View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6781_low_26 (Length: 240)

Name: NF6781_low_26
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6781_low_26
NF6781_low_26
[»] chr1 (1 HSPs)
chr1 (1-231)||(47798650-47798880)
[»] chr4 (1 HSPs)
chr4 (122-231)||(39777384-39777493)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 47798880 - 47798650
Alignment:
Q  1 ttgactccacatataggttttattcttaattttatctagaatagtaattggacttagattaagaagcaagatataggtgatacatgtatagtactaaaag 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47798880 ttgactccacatataggttttattctttattttatctagaatagtaattggacttagattaagaagcaagatataggtgatatatgtatagtactaaaag 47798781  T
Q  101 ttgttaatttggaaatcaaaattattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47798780 ttgttaatttggaaatcaaaattattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctca 47798681  T
Q  201 tttcagaatctagtaatgctgttgctgatgt 231  Q
    |||||||||||||||||||||||||||||||    
T  47798680 tttcagaatctagtaatgctgttgctgatgt 47798650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 39777384 - 39777493
Alignment:
Q  122 ttattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctg 221  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  39777384 ttattgaattatttttcataactctaacgtaatttgcagtttccattaatttcaaaaagtggatacataaggaagctcatttcagaatctagtgatgctg 39777483  T
Q  222 ttgctgatgt 231  Q
    ||| ||||||    
T  39777484 ttgatgatgt 39777493  T

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