View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6781_low_7 (Length: 433)

Name: NF6781_low_7
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6781_low_7
NF6781_low_7
[»] chr6 (20 HSPs)
chr6 (18-425)||(28327035-28327440)
chr6 (18-425)||(28504671-28505076)
chr6 (217-420)||(28186962-28187164)
chr6 (253-423)||(28296196-28296363)
chr6 (253-423)||(28515710-28515877)
chr6 (217-412)||(28244365-28244557)
chr6 (18-106)||(28236330-28236418)
chr6 (18-101)||(28244707-28244790)
chr6 (302-423)||(29827545-29827666)
chr6 (322-428)||(2186368-2186474)
chr6 (19-101)||(28296010-28296092)
chr6 (19-101)||(28515981-28516063)
chr6 (302-423)||(28096954-28097075)
chr6 (18-102)||(28187226-28187310)
chr6 (302-423)||(28141094-28141215)
chr6 (306-423)||(28150731-28150848)
chr6 (336-423)||(26850280-26850367)
chr6 (296-357)||(28235815-28235876)
chr6 (302-423)||(29469762-29469883)
chr6 (334-419)||(29842526-29842611)
[»] scaffold0019 (2 HSPs)
scaffold0019 (259-420)||(56753-56914)
scaffold0019 (18-123)||(56572-56676)
[»] scaffold0038 (4 HSPs)
scaffold0038 (217-412)||(44527-44719)
scaffold0038 (18-106)||(36492-36580)
scaffold0038 (18-101)||(44869-44952)
scaffold0038 (296-357)||(35977-36038)
[»] chr1 (2 HSPs)
chr1 (302-422)||(26137439-26137559)
chr1 (302-423)||(5921980-5922101)
[»] chr8 (1 HSPs)
chr8 (305-419)||(35984859-35984973)
[»] chr5 (1 HSPs)
chr5 (302-412)||(16692428-16692538)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 4e-79; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 28327440 - 28327035
Alignment:
Q  18 ttcatctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaacggatgaaaaa---- 113  Q
    |||||||||||||||||| ||| ||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||        
T  28327440 ttcatctcccttccaatctaccaccttttgctcagatgacgggaattccaaatatataatttcaattttacttgatcccttaaagcgcaagaaaaaaaaa 28327341  T
Q  114 cacaaatcaaccgaaatacatac---atgtatatatgttacgaattaaacacatttatttatagaaatttacatattataacagaataaaaaagtgtagc 210  Q
    ||||||||||||   || ||||    |||| |||||||||| |||| |||||| | ||| | | |||||||||||||||||  |||||||||||||||||    
T  28327340 cacaaatcaaccatgattcataatatatgtgtatatgttacaaattgaacacactaattaagataaatttacatattataagggaataaaaaagtgtagc 28327241  T
Q  211 ataaacattaataggattagtaaaaaataaggaaagttaaggttaaacataacaaatgaaccattcatgaatatcagtattatctaccttgttttcttct 310  Q
    |||||||||||||||||||||||||||  || ||| | |||       ||||||| | ||||||||||||||||||||||  || |||||  ||||||||    
T  28327240 ataaacattaataggattagtaaaaaaagagcaaactgaag-------ataacaa-taaaccattcatgaatatcagtatattc-accttactttcttct 28327150  T
Q  311 aagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattttctctatca 410  Q
    ||||| ||||||||||||||||| ||||||||||||||||   |||||||||||||| |||||||| | || |||||||| ||||| |||| ||| || |    
T  28327149 aagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctatttgctccatta 28327050  T
Q  411 aggcatgtaatgtaa 425  Q
    |||||||||||||||    
T  28327049 aggcatgtaatgtaa 28327035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 28505076 - 28504671
Alignment:
Q  18 ttcatctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaacggatgaaaaa---- 113  Q
    |||||||||||||||||| ||| ||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||        
T  28505076 ttcatctcccttccaatctaccaccttttgctcagatgacgggaattccaaatatataatttcaattttacttgatcccttaaagcgcaagaaaaaaaaa 28504977  T
Q  114 cacaaatcaaccgaaatacatac---atgtatatatgttacgaattaaacacatttatttatagaaatttacatattataacagaataaaaaagtgtagc 210  Q
    ||||||||||||   || ||||    |||| |||||||||| |||| |||||| | ||| | | |||||||||||||||||  |||||||||||||||||    
T  28504976 cacaaatcaaccatgattcataatatatgtgtatatgttacaaattgaacacactaattaagataaatttacatattataagggaataaaaaagtgtagc 28504877  T
Q  211 ataaacattaataggattagtaaaaaataaggaaagttaaggttaaacataacaaatgaaccattcatgaatatcagtattatctaccttgttttcttct 310  Q
    |||||||||||||||||||||||||||  || ||| | |||       ||||||| | ||||||||||||||||||||||  || |||||  ||||||||    
