View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6781_low_8 (Length: 401)
Name: NF6781_low_8
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 401
Target Start/End: Complemental strand, 3468834 - 3468453
Alignment:
| Q |
20 |
tatagatgtaatggatgaaggggtgcagaatgtggtgatgccaatatccgatgagaacaagtggaagaaaaaggagaatgagattttgcacaatgataag |
119 |
Q |
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| T |
3468834 |
tatagatgtaatggatgaaggggtgcagaatgtggtgatgccaatatccgatgagaacaagtgtaagaaaaaggagaatgagattttgcacaatgataag |
3468735 |
T |
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| Q |
120 |
cgtgcatattgttggctaagtcaagaggatgtgatgcgctacctcctcaactcaatcgggacattttccaatactcctgcacaatccatcgacaaactcg |
219 |
Q |
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| T |
3468734 |
cgtgcatattgttggctaagtcaagaggatgtaatgcgctacctcctcaactcaatcgggacattttccgatactcctgcacaatccatcgacaaactcg |
3468635 |
T |
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| Q |
220 |
acattatagacacacaaaatctatattttctttaccttgatgaccctgcatcctctgctttagagcttctcactgcttccattgtgcaccaatcctctgt |
319 |
Q |
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| T |
3468634 |
acattatagacacacaaaatctatattttctttactttgatgaccctgcatcctctgctttagagcttctcactgcttccattgtgcaccaatcctctgt |
3468535 |
T |
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| Q |
320 |
tgcagtcgttgatccgcaaggcaaactcattggagaaatctcaccctttattttgaattcttgtgatgaaattgttgtccct |
401 |
Q |
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| T |
3468534 |
tgcagtcgttgatccgcaaggcaaactcattggagaaatctcaccctttatgttgaactcttgtgatgaaattgatgtccct |
3468453 |
T |
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