaaataaaattgatggtaataagaagcaatctggcagg |
118 |
Q |
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| T |
45864180 |
aaaatagccagtggaaacacaaaaacgattgtccaataacaaatagtaagttacagtaccctgaaataaaattgatggtaataagaagcaatctggcagg |
45864279 |
T |
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| Q |
119 |
caggtatgtaatgtgaaaatgaatggaacaaacctcattttgcaccctgttgctaagggactcaatcaattgattcttgtcaaatcccctattaaccacc |
218 |
Q |
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| T |
45864280 |
caggtatgtaatgtgaaaatgaatggaacaaacctcattttgcaccctgttgctaagggactcaatcaattgattcttgtcaaatcccctattaaccacc |
45864379 |
T |
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| Q |
219 |
tcctgaaggatgtcca |
234 |
Q |
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|||||||| ||||||| |
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| T |
45864380 |
tcctgaagaatgtcca |
45864395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 17406286 - 17406084
Alignment:
| Q |
22 |
atagccagtggaaacacaaaaacgattgtccaataacaaatagtaagttacagtaccctgaaataaaattgatggtaataagaagcaatctggcaggcag |
121 |
Q |
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| T |
17406286 |
atagccggtggaaacacgataacgattgtccaacaacaaatagtaagttacagtaccctgaaat-aaattgatagtaataagaagcaatctggaaggcag |
17406188 |
T |
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| Q |
122 |
gtatgtaatgtgaaaatgaatggaacaaacctcattttgcaccctgttgctaagggactcaatcaattgattcttgtcaaatcccctattaaccacctcc |
221 |
Q |
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| T |
17406187 |
gtaag-caggtcaaaatgaatggcacaaacctcgttttgtatcctattcttaagggactcaaccaatggttccctttcaaatcccctattaaccacctcc |
17406089 |
T |
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| Q |
222 |
tgaag |
226 |
Q |
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||||| |
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| T |
17406088 |
tgaag |
17406084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 4051389 - 4051602
Alignment:
| Q |
22 |
atagccagtggaaacacaaaaacgattgtccaataacaaatagtaagttacagtaccctgaaataaaattgat---ggtaataagaagcaatctggcagg |
118 |
Q |
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|||||||||||| |||| | |||| ||||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||| ||||| |
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| T |
4051389 |
atagccagtggagacacgataacggttgtccaataacaaatagtaagtcacggtaccctgaaat-aaattgatgcaggtaataagaagcaatctagcagg |
4051487 |
T |
|
| Q |
119 |
caggtatgta-------atgtgaaaatgaatggaacaaacctcattttgcaccctgttgctaagggactcaatcaattgattcttgtcaaatcccctatt |
211 |
Q |
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|||||| ||| |||||||||||||| | ||||||||||||||| |||||||| ||||||| |||| |||| | | | | ||||||||||||| |
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| T |
4051488 |
caggtaagtatgtgtctatgtgaaaatgaattggacaaacctcattttgtaccctgttcttaagggagtcaaccaatggttccctagcaaatcccctatt |
4051587 |
T |
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| Q |
212 |
aaccacctcctgaag |
226 |
Q |
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||||||||||||||| |
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| T |
4051588 |
aaccacctcctgaag |
4051602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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