View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_low_4 (Length: 489)
Name: NF6781_low_4
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 5217086 - 5216633
Alignment:
| Q |
18 |
tgttccgtaggtttctgtacttcatatgtcttccaatttctaaactggtgtgtccttttttggtacattttatgaataaaccgactctaatatgataaca |
117 |
Q |
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| T |
5217086 |
tgttccgtaggtttctgtacttcatatgccttccaatttctaaactggtgtgtccttttttggtacattttatgaataaaccgactctaatttgataaca |
5216987 |
T |
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| Q |
118 |
ggatgacgtcattttcagagaatacctaccaaattaaatgtctagatacataagaggcatgatttattttgaagtttgcaaggtcactacaaaacaagac |
217 |
Q |
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| T |
5216986 |
ggatgacgtcattttcagagaatacctaccaaattaaatgtctatatacataagaggcatgatttattttgaactttgcaaggtcactacaaaacaagac |
5216887 |
T |
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| Q |
218 |
ataaggaattaaataaattagagaattgtatcgaaccttcacaacagtgcagtctttacaagtattattatctatacaaaccctgccaattaacagaaaa |
317 |
Q |
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| T |
5216886 |
ataaggaattaaataaattagagaattgtatcgaaccttcacaacagtgcagtctttacaagtattattatctatacaaaccctgccaattaacagaaaa |
5216787 |
T |
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| Q |
318 |
ttaattacgtactcataaagtaatctacataattaattaactaatcggaatataattaatcgcataaaacaaagtgttacctggctggatgtaatctttc |
417 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5216786 |
ttaattacgtactcataaagtaatcaacataattaattaactaatcggaatataattaatcacataaaacaaagtgttacctggctggatgtaatctttc |
5216687 |
T |
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| Q |
418 |
agtaagcgtttcaatctctctatcaacacgagaatgaaaaactgtgtccattct |
471 |
Q |
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| T |
5216686 |
agtaagcgtttcaatctctctatcaacacgagaatgaaaaactgtgtccattct |
5216633 |
T |
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