T  28504876 ataaacattaataggattagtaaaaaaagagcaaactgaag-------ataacaa-taaaccattcatgaatatcagtatattc-accttactttcttct 28504786  T
Q  311 aagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattttctctatca 410  Q
    ||||| ||||||||||||||||| ||||||||||||||||   |||||||||||||| |||||||| | || |||||||| ||||| |||| ||| || |    
T  28504785 aagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctatttgctccatta 28504686  T
Q  411 aggcatgtaatgtaa 425  Q
    |||||||||||||||    
T  28504685 aggcatgtaatgtaa 28504671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 217 - 420
Target Start/End: Complemental strand, 28187164 - 28186962
Alignment:
Q  217 attaataggattagtaaaaaataaggaaagttaaggttaaacataacaaatgaaccattcatgaatatcagtattatctaccttgttttcttctaagacg 316  Q
    ||||||||||| ||||||||| ||  ||||| ||| ||||| ||||||||   |||||||||| |||||||||||||  ||||| ||| ||||||||||     
T  28187164 attaataggataagtaaaaaagaac-aaagtaaagattaaatataacaaaaagaccattcatggatatcagtattattcaccttatttgcttctaagaca 28187066  T
Q  317 tgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattttctctatcaaggcat 416  Q
    | |||||| |||||||||||||||||||||||||| |||||||| |||||||| || |||   ||||||||||| |||||||||||||||||||||||||    
T  28187065 tcaattatgtctttatggaaccacaacctactacgtcttccaggctcttttggagactctttccggacaatttctttacccattttctctatcaaggcat 28186966  T
Q  417 gtaa 420  Q
    ||||    
T  28186965 gtaa 28186962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 253 - 423
Target Start/End: Original strand, 28296196 - 28296363
Alignment:
Q  253 ttaaacataacaaatgaaccattcatgaatatcagtattatctaccttgttttcttctaagacgtgaattatatctttatggaaccacaacctactacgc 352  Q
    ||||| ||||||||  | ||||||||  |||||||||||    ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||     
T  28296196 ttaaagataacaaaaaacccattcatagatatcagtattc---accttattttcttctaagacatgaattatgtctttatggaaccacaacctactacgt 28296292  T
Q  353 cttccaggttcttttggggattctcgacggacaatttccttacccattttctctatcaaggcatgtaatgt 423  Q
    ||||| || |||||||| |||| |  | | |||||||| ||||||||||||||||||||||||||||||||    
T  28296293 cttcctggctcttttggagatttttcatgcacaatttctttacccattttctctatcaaggcatgtaatgt 28296363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 253 - 423
Target Start/End: Complemental strand, 28515877 - 28515710
Alignment:
Q  253 ttaaacataacaaatgaaccattcatgaatatcagtattatctaccttgttttcttctaagacgtgaattatatctttatggaaccacaacctactacgc 352  Q
    ||||| ||||||||  | ||||||||  |||||||||||    ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||     
T  28515877 ttaaagataacaaaaaacccattcatagatatcagtattc---accttattttcttctaagacatgaattatgtctttatggaaccacaacctactacgt 28515781  T
Q  353 cttccaggttcttttggggattctcgacggacaatttccttacccattttctctatcaaggcatgtaatgt 423  Q
    ||||| || |||||||| |||| |  | | |||||||| ||||||||||||||||||||||||||||||||    
T  28515780 cttcctggctcttttggagatttttcatgcacaatttctttacccattttctctatcaaggcatgtaatgt 28515710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 412
Target Start/End: Complemental strand, 28244557 - 28244365
Alignment:
Q  217 attaataggattagtaaaaaataaggaaagttaaggttaaacataacaaatgaa-ccattcatgaatatcagtattatctaccttgttttcttctaagac 315  Q
    |||||||||||| |||||||| ||  ||||  ||||||||| ||||||||  || ||||||||| |||||||||||    ||||  ||||||||||||||    
T  28244557 attaataggattggtaaaaaagaacaaaagg-aaggttaaagataacaaaaaaaaccattcatggatatcagtattc---acctgattttcttctaagac 28244462  T
Q  316 gtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattttctctatcaag 412  Q
     | ||||||||||||||||||||||||||| ||| | |||||||| || ||||| |||| |  |  ||||||||| |||||||||||||||||||||    
T  28244461 atcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttctttacccattttctctatcaag 28244365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 28236418 - 28236330
Alignment:
Q  18 ttcatctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaacgga 106  Q
