View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6781_low_27 (Length: 229)

Name: NF6781_low_27
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6781_low_27
NF6781_low_27
[»] chr1 (2 HSPs)
chr1 (7-229)||(7773786-7774008)
chr1 (7-222)||(7770879-7771092)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 7774008 - 7773786
Alignment:
Q  7 gtaaccttgttcttgaaaaatgtgcttgtaatgtacgaactaaaatgacactcatttgggattgggtacgcaatattggttatatatggaccaaacaaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7774008 gtaaccttgttcttgaaaaatgtgcttgtaatgtacgaactaaaatgacactcatttgggaatgggtacgcaatattggttatatatggaccaaacaaac 7773909  T
Q  107 cttcagcggggatgagtctttagtttatgacagattagaaattatgaatgttcaatgaatcaaaaggttgcataccgtaacttgtaatttagtattgcaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7773908 cttcagcggggatgagtctttagtttatgacagattagaaattatgaatgttcaatgaatcaaaaggttgcataccttaacttgtaatttagtattgcaa 7773809  T
Q  207 gcaagtagaaatattatgcatgc 229  Q
    |||||||||||||||||||||||    
T  7773808 gcaagtagaaatattatgcatgc 7773786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 7771092 - 7770879
Alignment:
Q  7 gtaaccttgttcttgaaaaa-tgtgcttgtaatgtacgaactaaaatgacactcatttgggattgggtacgcaatattggtt---atatatggaccaaac 102  Q
    |||||||||| ||||||||| |||| |||| ||||| |||||||||||||||||||||||||||||      |||| ||| |   | |||||||||||||    
T  7771092 gtaaccttgtccttgaaaaaatgtgtttgtcatgtatgaactaaaatgacactcatttgggattgg------aatagtggctggcagatatggaccaaac 7770999  T
Q  103 aaaccttcagcggggatgagtctttagtttatgacagattagaaattatgaatgttcaatgaatcaaaaggttgcataccgtaacttgtaatttagtatt 202  Q
    |||| ||||  ||||||||||||| |||||| |||||||||| |||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||    
T  7770998 aaactttcatgggggatgagtcttcagtttacgacagattaggaattatgagtgttaaatgaaccaaaaggttgcataccttaacttgtaatgtattatt 7770899  T
Q  203 gcaagcaagtagaaatatta 222  Q
    || |||||||||||||||||    
T  7770898 gcgagcaagtagaaatatta 7770879  T

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