View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6781_low_9 (Length: 398)
Name: NF6781_low_9
Description: NF6781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6781_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 23 - 393
Target Start/End: Original strand, 40838176 - 40838545
Alignment:
| Q |
23 |
gtcaagacaagatttaaactcataaaacaagatagagatatttacatattatccaccaacaaatatctcaaatcgacaacaagggacgaaccagcttcta |
122 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| | | |||||| |||||||| |
|
|
| T |
40838176 |
gtcaagataagatttaaactcataaaacaagatagagatatttatatattatccaccaacaaacatctcaaattgacaacgaagtacgaac-agcttcta |
40838274 |
T |
|
| Q |
123 |
accgattagattcatcttctattgtgaagaatatatctttcttgtgcaaagagaatatatatttgaataaagaaaaagcatgtgtggcccttttattatg |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40838275 |
accgattagattcatctcctattgtgaagaatatatctttcttgtgcaaagagaatatatatttgaataaagaaaaagcatgtgtggcccttttattatg |
40838374 |
T |
|
| Q |
223 |
aagcaagcacatggggggattcttgatcgcaagccaaaggaagctgcctctaattagaaatggatgtggatggaacactttgacataaagctacaataaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40838375 |
aagcaagcacatggggggattcttgatcgcaagccaaaggaagctgcctctaattagaaatggatgtggatggaacactttgacataaagctacaataaa |
40838474 |
T |
|
| Q |
323 |
caccaacacttctctatgattttaaaagttctaaccaattgctgacccaacctgtctttgatcttcaacac |
393 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40838475 |
caccaacacttatctatgattttaaaagttctaaccaattgctgacccaacctgtctttgatcttcaacac |
40838545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University