    |||||||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  28236418 ttcatctcccttccaatctatcacctcttcctcagatgacgggaattccaaatatataatttcaatttcacttgatcccttaaagcgga 28236330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 28244790 - 28244707
Alignment:
Q  18 ttcatctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaa 101  Q
    ||||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  28244790 ttcatctccctcccaatctaccacctcttcctcagatgacgggaattccaaatatataatttcaatttcacttgatcccttaaa 28244707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 423
Target Start/End: Complemental strand, 29827666 - 29827545
Alignment:
Q  302 ttttcttctaagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattt 401  Q
    |||||||||||||| |||| |||||||| || ||||||||||||||||||| ||||||| ||||| || |||||| | || |||||||| |||||||| |    
T  29827666 ttttcttctaagacttgaactatatcttcatagaaccacaacctactacgctttccaggctctttcggtgattcttgtcgtacaatttctttacccatgt 29827567  T
Q  402 tctctatcaaggcatgtaatgt 423  Q
      ||||||||| ||||||||||    
T  29827566 cttctatcaagtcatgtaatgt 29827545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 2186474 - 2186368
Alignment:
Q  322 tatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattttctctatcaaggcatgtaat 421  Q
    |||||||| |||| ||||||||||||||||  ||||||| |||||||| |||||| | || || ||||| |||||||||| |||||||||| ||||||||    
T  2186474 tatatcttcatgggaccacaacctactacgttttccaggctcttttggtgattcttgtcgtacgatttctttacccatttcctctatcaagtcatgtaat 2186375  T
Q  422 gtaacac 428  Q
    || ||||    
T  2186374 gtcacac 2186368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 28296010 - 28296092
Alignment:
Q  19 tcatctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaa 101  Q
    |||||||||||||| || | | ||||||||||| || |||||||||||||||||||||||||||||| | |||||||||||||    
T  28296010 tcatctcccttccattctatcacctcttcctcagataacgggaattccaaatatataatttcaatttgacttgatcccttaaa 28296092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 28516063 - 28515981
Alignment:
Q  19 tcatctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaa 101  Q
    |||||||||||||| || | | ||||||||||| || |||||||||||||||||||||||||||||| | |||||||||||||    
T  28516063 tcatctcccttccattctatcacctcttcctcagataacgggaattccaaatatataatttcaatttgacttgatcccttaaa 28515981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 423
Target Start/End: Original strand, 28096954 - 28097075
Alignment:
Q  302 ttttcttctaagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattt 401  Q
    ||||||||||| || |||| |||||||| ||||||| ||||||| |||||  |||||||||||||||| |||||| | |  |||||||| |||||||| |    
T  28096954 ttttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgt 28097053  T
Q  402 tctctatcaaggcatgtaatgt 423  Q
      ||||||||| ||||||||||    
T  28097054 cttctatcaagtcatgtaatgt 28097075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 28187310 - 28187226
Alignment:
Q  18 ttcatctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaa 102  Q
    |||||||||||||||||| ||  || ||| |||| |||||| | |||||||||||||||||||||||| | ||||||||||||||    
T  28187310 ttcatctcccttccaatctactaccactttctcagatgacgagcattccaaatatataatttcaatttcacttgatcccttaaaa 28187226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 423
Target Start/End: Complemental strand, 28141215 - 28141094
Alignment:
Q  302 ttttcttctaagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattt 401  Q
    ||||||||||| || || | ||| |||||||||||||| || ||||| ||  | ||||| |||||||| |||||| | || |||||||| |||||||| |    
T  28141215 ttttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatct 28141116  T
Q  402 tctctatcaaggcatgtaatgt 423  Q
     |||||||||| ||||||||||    
T  28141115 cctctatcaagtcatgtaatgt 28141094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 423
Target Start/End: Complemental strand, 28150848 - 28150731
Alignment:
Q  306 cttctaagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattttctc 405  Q
    ||||||| || |||| |||||||| || ||||||||||||  | ||| | ||||| |||||||| |||||| | || |||||||| |||||||| |  ||    
T  28150848 cttctaaaacttgaaatatatcttcatagaaccacaacctgttgcgcttcccaggctcttttggtgattcttgtcgtacaatttctttacccatgtcttc 28150749  T
Q  406 tatcaaggcatgtaatgt 423  Q
    ||||||| ||||||||||    
T  28150748 tatcaagtcatgtaatgt 28150731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 26850367 - 26850280
Alignment:
Q  336 accacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattttctctatcaaggcatgtaatgt 423  Q
    ||||||||||||| ||||||||||| |||||    |||||| | ||||| ||||| |||||||| | |||||||||| ||||||||||    
T  26850367 accacaacctactgcgccttccaggctctttaattgattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaatgt 26850280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 28235876 - 28235815
Alignment:
Q  296 accttgttttcttctaagacgtgaattatatctttatggaaccacaacctactacgccttcc 357  Q
    ||||| ||| |||||||||| | |||||||||||||  |||||||||||||||||| |||||    
T  28235876 accttatttgcttctaagacatcaattatatctttacagaaccacaacctactacgtcttcc 28235815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 423
Target Start/End: Complemental strand, 29469883 - 29469762
Alignment:
Q  302 ttttcttctaagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattt 401  Q
    ||||||||||| || |||||||||||||||  | |||| |||||||| ||  ||||||| ||||  || |||||| | |  |||||||| || ||||| |    
T  29469883 ttttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaggatcttcaggtgattcttgtctaacaatttctttccccatat 29469784  T
Q  402 tctctatcaaggcatgtaatgt 423  Q
     |||||||||  ||||||||||    
T  29469783 cctctatcaaatcatgtaatgt 29469762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 419
Target Start/End: Original strand, 29842526 - 29842611
Alignment:
Q  334 gaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattttctctatcaaggcatgta 419  Q
    |||||||||||||||| || ||||||| ||||| |  |||||| | || |||||||| |||||||| |  ||||||||| ||||||    
T  29842526 gaaccacaacctactatgctttccaggctctttcgttgattctggtcgtacaatttctttacccatgtcttctatcaagtcatgta 29842611  T

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Target: scaffold0019 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 259 - 420
Target Start/End: Original strand, 56753 - 56914
Alignment:
Q  259 ataacaaatgaaccattcatgaatatcagtattatctaccttgttttcttctaagacgtgaattatatctttatggaaccacaacctactacgccttcca 358  Q
    ||||||||| ||||||||||| |||| ||||||||  ||||| |||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||    
T  56753 ataacaaataaaccattcatggatattagtattattcaccttattttcttctaagacataaattatatctttatggaaccataacctactacgtcttcca 56852  T
Q  359 ggttcttttggggattctcgacggacaatttccttacccattttctctatcaaggcatgtaa 420  Q
    || |||||||| || |||   ||||||||||| |||||||||||||||||||||||||||||    
T  56853 ggctcttttggagactctttgcggacaatttctttacccattttctctatcaaggcatgtaa 56914  T

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Target: scaffold0019; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 56572 - 56676
Alignment:
Q  18 ttcatctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaacggatgaaaaacaca 117  Q
    |||||||||||||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||| | ||||||||||||| ||||  |||||||||    
T  56572 ttcatctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaatttcacttgatcccttaaagcgga-aaaaaacaca 56670  T
Q  118 aatcaa 123  Q
     |||||    
T  56671 tatcaa 56676  T

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Target: scaffold0038 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 412
Target Start/End: Complemental strand, 44719 - 44527
Alignment:
Q  217 attaataggattagtaaaaaataaggaaagttaaggttaaacataacaaatgaa-ccattcatgaatatcagtattatctaccttgttttcttctaagac 315  Q
    |||||||||||| |||||||| ||  ||||  ||||||||| ||||||||  || ||||||||| |||||||||||    ||||  ||||||||||||||    
T  44719 attaataggattggtaaaaaagaacaaaagg-aaggttaaagataacaaaaaaaaccattcatggatatcagtattc---acctgattttcttctaagac 44624  T
Q  316 gtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattttctctatcaag 412  Q
     | ||||||||||||||||||||||||||| ||| | |||||||| || ||||| |||| |  |  ||||||||| |||||||||||||||||||||    
T  44623 atcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttctttacccattttctctatcaag 44527  T

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Target: scaffold0038; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 36580 - 36492
Alignment:
Q  18 ttcatctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaacgga 106  Q
    |||||||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  36580 ttcatctcccttccaatctatcacctcttcctcagatgacgggaattccaaatatataatttcaatttcacttgatcccttaaagcgga 36492  T

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Target: scaffold0038; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 44952 - 44869
Alignment:
Q  18 ttcatctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaa 101  Q
    ||||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  44952 ttcatctccctcccaatctaccacctcttcctcagatgacgggaattccaaatatataatttcaatttcacttgatcccttaaa 44869  T

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Target: scaffold0038; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 36038 - 35977
Alignment:
Q  296 accttgttttcttctaagacgtgaattatatctttatggaaccacaacctactacgccttcc 357  Q
    ||||| ||| |||||||||| | |||||||||||||  |||||||||||||||||| |||||    
T  36038 accttatttgcttctaagacatcaattatatctttacagaaccacaacctactacgtcttcc 35977  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 422
Target Start/End: Complemental strand, 26137559 - 26137439
Alignment:
Q  302 ttttcttctaagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattt 401  Q
    ||||||| ||| || |||| |||||||| ||| |||||||||||||| ||  ||||||||||||| || |||||| | ||||||||||| |||||||| |    
T  26137559 ttttcttttaaaacatgaactatatcttcatgaaaccacaacctactgcgttttccaggttctttgggtgattcttgtcggacaatttctttacccatat 26137460  T
Q  402 tctctatcaaggcatgtaatg 422  Q
     |||||||||| |||||||||    
T  26137459 cctctatcaagtcatgtaatg 26137439  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 423
Target Start/End: Original strand, 5921980 - 5922101
Alignment:
Q  302 ttttcttctaagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattt 401  Q
    ||||||||||| || |||| |||||||| | || |||| |||||||| ||| ||||||| ||||| || |||||| | |  |||||||| || ||||| |    
T  5921980 ttttcttctaaaacttgaactatatcttcagggcaccataacctactgcgctttccaggctctttcggtgattcttgtctaacaatttcttttcccatgt 5922079  T
Q  402 tctctatcaaggcatgtaatgt 423  Q
     ||||||||   ||||||||||    
T  5922080 cctctatcacatcatgtaatgt 5922101  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 419
Target Start/End: Complemental strand, 35984973 - 35984859
Alignment:
Q  305 tcttctaagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattttct 404  Q
    |||||||| || ||||||||||||| |||  |||| |||| ||||||| |||||||||||| ||| |||||  | || ||||||||||||||||| | ||    
T  35984973 tcttctaaaacttgaattatatcttcatgagaccataaccgactacgctttccaggttcttctggtgattccagtcgaacaatttccttacccatgtcct 35984874  T
Q  405 ctatcaaggcatgta 419  Q
    |||||||||||||||    
T  35984873 ctatcaaggcatgta 35984859  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 412
Target Start/End: Complemental strand, 16692538 - 16692428
Alignment:
Q  302 ttttcttctaagacgtgaattatatctttatggaaccacaacctactacgccttccaggttcttttggggattctcgacggacaatttccttacccattt 401  Q
    ||||||||||| || |||| ||||||||  || |||||||||||||| ||  | ||||| | |||||||||||||   ||||||||||| |||||||| |    
T  16692538 ttttcttctaaaacttgaactatatcttcgtgaaaccacaacctactgcgtttaccaggatgttttggggattcttttcggacaatttctttacccatgt 16692439  T
Q  402 tctctatcaag 412  Q
     ||| ||||||    
T  16692438 cctcaatcaag 16692428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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